Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 2.8e-269 931.4 491 100.0
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 1.1e-204 716.8 532 74.6
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 2.5e-204 715.7 525 73.9
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 1.1e-199 700.3 519 73.2
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 2.4e-199 699.1 515 72.6
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 1.5e-198 696.4 515 73.4
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 2.6e-198 695.7 513 73.9
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 1.7e-197 693.0 492 74.2
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 1.7e-197 693.0 521 72.2
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 1.7e-197 693.0 515 73.6
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 4.9e-197 691.4 451 81.4
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 6.5e-197 691.0 515 72.0
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 6.5e-197 691.0 506 73.3
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 8.4e-197 690.6 506 73.3
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 1.1e-196 690.3 457 79.4
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 2.7e-195 685.6 470 77.4
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 7.9e-195 684.1 470 77.7
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 7.9e-195 684.1 470 77.2
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 8.7e-194 680.6 498 71.9
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 8.7e-194 680.6 469 77.8
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 4.3e-193 678.3 504 73.2
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 7.4e-193 677.6 498 72.7
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 7.4e-193 677.6 513 73.5
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.3e-192 676.8 513 73.5
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 1.6e-192 676.4 513 73.3
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.2e-192 676.0 513 73.3
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 2.8e-192 675.6 484 74.2
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 6.3e-192 674.5 569 66.4
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 6.3e-192 674.5 511 72.8
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.8e-191 672.9 514 73.2
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 2.4e-191 672.5 511 70.8
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 5.3e-191 671.4 507 72.0
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 6.9e-191 671.0 495 72.9
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 2.0e-190 669.5 473 75.1
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 2.0e-190 669.5 461 77.7
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 2.6e-190 669.1 497 73.4
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 7.7e-190 667.5 459 77.3
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 1.0e-189 667.2 472 74.4
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 1.3e-189 666.8 436 80.3
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 1.7e-189 666.4 500 71.6
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 2.9e-189 665.6 488 73.6
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 3.8e-189 665.2 472 76.9
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 1.1e-188 663.7 450 77.8
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 2.5e-188 662.5 432 81.0
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 2.5e-188 662.5 478 74.9
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 3.2e-188 662.1 457 76.1
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 9.4e-188 660.6 520 71.5
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 7.9e-187 657.5 511 69.9
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 1.0e-186 657.1 510 70.6
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 1.8e-186 656.4 459 75.2
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 1.8e-186 656.4 507 70.8
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 2.3e-186 656.0 454 76.9
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 5.1e-186 654.8 456 75.4
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 8.8e-186 654.1 459 74.5
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 8.8e-186 654.1 459 74.5
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 1.5e-185 653.3 458 75.1
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 1.5e-185 653.3 458 75.3
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 2.0e-185 652.9 520 68.7
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 5.7e-185 651.4 476 72.3
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 1.3e-184 650.2 458 74.2
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 1.3e-184 650.2 468 76.3
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 8.2e-184 647.5 458 74.0
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 8.2e-184 647.5 504 70.4
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 8.2e-184 647.5 461 74.6
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 1.4e-183 646.7 459 74.5
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 1.4e-183 646.7 456 75.0
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 6.9e-183 644.4 455 75.8
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 1.5e-182 643.3 422 79.6
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 3.4e-182 642.1 511 69.9
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 4.5e-182 641.7 503 71.4
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 7.7e-182 641.0 457 75.7
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 7.7e-182 641.0 550 64.7
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 7.7e-182 641.0 464 72.2
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 1.0e-181 640.6 443 76.7
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 2.2e-181 639.4 512 68.4
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 2.9e-181 639.0 508 70.3
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 6.5e-181 637.9 461 73.8
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 6.5e-181 637.9 458 75.5
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 8.5e-181 637.5 445 75.7
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.4e-180 636.7 470 71.5
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 2.5e-180 636.0 475 70.9
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 3.2e-180 635.6 495 68.1
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 5.5e-180 634.8 513 68.4
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 2.1e-179 632.9 456 74.1
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 3.6e-179 632.1 490 70.4
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 6.1e-179 631.3 457 73.3
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 2.0e-177 626.3 463 71.3
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 9.7e-177 624.0 444 73.6
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 9.7e-177 624.0 444 73.6
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 2.2e-176 622.9 404 81.4
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 4.8e-176 621.7 444 73.6
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 6.3e-176 621.3 450 74.7
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 4.1e-175 618.6 520 65.2
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 1.0e-173 614.0 450 73.8
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 3.8e-173 612.1 406 77.3
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 6.5e-173 611.3 405 78.3
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 8.5e-173 610.9 485 67.4
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 1.4e-172 610.1 434 74.7
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 2.1e-171 606.3 428 74.3
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 2.6e-169 599.4 457 70.5
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 5.7e-169 598.2 446 70.6
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 2.4e-167 592.8 481 68.0
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 4.1e-167 592.0 430 71.6
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 1.2e-166 590.5 433 73.0
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 1.7e-165 586.6 433 72.3
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 5.0e-165 585.1 446 69.5
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 1.1e-164 583.9 490 66.5
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 3.4e-161 572.4 489 65.6
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 8.3e-160 567.8 520 61.7
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 1.4e-159 567.0 489 67.3
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 7.0e-159 564.7 416 70.4
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 1.7e-157 560.1 422 73.5
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 2.9e-157 559.3 457 66.5
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 7.5e-145 518.1 359 76.0
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 1.1e-140 504.2 420 64.3
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 1.1e-140 504.2 420 64.3
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 4.1e-135 485.7 423 59.6
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 3.5e-134 482.6 366 69.9
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 8.9e-130 468.0 453 56.5
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 1.2e-126 457.6 431 56.6
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.0e-125 454.5 376 69.7
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 2.6e-113 413.3 367 59.9
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 1.1e-95 354.8 260 73.1
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 2.3e-93 347.1 422 47.2
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 5.6e-92 342.4 230 80.4
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.4e-90 337.8 361 56.5
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 3.9e-85 319.7 410 46.6
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 1.8e-69 267.7 446 36.5
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 4.8e-67 259.6 216 63.4
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 5.9e-65 252.7 385 36.6
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 3.1e-58 230.3 237 61.2
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 9.1e-58 228.8 433 32.1
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 4.7e-54 216.5 393 34.9
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 3.0e-53 213.8 156 76.3
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 5.2e-53 213.0 247 52.6
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.2e-49 201.8 452 34.1
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.0e-40 172.2 126 65.9
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 3.8e-40 170.2 141 65.2
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 4.2e-39 166.8 162 56.2
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 1.4e-29 135.2 118 60.2
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.8e-29 134.8 120 62.5
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 3.2e-26 124.0 84 69.0
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 3.9e-24 117.1 114 57.9
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 1.2e-14 85.5 393 24.2
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 5.8e-12 76.6 67 67.2
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 2.4e-10 71.2 97 50.5
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 4.7e-06 57.0 220 25.5


User provided reference genes

Program Settings