Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A308G12 Lonicera japonica HOM05D006511 ORTHO05D007567 3.5e-101 371.7 200 100.0
Dinv22148 Davidia involucrata HOM05D006511 ORTHO05D007567 2.6e-43 179.5 263 46.8
CSS0025861 Camellia sinensis var. sinensis HOM05D006511 ORTHO05D007567 8.3e-42 174.5 248 47.6
TAR636G2957 Trochodendron aralioides HOM05D006511 ORTHO05D007567 3.5e-40 169.1 240 49.2
Actinidia29367 Actinidia chinensis HOM05D006511 ORTHO05D007567 6.6e-39 164.9 266 45.1
HanXRQChr04g0102481 Helianthus annuus HOM05D006511 ORTHO05D007567 3.4e-35 152.5 245 41.2
Potri.013G095400 Populus trichocarpa HOM05D006511 ORTHO05D007567 3.4e-35 152.5 262 41.2
Hma1.2p1_1405F.1_g281380 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 9.8e-35 151.0 150 61.3
CiPaw.03G012800 Carya illinoinensis HOM05D006511 ORTHO05D007567 1.7e-34 150.2 261 42.5
Aqoxy6G00041 Aquilegia oxysepala HOM05D006511 ORTHO05D007567 2.9e-34 149.4 181 50.3
HanXRQChr04g0102471 Helianthus annuus HOM05D006511 ORTHO05D007567 2.9e-34 149.4 245 40.8
Hund17299 Selenicereus undatus HOM05D006511 ORTHO05D007567 4.9e-34 148.7 256 41.4
QL09p001374 Quercus lobata HOM05D006511 ORTHO05D007567 6.4e-34 148.3 264 40.9
RcHm_v2.0_Chr6g0249621 Rosa chinensis HOM05D006511 ORTHO05D007567 6.4e-34 148.3 264 40.5
Sabra13G0081400 Salix brachista HOM05D006511 ORTHO05D007567 8.3e-34 147.9 263 40.3
MD05G1006300 Malus domestica HOM05D006511 ORTHO05D007567 2.4e-33 146.4 262 42.0
FvH4_2g00330 Fragaria vesca HOM05D006511 ORTHO05D007567 5.4e-33 145.2 264 40.5
AUR62038542 Chenopodium quinoa HOM05D006511 ORTHO05D007567 9.2e-33 144.4 260 40.8
FAN19G0686 Fragaria x ananassa HOM05D006511 ORTHO05D007567 9.2e-33 144.4 264 40.9
ECA247G1184 Erigeron canadensis HOM05D006511 ORTHO05D007567 1.2e-32 144.1 261 39.1
Lsat_1_v5_gn_1_24541 Lactuca sativa HOM05D006511 ORTHO05D007567 1.6e-32 143.7 262 38.5
Migut.C01397 Erythranthe guttata HOM05D006511 ORTHO05D007567 3.5e-32 142.5 246 40.2
FAN24G0692 Fragaria x ananassa HOM05D006511 ORTHO05D007567 4.6e-32 142.1 264 40.2
Manes.18G109250 Manihot esculenta HOM05D006511 ORTHO05D007567 4.6e-32 142.1 264 39.0
FAN20G0885 Fragaria x ananassa HOM05D006511 ORTHO05D007567 7.8e-32 141.4 272 40.1
THA.LOC104815798 Tarenaya hassleriana HOM05D006511 ORTHO05D007567 1.7e-31 140.2 234 41.5
Sc01g0000050 Simmondsia chinensis HOM05D006511 ORTHO05D007567 6.6e-31 138.3 256 40.6
CANSAT56G0749 Cannabis sativa HOM05D006511 ORTHO05D007567 8.6e-31 137.9 263 39.2
BcaB03g13696 Brassica carinata HOM05D006511 ORTHO05D007567 1.9e-30 136.7 234 43.2
Carub.0001s3169 Capsella rubella HOM05D006511 ORTHO05D007567 9.5e-30 134.4 234 41.0
AT1G33500 Arabidopsis thaliana HOM05D006511 ORTHO05D007567 1.2e-29 134.0 234 40.6
DCAR_014062 Daucus carota HOM05D006511 ORTHO05D007567 1.2e-29 134.0 265 38.9
Nn5g27238 Nelumbo nucifera HOM05D006511 ORTHO05D007567 1.6e-29 133.7 268 36.2
Sp1g28980 Schrenkiella parvula HOM05D006511 ORTHO05D007567 1.6e-29 133.7 234 41.5
BcaC05g27802 Brassica carinata HOM05D006511 ORTHO05D007567 2.1e-29 133.3 234 41.9
Gohir.A08G228900 Gossypium hirsutum HOM05D006511 ORTHO05D007567 4.7e-29 132.1 229 40.2
PSO384G4286 Papaver somniferum HOM05D006511 ORTHO05D007567 4.7e-29 132.1 258 38.0
CARHR032940 Cardamine hirsuta HOM05D006511 ORTHO05D007567 8.0e-29 131.3 237 42.6
Rhsim02G0172300 Rhododendron simsii HOM05D006511 ORTHO05D007567 1.8e-28 130.2 121 61.2
Aa31LG6G7970 Aethionema arabicum HOM05D006511 ORTHO05D007567 2.3e-28 129.8 234 39.7
BraA05t21311Z Brassica rapa HOM05D006511 ORTHO05D007567 8.9e-28 127.9 249 40.2
TWI12G0802 Tripterygium wilfordii HOM05D006511 ORTHO05D007567 8.9e-28 127.9 116 61.2
MBI15_g27824_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 1.2e-27 127.5 250 36.8
Thecc.08G168400 Theobroma cacao HOM05D006511 ORTHO05D007567 2.0e-27 126.7 264 35.2
MBI15_g27821_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 2.6e-27 126.3 250 36.0
Phvul.011G215700 Phaseolus vulgaris HOM05D006511 ORTHO05D007567 5.8e-27 125.2 263 37.3
SGA_v2.0_scaffold118G32636 Striga asiatica HOM05D006511 ORTHO05D007567 2.2e-26 123.2 261 36.4
VMungo1127G0740 Vigna mungo HOM05D006511 ORTHO05D007567 2.2e-26 123.2 279 35.5
Sc01g0000180 Simmondsia chinensis HOM05D006511 ORTHO05D007567 1.1e-25 120.9 111 64.0
Eucgr.F04079 Eucalyptus grandis HOM05D006511 ORTHO05D007567 1.9e-25 120.2 111 62.2
Sed0008597 Sechium edule HOM05D006511 ORTHO05D007567 1.9e-25 120.2 270 34.8
BolC5t32531H Brassica oleracea HOM05D006511 ORTHO05D007567 2.4e-25 119.8 259 37.8
C05p38000 Brassica napus HOM05D006511 ORTHO05D007567 3.2e-25 119.4 259 37.8
CDE10G1127 Ceratophyllum demersum HOM05D006511 ORTHO05D007567 2.7e-24 116.3 198 37.9
Gohir.D08G249200 Gossypium hirsutum HOM05D006511 ORTHO05D007567 2.7e-24 116.3 263 35.4
Gorai.004G265800 Gossypium raimondii HOM05D006511 ORTHO05D007567 3.5e-24 115.9 263 35.4
FvH4_2g04930 Fragaria vesca HOM05D006511 ORTHO05D007567 6.0e-24 115.2 132 53.8
Solyc11g045100.2 Solanum lycopersicum HOM05D006511 ORTHO05D007567 6.0e-24 115.2 247 36.4
Prupe.8G003600 Prunus persica HOM05D006511 ORTHO05D007567 7.8e-24 114.8 252 38.5
Sopen11g020540 Solanum pennellii HOM05D006511 ORTHO05D007567 1.3e-23 114.0 252 33.3
PGSC0003DMG401019059 Solanum tuberosum HOM05D006511 ORTHO05D007567 1.3e-23 114.0 252 32.9
FAN20G1821 Fragaria x ananassa HOM05D006511 ORTHO05D007567 2.3e-23 113.2 124 56.5
TPR.G34175 Trifolium pratense HOM05D006511 ORTHO05D007567 2.3e-23 113.2 268 35.4
FAN24G3334 Fragaria x ananassa HOM05D006511 ORTHO05D007567 3.0e-23 112.8 132 53.0
Cc10_g16070 Coffea canephora HOM05D006511 ORTHO05D007567 3.9e-23 112.5 111 55.9
Psat7g227400 Pisum sativum HOM05D006511 ORTHO05D007567 8.6e-23 111.3 261 34.5
Glyma.12G241400 Glycine max HOM05D006511 ORTHO05D007567 3.6e-21 105.9 120 51.7
SalBow7G4276 Salvia bowleyana HOM05D006511 ORTHO05D007567 3.6e-21 105.9 292 31.2
arahy.Tifrunner.gnm1.ann1.VJ45CS Arachis hypogaea HOM05D006511 ORTHO05D007567 4.7e-21 105.5 111 55.0
arahy.Tifrunner.gnm1.ann1.HN79E8 Arachis hypogaea HOM05D006511 ORTHO05D007567 6.2e-21 105.1 176 43.2
Thhalv10008295m.g Eutrema salsugineum HOM05D006511 ORTHO05D007567 1.4e-20 104.0 218 36.7
Ciclev10023919m.g Citrus clementina HOM05D006511 ORTHO05D007567 5.2e-20 102.1 125 51.2
AUR62013391 Chenopodium quinoa HOM05D006511 ORTHO05D007567 1.5e-19 100.5 99 56.6
Hma1.2p1_1476F.1_g285820 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 1.5e-19 100.5 102 58.8
Ah.13g067720 Amaranthus hybridus HOM05D006511 ORTHO05D007567 2.6e-19 99.8 237 34.2
PGR004G0115 Punica granatum HOM05D006511 ORTHO05D007567 7.5e-19 98.2 136 47.1
COL.COLO4_05044 Corchorus olitorius HOM05D006511 ORTHO05D007567 1.7e-18 97.1 121 49.6
Medtr1g067720 Medicago truncatula HOM05D006511 ORTHO05D007567 1.7e-18 97.1 114 50.0
HPP92_003819 Vanilla planifolia HOM05D006511 ORTHO05D007567 1.7e-18 97.1 228 34.2
Cfa008039 Carpinus fangiana HOM05D006511 ORTHO05D007567 4.9e-18 95.5 262 34.0
vmacro11027 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 7.1e-17 91.7 104 50.0
Ca_13616_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 1.0e-15 87.8 263 30.4
Ca_30187_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 1.0e-15 87.8 263 30.4
EL10Ac1g01283 Beta vulgaris HOM05D006511 ORTHO05D007567 1.3e-15 87.4 245 33.1
Lj3g0014137 Lotus japonicus HOM05D006511 ORTHO05D007567 3.0e-15 86.3 257 31.9
ClCG11G008290 Citrullus lanatus HOM05D006511 ORTHO05D007567 5.1e-15 85.5 337 27.9
AL1G47890 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 1.2e-13 80.9 173 38.2
unitig_749.g13868 Utricularia gibba HOM05D006511 ORTHO05D007567 3.6e-13 79.3 207 32.9
MELO3C008102.2 Cucumis melo HOM05D006511 ORTHO05D007567 4.7e-13 79.0 269 27.9
Os08g0320300 Oryza sativa ssp. japonica HOM05D006511 ORTHO05D007567 6.2e-13 78.6 127 40.9
Lalb_Chr19g0131891 Lupinus albus HOM05D006511 ORTHO05D007567 1.8e-12 77.0 68 61.8
MSTRG.1607 Avicennia marina HOM05D006511 ORTHO05D007567 1.2e-11 74.3 159 34.0
Haze_13990 Corylus avellana HOM05D006511 ORTHO05D007567 2.2e-10 70.1 166 34.3
Hma1.2p1_1476F.1_g285810 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 2.9e-10 69.7 50 70.0
Eucgr.F04078 Eucalyptus grandis HOM05D006511 ORTHO05D007567 6.4e-10 68.6 94 44.7
ATR1204G001 Amborella trichopoda HOM05D006511 ORTHO05D007567 1.9e-09 67.0 166 33.1
Zm00001eb028220 Zea mays HOM05D006511 ORTHO05D007567 3.2e-09 66.2 231 26.8
Ciclev10023084m.g Citrus clementina HOM05D006511 ORTHO05D007567 1.2e-08 64.3 50 68.0
Haze_13992 Corylus avellana HOM05D006511 ORTHO05D007567 1.6e-08 63.9 64 57.8
COL.COLO4_36458 Corchorus olitorius HOM05D006511 ORTHO05D007567 4.6e-08 62.4 83 45.8
COL.COLO4_05796 Corchorus olitorius HOM05D006511 ORTHO05D007567 6.0e-08 62.0 94 42.6
Atru.chr13.2578 Acer truncatum HOM05D006511 ORTHO05D007567 7.8e-08 61.6 261 28.7
Peaxi162Scf00078g01026 Petunia axillaris HOM05D006511 ORTHO05D007567 1.0e-07 61.2 143 32.9
AL1G48040 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 1.7e-07 60.5 105 39.0
Lalb_Chr19g0131901 Lupinus albus HOM05D006511 ORTHO05D007567 3.9e-07 59.3 70 45.7
Nitab4.5_0000009g0490 Nicotiana tabacum HOM05D006511 ORTHO05D007567 3.9e-07 59.3 202 27.7
CsaV3_2G033310 Cucumis sativus L. HOM05D006511 ORTHO05D007567 5.1e-07 58.9 158 31.6
Cpa.g.sc142.8 Carica papaya HOM05D006511 ORTHO05D007567 6.6e-07 58.5 111 39.6
Medtr1g067710 Medicago truncatula HOM05D006511 ORTHO05D007567 8.7e-07 58.2 103 36.9
Nn5g27242 Nelumbo nucifera HOM05D006511 ORTHO05D007567 1.5e-06 57.4 75 44.0
Sc01g0000190 Simmondsia chinensis HOM05D006511 ORTHO05D007567 1.5e-06 57.4 48 60.4
arahy.Tifrunner.gnm1.ann1.FKD4F4 Arachis hypogaea HOM05D006511 ORTHO05D007567 1.9e-06 57.0 115 35.7


User provided reference genes

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