Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 3.6e-91 338.2 166 100.0
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 1.3e-35 153.7 162 53.1
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 3.7e-35 152.1 157 53.5
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 4.0e-34 148.7 159 52.2
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 9.0e-34 147.5 153 51.6
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 4.5e-33 145.2 162 52.5
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.7e-32 143.3 161 52.2
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 2.2e-32 142.9 156 52.6
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 3.8e-32 142.1 169 50.3
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 1.1e-31 140.6 162 49.4
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.1e-31 140.6 158 49.4
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 2.5e-31 139.4 156 53.8
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.2e-31 139.0 161 54.7
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 4.2e-31 138.7 174 48.3
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 5.5e-31 138.3 160 50.0
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 7.1e-31 137.9 158 46.8
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 7.1e-31 137.9 154 53.2
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 7.1e-31 137.9 154 53.2
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 1.2e-30 137.1 159 49.7
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.2e-30 137.1 157 51.0
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.6e-30 136.7 157 51.0
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 2.7e-30 136.0 159 52.2
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 7.9e-30 134.4 159 49.1
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 1.0e-29 134.0 154 49.4
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.0e-29 134.0 155 49.7
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.0e-29 134.0 157 49.7
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 1.0e-29 134.0 156 49.4
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 1.8e-29 133.3 158 49.4
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.8e-29 133.3 158 50.0
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 2.3e-29 132.9 164 50.0
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 3.0e-29 132.5 158 48.1
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 3.0e-29 132.5 157 52.2
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.0e-29 132.5 157 49.7
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.9e-29 132.1 157 48.4
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 3.9e-29 132.1 163 50.3
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 6.7e-29 131.3 158 49.4
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 1.1e-28 130.6 159 47.2
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.5e-28 130.2 154 51.9
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 1.9e-28 129.8 155 51.0
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 2.5e-28 129.4 155 52.3
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 2.5e-28 129.4 155 52.3
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 2.5e-28 129.4 155 52.3
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 3.3e-28 129.0 164 47.6
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 3.3e-28 129.0 158 48.1
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 5.7e-28 128.3 160 50.0
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 5.7e-28 128.3 157 47.8
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 7.4e-28 127.9 154 48.7
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 7.4e-28 127.9 154 48.7
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 7.4e-28 127.9 157 48.4
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 9.6e-28 127.5 157 47.8
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 1.3e-27 127.1 159 46.5
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 1.3e-27 127.1 165 47.9
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.3e-27 127.1 162 47.5
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 1.3e-27 127.1 159 47.8
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 1.6e-27 126.7 161 52.2
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 2.8e-27 125.9 154 50.6
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 2.8e-27 125.9 125 60.8
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 3.7e-27 125.6 161 46.0
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 4.8e-27 125.2 157 49.0
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 4.8e-27 125.2 161 48.4
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 8.2e-27 124.4 162 46.9
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 1.1e-26 124.0 149 45.6
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.1e-26 124.0 166 45.8
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 1.1e-26 124.0 157 43.3
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 1.1e-26 124.0 156 48.7
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.4e-26 123.6 161 47.2
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 2.4e-26 122.9 158 46.8
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 3.1e-26 122.5 156 44.2
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 4.0e-26 122.1 158 46.8
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 4.0e-26 122.1 156 48.7
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 5.3e-26 121.7 156 47.4
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 5.3e-26 121.7 157 45.2
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 6.9e-26 121.3 158 48.7
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 9.0e-26 120.9 156 44.9
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 1.2e-25 120.6 156 49.4
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 1.2e-25 120.6 156 49.4
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.2e-25 120.6 154 45.5
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 1.2e-25 120.6 125 56.0
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 1.5e-25 120.2 150 50.0
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 2.6e-25 119.4 161 44.1
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.4e-25 119.0 165 49.1
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 4.5e-25 118.6 155 44.5
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 4.5e-25 118.6 155 44.5
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.8e-25 118.2 141 48.9
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 7.6e-25 117.9 153 45.8
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.0e-24 117.5 156 46.8
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.0e-24 117.5 167 42.5
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 1.3e-24 117.1 151 45.7
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.3e-24 117.1 154 45.5
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 1.3e-24 117.1 154 44.8
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 2.9e-24 115.9 156 46.2
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 2.9e-24 115.9 153 49.0
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 3.8e-24 115.5 163 44.8
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 3.8e-24 115.5 154 44.2
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.0e-24 115.2 150 46.0
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 5.0e-24 115.2 163 44.8
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.1e-23 114.0 151 46.4
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 1.1e-23 114.0 156 46.8
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 1.4e-23 113.6 175 40.0
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 1.9e-23 113.2 167 40.1
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 1.9e-23 113.2 156 47.4
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 2.5e-23 112.8 154 46.1
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 2.5e-23 112.8 161 42.9
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 2.5e-23 112.8 160 46.9
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 3.2e-23 112.5 151 45.7
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 3.2e-23 112.5 156 46.8
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 4.2e-23 112.1 148 45.3
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 5.5e-23 111.7 154 44.2
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 5.5e-23 111.7 154 43.5
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 5.5e-23 111.7 172 42.4
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 5.5e-23 111.7 148 42.6
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 9.3e-23 110.9 153 45.1
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 9.3e-23 110.9 111 59.5
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.6e-22 110.2 161 41.6
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.6e-22 110.2 154 44.8
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 2.1e-22 109.8 154 42.2
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 2.1e-22 109.8 149 41.6
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.7e-22 109.4 164 43.9
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 3.5e-22 109.0 161 43.5
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 4.6e-22 108.6 156 43.6
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 4.6e-22 108.6 156 43.6
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 4.6e-22 108.6 156 43.6
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 7.9e-22 107.8 160 41.2
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.3e-21 107.1 154 44.2
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 1.8e-21 106.7 159 42.8
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 2.3e-21 106.3 160 42.5
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 3.9e-21 105.5 156 44.2
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 3.9e-21 105.5 156 44.2
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.9e-21 105.5 151 49.0
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.9e-21 105.5 151 49.0
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 8.7e-21 104.4 164 45.1
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 7.4e-20 101.3 162 44.4
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 4.8e-19 98.6 130 45.4
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.1e-18 97.4 148 47.3
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 1.4e-18 97.1 116 46.6
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 5.3e-18 95.1 168 38.1
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 5.3e-18 95.1 150 40.0
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.2e-17 94.0 63 73.0
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 1.5e-17 93.6 151 39.7
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 2.0e-17 93.2 156 38.5
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 1.0e-16 90.9 157 36.3
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.7e-16 90.1 53 81.1
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.0e-16 88.6 152 40.8
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 8.5e-16 87.8 158 39.2
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 1.2e-14 84.0 159 37.1
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 1.6e-14 83.6 57 73.7
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 2.1e-14 83.2 89 53.9
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 7.9e-14 81.3 154 35.1
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 3.9e-13 79.0 165 35.8
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 2.0e-12 76.6 92 47.8
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 2.0e-12 76.6 66 65.2
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 5.7e-12 75.1 40 82.5
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.2e-11 73.2 46 71.7
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 3.7e-11 72.4 85 44.7
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 8.2e-11 71.2 67 53.7
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 8.2e-11 71.2 125 40.0
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 1.4e-10 70.5 51 56.9
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 1.7e-08 63.5 80 45.0
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 4.2e-07 58.9 121 35.5
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 5.5e-07 58.5 182 27.5
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 2.1e-06 56.6 96 43.8
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 2.1e-06 56.6 96 43.8
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 3.6e-06 55.8 96 43.8
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 3.6e-06 55.8 96 43.8


User provided reference genes

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