Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 4.5e-118 427.9 218 100.0
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 5.7e-36 155.2 252 42.1
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.6e-35 153.7 219 42.5
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 2.2e-35 153.3 224 44.6
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 1.1e-34 151.0 221 43.0
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 1.4e-34 150.6 227 44.5
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 6.9e-34 148.3 221 41.6
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 6.9e-34 148.3 227 40.5
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 9.1e-34 147.9 219 41.1
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 2.6e-33 146.4 226 46.5
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 4.5e-33 145.6 268 38.4
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 2.2e-32 143.3 226 42.9
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 1.1e-31 141.0 226 43.4
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 2.5e-31 139.8 221 43.4
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 4.2e-31 139.0 233 43.8
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 3.6e-30 136.0 221 41.2
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 7.9e-30 134.8 221 39.4
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 2.3e-29 133.3 222 39.2
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.0e-29 132.9 218 36.7
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 3.9e-29 132.5 222 39.2
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 3.9e-29 132.5 217 39.6
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 2.6e-28 129.8 219 39.3
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 5.7e-28 128.6 224 42.9
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 7.4e-28 128.3 220 38.6
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 9.7e-28 127.9 222 38.3
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 9.7e-28 127.9 222 37.4
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.3e-27 127.5 223 37.7
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.3e-27 127.5 223 37.7
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.3e-27 127.5 220 39.1
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 2.8e-27 126.3 219 37.9
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 2.8e-27 126.3 220 37.7
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 2.8e-27 126.3 217 37.3
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 6.3e-27 125.2 225 36.0
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 8.2e-27 124.8 224 39.3
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.8e-26 123.6 220 40.0
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.8e-26 123.6 221 36.7
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 1.8e-26 123.6 225 36.0
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 5.3e-26 122.1 220 37.7
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.2e-25 120.9 217 35.0
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 1.2e-25 120.9 222 36.0
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 1.2e-25 120.9 217 36.4
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 1.2e-25 120.9 223 39.0
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 1.2e-25 120.9 249 41.0
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 1.5e-25 120.6 233 36.5
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 1.5e-25 120.6 180 40.0
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 1.5e-25 120.6 216 35.6
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.5e-25 120.6 225 35.1
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.0e-25 120.2 220 35.5
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 2.0e-25 120.2 219 38.8
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 3.4e-25 119.4 221 34.8
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 7.7e-25 118.2 230 40.0
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.0e-24 117.9 217 34.6
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 1.0e-24 117.9 219 36.1
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.3e-24 117.5 219 41.6
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 2.9e-24 116.3 220 34.5
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 3.8e-24 115.9 225 32.4
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 6.5e-24 115.2 224 36.6
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 6.5e-24 115.2 226 34.5
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 8.5e-24 114.8 220 34.1
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 8.5e-24 114.8 220 34.1
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 8.5e-24 114.8 222 36.5
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 8.5e-24 114.8 223 35.9
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 8.5e-24 114.8 217 34.1
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 1.1e-23 114.4 219 37.9
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 1.1e-23 114.4 219 37.9
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.1e-23 114.4 219 37.9
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 1.1e-23 114.4 222 36.0
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.1e-23 114.4 219 37.0
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 1.9e-23 113.6 220 34.1
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 2.5e-23 113.2 228 39.9
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 2.5e-23 113.2 220 33.6
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 2.5e-23 113.2 220 33.6
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 2.5e-23 113.2 228 38.2
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 2.5e-23 113.2 219 32.9
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 3.2e-23 112.8 78 65.4
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 3.2e-23 112.8 218 34.9
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 5.5e-23 112.1 221 35.7
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 7.2e-23 111.7 219 34.7
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 9.4e-23 111.3 226 33.6
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 9.4e-23 111.3 219 36.5
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.2e-22 110.9 219 39.3
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 1.6e-22 110.5 219 33.3
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 1.6e-22 110.5 222 33.8
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.6e-22 110.5 221 35.3
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.1e-22 110.2 219 32.9
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 2.7e-22 109.8 216 32.9
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 3.6e-22 109.4 224 40.2
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 6.1e-22 108.6 215 36.7
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 6.1e-22 108.6 221 35.7
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 1.0e-21 107.8 225 32.9
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.0e-21 107.8 219 32.0
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.0e-21 107.8 219 32.0
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.4e-21 107.5 219 37.4
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 1.4e-21 107.5 220 33.6
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 3.0e-21 106.3 219 38.4
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 5.2e-21 105.5 221 33.5
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 8.8e-21 104.8 77 63.6
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 1.1e-20 104.4 223 36.8
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 1.5e-20 104.0 229 33.6
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.5e-20 104.0 231 35.9
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 2.0e-20 103.6 223 32.7
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 4.4e-20 102.4 200 37.5
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 5.7e-20 102.1 219 31.1
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.3e-19 100.9 225 33.8
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 2.8e-19 99.8 79 57.0
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 4.8e-19 99.0 218 32.6
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 8.2e-19 98.2 217 31.8
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 1.4e-18 97.4 254 30.3
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.8e-18 97.1 225 32.4
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 5.3e-18 95.5 224 31.2
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 1.2e-17 94.4 219 37.4
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 1.6e-17 94.0 79 59.5
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 1.6e-17 94.0 255 29.8
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 1.3e-16 90.9 77 57.1
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 1.7e-16 90.5 172 32.0
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 5.0e-16 89.0 212 29.7
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 6.5e-16 88.6 169 33.7
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 1.1e-15 87.8 223 29.6
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 2.5e-15 86.7 224 30.4
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 2.5e-15 86.7 227 30.0
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 5.5e-15 85.5 215 29.3
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 9.4e-15 84.7 76 44.7
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.2e-14 84.3 76 52.6
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 6.1e-14 82.0 220 30.5
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 8.0e-14 81.6 79 53.2
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 1.0e-13 81.3 78 43.6
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 1.8e-13 80.5 215 27.9
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 2.2e-11 73.6 76 47.4
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 3.7e-11 72.8 218 28.9
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 3.7e-11 72.8 219 29.2
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 2.4e-10 70.1 218 28.9
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 2.4e-10 70.1 218 28.9
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 4.1e-10 69.3 208 28.4
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 5.3e-10 68.9 220 27.7
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 7.0e-10 68.6 164 28.7
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 7.0e-10 68.6 218 28.9
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 9.1e-10 68.2 218 28.0
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 1.2e-09 67.8 218 28.0
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 1.6e-09 67.4 220 27.7
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 1.0e-08 64.7 90 42.2
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 1.7e-08 63.9 209 28.7
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 2.2e-08 63.5 217 27.2
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 2.9e-08 63.2 41 73.2
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 3.8e-08 62.8 214 26.2
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 3.8e-08 62.8 220 33.2
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 5.0e-08 62.4 211 28.4
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 5.0e-08 62.4 214 28.0
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 1.1e-07 61.2 214 27.6
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 1.1e-07 61.2 214 27.6
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 1.9e-07 60.5 176 28.4
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 2.5e-07 60.1 82 42.7
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 4.2e-07 59.3 79 36.7


User provided reference genes

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