Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A287G22 Lonicera japonica HOM05D006116 ORTHO05D007795 4.1e-226 787.7 396 100.0
Actinidia03408 Actinidia chinensis HOM05D006116 ORTHO05D007795 2.2e-163 579.3 402 71.6
vmacro00376 Vaccinium macrocarpon HOM05D006116 ORTHO05D007795 4.9e-163 578.2 405 70.9
Rhsim11G0056500 Rhododendron simsii HOM05D006116 ORTHO05D007795 1.4e-162 576.6 405 70.4
CSS0043999 Camellia sinensis var. sinensis HOM05D006116 ORTHO05D007795 5.1e-160 568.2 404 69.1
Cc08_g01540 Coffea canephora HOM05D006116 ORTHO05D007795 1.5e-156 556.6 403 72.5
PGSC0003DMG400001856 Solanum tuberosum HOM05D006116 ORTHO05D007795 1.5e-156 556.6 393 68.7
Nitab4.5_0006135g0020 Nicotiana tabacum HOM05D006116 ORTHO05D007795 2.0e-156 556.2 396 68.4
CSS0034154 Camellia sinensis var. sinensis HOM05D006116 ORTHO05D007795 7.6e-156 554.3 382 70.7
Oeu020145.1 Olea europaea HOM05D006116 ORTHO05D007795 2.2e-155 552.7 370 71.4
PGR042G3339 Punica granatum HOM05D006116 ORTHO05D007795 6.4e-155 551.2 411 65.9
HanXRQChr03g0087311 Helianthus annuus HOM05D006116 ORTHO05D007795 8.4e-155 550.8 373 70.2
Sopen08g026090 Solanum pennellii HOM05D006116 ORTHO05D007795 1.4e-154 550.1 389 68.1
Solyc08g077510.4 Solanum lycopersicum HOM05D006116 ORTHO05D007795 1.2e-153 547.0 389 67.9
Nitab4.5_0001255g0040 Nicotiana tabacum HOM05D006116 ORTHO05D007795 1.6e-153 546.6 401 67.1
CAN.G1445.8 Capsicum annuum HOM05D006116 ORTHO05D007795 2.7e-153 545.8 394 67.5
COL.COLO4_06703 Corchorus olitorius HOM05D006116 ORTHO05D007795 1.0e-152 543.9 404 66.3
ECA240G2524 Erigeron canadensis HOM05D006116 ORTHO05D007795 8.7e-152 540.8 387 69.0
Peaxi162Scf00084g00117 Petunia axillaris HOM05D006116 ORTHO05D007795 1.1e-151 540.4 393 67.2
Ciclev10020221m.g Citrus clementina HOM05D006116 ORTHO05D007795 9.6e-151 537.3 397 66.5
GSVIVG01013271001 Vitis vinifera HOM05D006116 ORTHO05D007795 3.7e-150 535.4 417 67.6
Gohir.A12G211900 Gossypium hirsutum HOM05D006116 ORTHO05D007795 6.2e-150 534.6 351 74.1
FAN08G3374 Fragaria x ananassa HOM05D006116 ORTHO05D007795 1.1e-149 533.9 401 65.3
Prupe.5G050800 Prunus persica HOM05D006116 ORTHO05D007795 1.4e-149 533.5 356 71.6
Gorai.008G230000 Gossypium raimondii HOM05D006116 ORTHO05D007795 2.4e-149 532.7 351 74.1
MD04G1057000 Malus domestica HOM05D006116 ORTHO05D007795 2.4e-149 532.7 356 72.8
FAN18G3779 Fragaria x ananassa HOM05D006116 ORTHO05D007795 4.0e-149 531.9 401 64.3
FAN04G0705 Fragaria x ananassa HOM05D006116 ORTHO05D007795 5.3e-149 531.6 401 64.8
Lsat_1_v5_gn_6_88480 Lactuca sativa HOM05D006116 ORTHO05D007795 9.0e-149 530.8 332 74.7
FvH4_5g20810 Fragaria vesca HOM05D006116 ORTHO05D007795 1.5e-148 530.0 401 64.1
THA.LOC104813328 Tarenaya hassleriana HOM05D006116 ORTHO05D007795 2.6e-148 529.3 400 66.0
Hma1.2p1_0414F.1_g147510 Hydrangea macrophylla HOM05D006116 ORTHO05D007795 3.8e-147 525.4 400 66.8
SGA_v2.0_scaffold20G09247 Striga asiatica HOM05D006116 ORTHO05D007795 5.5e-146 521.5 307 78.8
DCAR_008310 Daucus carota HOM05D006116 ORTHO05D007795 7.1e-146 521.2 307 79.8
Glyma.17G150200 Glycine max HOM05D006116 ORTHO05D007795 2.1e-145 519.6 327 74.9
arahy.Tifrunner.gnm1.ann1.F87Z6X Arachis hypogaea HOM05D006116 ORTHO05D007795 6.0e-145 518.1 327 74.9
Lj4g0012718 Lotus japonicus HOM05D006116 ORTHO05D007795 6.0e-145 518.1 327 74.6
arahy.Tifrunner.gnm1.ann1.L13TYF Arachis hypogaea HOM05D006116 ORTHO05D007795 7.9e-145 517.7 327 74.9
ClCG10G002040 Citrullus lanatus HOM05D006116 ORTHO05D007795 1.0e-144 517.3 396 68.2
CANSAT21G1244 Cannabis sativa HOM05D006116 ORTHO05D007795 1.3e-144 516.9 426 62.0
Ca_22031_v3 Cicer arietinum L. HOM05D006116 ORTHO05D007795 8.7e-144 514.2 327 74.3
CsaV3_3G002130 Cucumis sativus L. HOM05D006116 ORTHO05D007795 1.5e-143 513.5 314 76.4
BolC7t45369H Brassica oleracea HOM05D006116 ORTHO05D007795 5.7e-143 511.5 394 65.5
Duzib205G0680 Durio zibethinus HOM05D006116 ORTHO05D007795 9.7e-143 510.8 400 66.5
QL12p007972 Quercus lobata HOM05D006116 ORTHO05D007795 2.8e-142 509.2 306 77.8
C07p48610 Brassica napus HOM05D006116 ORTHO05D007795 3.7e-142 508.8 394 65.2
TPR.G11192 Trifolium pratense HOM05D006116 ORTHO05D007795 4.8e-142 508.4 326 73.9
CiPaw.11G085600 Carya illinoinensis HOM05D006116 ORTHO05D007795 8.2e-142 507.7 428 61.0
VMungo0251G0386 Vigna mungo HOM05D006116 ORTHO05D007795 4.1e-141 505.4 346 70.5
MELO3C013885.2 Cucumis melo HOM05D006116 ORTHO05D007795 9.0e-141 504.2 394 64.5
Potri.003G085600 Populus trichocarpa HOM05D006116 ORTHO05D007795 1.5e-140 503.4 397 64.7
Phvul.003G227000 Phaseolus vulgaris HOM05D006116 ORTHO05D007795 2.6e-140 502.7 327 70.9
Aa31LG2G13210 Aethionema arabicum HOM05D006116 ORTHO05D007795 3.4e-140 502.3 390 64.9
Migut.E00901 Erythranthe guttata HOM05D006116 ORTHO05D007795 3.4e-140 502.3 310 75.2
Lalb_Chr05g0220761 Lupinus albus HOM05D006116 ORTHO05D007795 3.4e-140 502.3 382 63.6
Medtr4g099100 Medicago truncatula HOM05D006116 ORTHO05D007795 5.9e-140 501.5 327 72.8
Ah.12g053810 Amaranthus hybridus HOM05D006116 ORTHO05D007795 1.0e-139 500.7 387 63.6
Gohir.D12G214400 Gossypium hirsutum HOM05D006116 ORTHO05D007795 1.7e-139 500.0 304 78.6
Aqoxy7G00869 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 2.9e-139 499.2 307 76.2
Eucgr.E00329 Eucalyptus grandis HOM05D006116 ORTHO05D007795 3.8e-139 498.8 406 62.3
Thecc.03G237000 Theobroma cacao HOM05D006116 ORTHO05D007795 6.5e-139 498.0 400 66.0
RcHm_v2.0_Chr7g0207741 Rosa chinensis HOM05D006116 ORTHO05D007795 8.5e-139 497.7 402 60.9
TWI60G0034 Tripterygium wilfordii HOM05D006116 ORTHO05D007795 7.2e-138 494.6 307 76.2
AUR62018802 Chenopodium quinoa HOM05D006116 ORTHO05D007795 2.1e-137 493.0 321 69.8
Sed0023369 Sechium edule HOM05D006116 ORTHO05D007795 2.1e-137 493.0 298 77.9
Nn1g00701 Nelumbo nucifera HOM05D006116 ORTHO05D007795 6.1e-137 491.5 296 78.4
Sc07g0009020 Simmondsia chinensis HOM05D006116 ORTHO05D007795 6.1e-137 491.5 400 61.2
unitig_21.g20374 Utricularia gibba HOM05D006116 ORTHO05D007795 6.1e-137 491.5 327 70.3
PSO675G1792 Papaver somniferum HOM05D006116 ORTHO05D007795 7.9e-137 491.1 324 73.1
PSO732G0356 Papaver somniferum HOM05D006116 ORTHO05D007795 7.9e-137 491.1 377 65.3
Lalb_Chr09g0329681 Lupinus albus HOM05D006116 ORTHO05D007795 2.3e-136 489.6 327 70.6
Thhalv10025290m.g Eutrema salsugineum HOM05D006116 ORTHO05D007795 3.9e-136 488.8 305 75.1
MSTRG.1960 Avicennia marina HOM05D006116 ORTHO05D007795 5.1e-136 488.4 377 64.7
A03p50320 Brassica napus HOM05D006116 ORTHO05D007795 1.5e-135 486.9 308 74.7
BraA03t14121Z Brassica rapa HOM05D006116 ORTHO05D007795 2.5e-135 486.1 308 74.4
CARHR223700 Cardamine hirsuta HOM05D006116 ORTHO05D007795 9.7e-135 484.2 303 74.9
Sp7g17070 Schrenkiella parvula HOM05D006116 ORTHO05D007795 9.7e-135 484.2 327 70.9
Zm00001eb075030 Zea mays HOM05D006116 ORTHO05D007795 9.7e-135 484.2 334 70.1
Os04g0542900 Oryza sativa ssp. japonica HOM05D006116 ORTHO05D007795 1.7e-134 483.4 334 69.2
Carub.0007s2428 Capsella rubella HOM05D006116 ORTHO05D007795 2.2e-134 483.0 301 75.4
Hund14464 Selenicereus undatus HOM05D006116 ORTHO05D007795 3.1e-133 479.2 406 59.9
AUR62007200 Chenopodium quinoa HOM05D006116 ORTHO05D007795 9.1e-133 477.6 303 71.3
AL7G37600 Arabidopsis lyrata HOM05D006116 ORTHO05D007795 2.2e-131 473.0 301 74.8
EL10Ac5g12218 Beta vulgaris HOM05D006116 ORTHO05D007795 9.4e-130 467.6 457 52.5
Manes.17G019700 Manihot esculenta HOM05D006116 ORTHO05D007795 9.4e-130 467.6 399 59.6
ClCG00G004790 Citrullus lanatus HOM05D006116 ORTHO05D007795 5.7e-127 458.4 396 63.1
ATR0829G115 Amborella trichopoda HOM05D006116 ORTHO05D007795 5.9e-124 448.4 379 59.9
SEGI_40490 Sequoiadendron giganteum HOM05D006116 ORTHO05D007795 9.4e-122 441.0 297 71.0
HPP92_020688 Vanilla planifolia HOM05D006116 ORTHO05D007795 1.0e-120 437.6 267 74.9
AagrBONN_evm.TU.Sc2ySwM_368.518 Anthoceros agrestis HOM05D006116 ORTHO05D007795 1.2e-111 407.5 377 55.4
Pp3c14_16100 Physcomitrium patens HOM05D006116 ORTHO05D007795 1.5e-111 407.1 331 58.6
Pp3c14_16101 Physcomitrium patens HOM05D006116 ORTHO05D007795 1.5e-111 407.1 331 58.6
CiPaw.12G058000 Carya illinoinensis HOM05D006116 ORTHO05D007795 8.3e-110 401.4 230 82.2
Mapoly0141s0023 Marchantia polymorpha HOM05D006116 ORTHO05D007795 1.2e-108 397.5 315 61.9
TAR375G0725 Trochodendron aralioides HOM05D006116 ORTHO05D007795 1.2e-108 397.5 246 77.6
SMO356G0030 Selaginella moellendorffii HOM05D006116 ORTHO05D007795 1.6e-105 387.1 304 60.9
Pp3c2_10960 Physcomitrium patens HOM05D006116 ORTHO05D007795 4.7e-105 385.6 323 59.4
Zm00001eb313880 Zea mays HOM05D006116 ORTHO05D007795 3.0e-104 382.9 274 66.4
Migut.E00812 Erythranthe guttata HOM05D006116 ORTHO05D007795 2.2e-102 376.7 220 78.6
TAR375G0708 Trochodendron aralioides HOM05D006116 ORTHO05D007795 2.4e-101 373.2 230 77.8
Zm00001eb091650 Zea mays HOM05D006116 ORTHO05D007795 6.6e-99 365.2 306 59.2
Psat4g077320 Pisum sativum HOM05D006116 ORTHO05D007795 8.0e-97 358.2 305 60.3
FAN13G0371 Fragaria x ananassa HOM05D006116 ORTHO05D007795 3.7e-94 349.4 302 59.9
BcaC06g33529 Brassica carinata HOM05D006116 ORTHO05D007795 5.6e-90 335.5 223 70.4
Zm00001eb319310 Zea mays HOM05D006116 ORTHO05D007795 7.5e-87 325.1 203 76.8
Haze_08334 Corylus avellana HOM05D006116 ORTHO05D007795 9.8e-87 324.7 209 73.7
Dinv28896 Davidia involucrata HOM05D006116 ORTHO05D007795 4.3e-74 282.7 197 71.1
Zm00001eb129530 Zea mays HOM05D006116 ORTHO05D007795 1.4e-72 277.7 205 64.4
Zm00001eb391960 Zea mays HOM05D006116 ORTHO05D007795 1.4e-72 277.7 205 64.4
CBR_g27781 Chara braunii HOM05D006116 ORTHO05D007795 4.9e-70 269.2 267 48.3
Cre14.g631900 Chlamydomonas reinhardtii HOM05D006116 ORTHO05D007795 1.0e-67 261.5 278 43.9
Atru.chr9.1147 Acer truncatum HOM05D006116 ORTHO05D007795 1.9e-58 230.7 120 86.7
Zm00001eb268110 Zea mays HOM05D006116 ORTHO05D007795 1.2e-47 194.9 196 50.0
Lsat_1_v5_gn_7_9401 Lactuca sativa HOM05D006116 ORTHO05D000290 2.9e-38 163.7 125 61.6
PSO732G0385 Papaver somniferum HOM05D006116 ORTHO05D007795 3.8e-38 163.3 133 59.4
Zm00001eb276710 Zea mays HOM05D006116 ORTHO05D007795 1.4e-37 161.4 131 58.8
Ca_20974_v3 Cicer arietinum L. HOM05D006116 ORTHO05D007795 9.6e-34 148.7 124 57.3
TAR375G0859 Trochodendron aralioides HOM05D006116 ORTHO05D007795 1.2e-31 141.7 70 91.4
EL10Ac5g12217 Beta vulgaris HOM05D006116 ORTHO05D007795 1.7e-30 137.9 75 78.7
DCAR_005654 Daucus carota HOM05D006116 ORTHO05D007795 2.9e-22 110.5 67 73.1
CAN.G507.3 Capsicum annuum HOM05D006116 ORTHO05D007795 2.5e-21 107.5 74 62.2
CDE11G0087 Ceratophyllum demersum HOM05D006116 ORTHO05D007795 8.2e-17 92.4 53 77.4
TAR375G0706 Trochodendron aralioides HOM05D006116 ORTHO05D009946 1.6e-12 78.2 78 52.6
Aqoxy6G01690 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 6.7e-11 72.8 120 30.8
Aqoxy7G03532 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 5.3e-08 63.2 59 47.5
BolC8t48435H Brassica oleracea HOM05D006116 ORTHO05D007795 2.6e-07 60.8 41 65.9


User provided reference genes

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