Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 0.0e+00 1106.3 568 100.0
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 3.9e-270 934.5 558 82.8
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 3.8e-257 891.3 536 83.0
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 1.4e-248 862.8 537 79.1
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 7.1e-248 860.5 557 77.2
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 7.9e-247 857.1 561 77.0
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 8.7e-246 853.6 539 79.8
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 1.1e-245 853.2 559 76.7
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 1.5e-245 852.8 557 75.9
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 3.3e-245 851.7 536 79.7
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 7.4e-245 850.5 560 76.2
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 7.4e-245 850.5 541 77.8
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 9.6e-245 850.1 557 77.0
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 1.6e-244 849.4 560 76.1
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 1.6e-244 849.4 559 76.9
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 2.8e-244 848.6 520 80.4
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 3.7e-244 848.2 556 76.3
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 3.7e-244 848.2 531 80.0
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 6.2e-244 847.4 515 80.0
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 8.2e-244 847.0 560 76.2
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 2.4e-243 845.5 555 76.6
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 3.1e-243 845.1 559 76.4
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 6.9e-243 844.0 560 76.4
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 9.0e-243 843.6 558 76.3
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 2.0e-242 842.4 570 73.9
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 3.4e-242 841.6 559 76.2
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 3.4e-242 841.6 515 80.4
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 1.0e-241 840.1 570 73.5
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 6.5e-241 837.4 519 80.7
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 1.9e-240 835.9 559 75.8
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 3.2e-240 835.1 517 79.7
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 7.1e-240 833.9 557 75.9
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 2.1e-239 832.4 559 74.6
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 3.5e-239 831.6 539 76.8
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 1.8e-238 829.3 536 75.7
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 8.7e-238 827.0 517 78.9
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.3e-237 825.1 517 78.9
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 2.8e-236 822.0 524 80.5
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 3.7e-236 821.6 536 76.9
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 8.2e-236 820.5 560 73.6
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 1.4e-235 819.7 537 76.4
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.8e-235 819.3 517 78.3
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.8e-235 819.3 522 78.0
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 2.4e-235 818.9 496 80.4
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 9.0e-235 817.0 517 78.1
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 1.2e-234 816.6 562 73.5
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 1.2e-234 816.6 479 83.3
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 7.6e-234 813.9 532 76.5
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 7.6e-234 813.9 532 76.7
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 1.3e-233 813.1 536 75.9
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 1.3e-233 813.1 536 75.7
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 1.3e-233 813.1 498 79.5
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 2.2e-233 812.4 512 78.9
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 2.2e-233 812.4 554 74.5
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 3.8e-233 811.6 533 76.2
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 1.1e-232 810.1 563 73.4
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 1.4e-232 809.7 563 73.4
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 2.1e-231 805.8 530 76.2
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 2.7e-231 805.4 536 75.7
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 6.1e-231 804.3 524 76.7
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 7.9e-231 803.9 491 80.9
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 1.8e-230 802.7 537 74.5
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 1.1e-229 800.0 537 74.3
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 1.1e-229 800.0 536 74.3
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 1.5e-229 799.7 536 75.0
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 1.5e-229 799.7 524 75.8
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 1.7e-228 796.2 557 71.6
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 4.8e-228 794.7 537 73.7
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 1.8e-227 792.7 563 70.5
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 2.4e-227 792.3 536 73.9
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 4.5e-226 788.1 544 73.5
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 8.5e-225 783.9 539 74.8
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 1.1e-224 783.5 526 74.3
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.4e-224 783.1 522 73.9
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 1.9e-224 782.7 536 72.4
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 3.2e-224 781.9 523 75.5
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 9.4e-224 780.4 559 70.3
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 2.7e-223 778.9 526 74.1
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 6.1e-223 777.7 563 68.7
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 2.3e-222 775.8 468 80.3
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 3.0e-222 775.4 533 73.4
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 3.9e-222 775.0 484 77.9
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 5.1e-222 774.6 538 72.5
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 1.5e-221 773.1 639 63.5
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 4.4e-221 771.5 536 71.5
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 1.7e-220 769.6 516 74.0
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 1.8e-219 766.1 537 71.7
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 3.1e-219 765.4 536 70.0
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 9.1e-219 763.8 563 68.9
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 2.0e-218 762.7 532 71.6
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 2.6e-218 762.3 559 68.0
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 1.0e-217 760.4 467 80.3
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 1.4e-216 756.5 527 73.4
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 1.9e-216 756.1 524 72.3
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 7.2e-216 754.2 561 69.0
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 8.0e-215 750.7 528 70.5
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 8.0e-215 750.7 528 70.5
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 3.3e-213 745.3 540 71.1
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 1.7e-212 743.0 530 71.3
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 2.4e-211 739.2 565 68.3
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 3.8e-209 731.9 555 67.4
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 1.1e-208 730.3 539 71.1
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 1.1e-208 730.3 535 68.2
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 1.5e-208 729.9 522 70.5
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 1.9e-208 729.6 522 71.5
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 1.8e-206 723.0 561 66.3
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 2.3e-206 722.6 506 73.1
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 4.0e-206 721.8 540 67.8
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 1.3e-204 716.8 522 69.2
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 3.7e-204 715.3 522 69.0
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 3.7e-204 715.3 522 68.6
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 3.1e-203 712.2 522 68.6
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 2.9e-201 705.7 545 66.6
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 5.0e-201 704.9 404 83.2
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 1.5e-200 703.4 523 68.1
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 5.7e-197 691.4 561 64.5
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 2.9e-193 679.1 522 67.6
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.4e-190 670.2 550 64.2
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 5.2e-190 668.3 571 61.1
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 2.6e-189 666.0 571 61.3
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 8.6e-185 651.0 490 67.3
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 4.9e-180 635.2 400 74.8
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 4.1e-179 632.1 525 62.9
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 8.6e-177 624.4 506 63.8
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 9.2e-171 604.4 375 80.8
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 2.5e-168 596.3 543 58.9
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 1.1e-163 580.9 416 72.1
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.1e-162 576.6 536 59.7
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 1.3e-161 573.9 507 59.8
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 5.8e-157 558.5 554 53.8
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 4.3e-152 542.3 433 67.2
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.2e-151 540.8 548 53.1
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 3.1e-150 536.2 373 73.5
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 4.6e-138 495.7 563 48.1
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 5.1e-137 492.3 471 56.3
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 1.1e-134 484.6 394 67.3
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 6.4e-132 475.3 544 47.6
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 6.0e-130 468.8 544 49.3
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 1.0e-129 468.0 386 64.2
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 4.8e-111 406.0 324 67.3
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.7e-103 380.9 304 58.9
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 2.2e-100 370.5 622 39.1
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 3.3e-96 356.7 599 39.4
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 4.5e-77 293.1 166 89.8
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 1.5e-64 251.5 242 57.9
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 5.0e-60 236.5 240 56.2
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 5.2e-57 226.5 457 32.4
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 1.1e-49 202.2 470 32.3
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 6.4e-47 193.0 407 32.7
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 4.1e-46 190.3 111 85.6
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.2e-45 188.7 377 35.8
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 1.7e-44 184.9 91 93.4
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 2.8e-42 177.6 172 63.4
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 4.4e-40 170.2 92 80.4
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 2.2e-39 167.9 172 50.6
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 1.9e-38 164.9 160 62.5
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 1.6e-37 161.8 412 29.6
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 2.7e-37 161.0 159 55.3
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 1.0e-36 159.1 158 56.3
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 1.7e-23 115.2 86 59.3
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 1.6e-21 108.6 162 41.4
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.1e-11 75.9 35 91.4
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.9e-11 75.1 38 81.6
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 1.3e-10 72.4 38 81.6
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 1.4e-09 68.9 43 67.4
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 3.1e-09 67.8 33 81.8
HPP92_028318 Vanilla planifolia HOM05D005323 ORTHO05D006820 7.6e-08 63.2 192 25.0
HPP92_017571 Vanilla planifolia HOM05D005323 ORTHO05D006820 1.7e-07 62.0 297 22.6
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 2.9e-07 61.2 109 38.5
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 2.9e-07 61.2 188 25.5
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 6.5e-07 60.1 192 25.0
FvH4_4g16870 Fragaria vesca HOM05D002999 ORTHO05D003137 1.1e-06 59.3 216 27.8
Nitab4.5_0002913g0040 Nicotiana tabacum HOM05D005323 ORTHO05D006820 1.9e-06 58.5 191 25.7
Nitab4.5_0000285g0060 Nicotiana tabacum HOM05D005323 ORTHO05D006820 5.5e-06 57.0 191 25.7
Pp3c6_28640 Physcomitrium patens HOM05D005323 ORTHO05D006820 9.3e-06 56.2 198 24.2


User provided reference genes

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