Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A221T69 Lonicera japonica HOM05D000141 ORTHO05D001860 1.3e-98 363.6 262 100.0
Nitab4.5_0013184g0030 Nicotiana tabacum HOM05D000141 ORTHO05D001860 9.9e-27 124.8 261 39.5
MSTRG.11983 Avicennia marina HOM05D000141 ORTHO05D001860 6.4e-26 122.1 119 63.0
Nitab4.5_0001615g0170 Nicotiana tabacum HOM05D000141 ORTHO05D001860 8.3e-26 121.7 261 38.7
Rhsim07G0090500 Rhododendron simsii HOM05D000141 ORTHO05D001860 1.4e-25 120.9 261 37.2
Solyc08g081100.4 Solanum lycopersicum HOM05D000141 ORTHO05D001860 1.2e-24 117.9 265 37.4
Cc08_g14760 Coffea canephora HOM05D000141 ORTHO05D001860 2.7e-24 116.7 135 55.6
Peaxi162Scf00119g00946 Petunia axillaris HOM05D000141 ORTHO05D001860 1.0e-23 114.8 260 37.7
Sopen08g029420 Solanum pennellii HOM05D000141 ORTHO05D001860 1.3e-23 114.4 254 38.2
vmacro13958 Vaccinium macrocarpon HOM05D000141 ORTHO05D001860 1.3e-23 114.4 261 36.0
Actinidia14563 Actinidia chinensis HOM05D000141 ORTHO05D001860 2.3e-23 113.6 262 36.6
Hma1.2p1_0377F.1_g139280 Hydrangea macrophylla HOM05D000141 ORTHO05D001860 5.1e-23 112.5 125 56.8
Migut.A00761 Erythranthe guttata HOM05D000141 ORTHO05D001860 1.1e-22 111.3 123 53.7
PGSC0003DMG400012206 Solanum tuberosum HOM05D000141 ORTHO05D001860 1.1e-22 111.3 254 37.0
CAN.G774.46 Capsicum annuum HOM05D000141 ORTHO05D001860 9.6e-22 108.2 262 36.6
CSS0022971 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001860 2.1e-21 107.1 261 35.2
CSS0028635 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001860 2.8e-21 106.7 126 55.6
CSS0047289 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001860 2.8e-21 106.7 126 55.6
SGA_v2.0_scaffold173G39185 Striga asiatica HOM05D000141 ORTHO05D001860 4.7e-21 105.9 261 37.5
Lj2C187G2 Lonicera japonica HOM05D000141 ORTHO05D001860 8.1e-21 105.1 268 36.2
TAR374G0639 Trochodendron aralioides HOM05D000141 ORTHO05D001860 1.8e-20 104.0 261 34.5
TAR629G2026 Trochodendron aralioides HOM05D000141 ORTHO05D001860 5.2e-20 102.4 129 51.2
TAR375G0473 Trochodendron aralioides HOM05D000141 ORTHO05D001860 6.8e-20 102.1 129 50.4
Actinidia27381 Actinidia chinensis HOM05D000141 ORTHO05D001860 8.9e-20 101.7 260 33.5
PSO478G1443 Papaver somniferum HOM05D000141 ORTHO05D001860 8.9e-20 101.7 123 52.0
PSO782G3574 Papaver somniferum HOM05D000141 ORTHO05D001860 8.9e-20 101.7 123 52.0
TWI15G0349 Tripterygium wilfordii HOM05D000141 ORTHO05D001860 1.2e-19 101.3 257 35.8
QL12p032934 Quercus lobata HOM05D000141 ORTHO05D001860 1.5e-19 100.9 129 48.8
Aqoxy7G00325 Aquilegia oxysepala HOM05D000141 ORTHO05D001860 2.6e-19 100.1 129 49.6
Haze_08780 Corylus avellana HOM05D000141 ORTHO05D001860 5.8e-19 99.0 129 48.8
ECA233G1024 Erigeron canadensis HOM05D000141 ORTHO05D001860 5.8e-19 99.0 149 46.3
PGR031G0249 Punica granatum HOM05D000141 ORTHO05D001860 1.7e-18 97.4 132 50.0
Lalb_Chr05g0224751 Lupinus albus HOM05D000141 ORTHO05D001860 2.9e-18 96.7 128 49.2
MBI04_g06594_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001860 2.9e-18 96.7 129 48.8
Cfa012227 Carpinus fangiana HOM05D000141 ORTHO05D001860 3.8e-18 96.3 128 49.2
Dinv38943 Davidia involucrata HOM05D000141 ORTHO05D001860 3.8e-18 96.3 129 51.2
Nn5g28325 Nelumbo nucifera HOM05D000141 ORTHO05D001860 6.4e-18 95.5 118 53.4
SGA_v2.0_scaffold96G28934 Striga asiatica HOM05D000141 ORTHO05D001860 6.4e-18 95.5 130 50.0
Nn3g18610 Nelumbo nucifera HOM05D000141 ORTHO05D001860 1.4e-17 94.4 120 50.0
CiPaw.11G135100 Carya illinoinensis HOM05D000141 ORTHO05D001860 4.2e-17 92.8 259 32.8
CiPaw.12G093000 Carya illinoinensis HOM05D000141 ORTHO05D001860 4.2e-17 92.8 266 33.1
CANSAT21G0110 Cannabis sativa HOM05D000141 ORTHO05D001860 7.1e-17 92.0 129 50.4
CANSAT21G1366 Cannabis sativa HOM05D000141 ORTHO05D001860 7.1e-17 92.0 129 50.4
AUR62017198 Chenopodium quinoa HOM05D000141 ORTHO05D001860 7.1e-17 92.0 128 50.0
TWI60G1186 Tripterygium wilfordii HOM05D000141 ORTHO05D001860 7.1e-17 92.0 258 34.9
Atru.chr9.2187 Acer truncatum HOM05D000141 ORTHO05D001860 9.3e-17 91.7 264 33.0
AUR62010684 Chenopodium quinoa HOM05D000141 ORTHO05D001860 1.6e-16 90.9 128 50.0
BcaC04g22695 Brassica carinata HOM05D000141 ORTHO05D001860 2.1e-16 90.5 125 48.8
C09p16450 Brassica napus HOM05D000141 ORTHO05D001860 2.1e-16 90.5 125 48.8
BcaB07g31560 Brassica carinata HOM05D000141 ORTHO05D001860 3.5e-16 89.7 125 48.0
BcaB07g31406 Brassica carinata HOM05D000141 ORTHO05D001860 6.0e-16 89.0 125 47.2
CARHR047700 Cardamine hirsuta HOM05D000141 ORTHO05D001860 1.3e-15 87.8 127 49.6
Thhalv10027628m.g Eutrema salsugineum HOM05D000141 ORTHO05D001860 1.3e-15 87.8 125 48.8
Glyma.08G014800 Glycine max HOM05D000141 ORTHO05D001860 1.3e-15 87.8 255 34.1
BcaB07g31565 Brassica carinata HOM05D007656 ORTHO05D008529 1.7e-15 87.4 125 47.2
BcaB07g31573 Brassica carinata HOM05D000141 ORTHO05D001860 1.7e-15 87.4 125 47.2
BolC9t54556H Brassica oleracea HOM05D000141 ORTHO05D001860 1.7e-15 87.4 125 48.0
Manes.02G021900 Manihot esculenta HOM05D000141 ORTHO05D001860 1.7e-15 87.4 130 50.0
Psat7g033040 Pisum sativum HOM05D000141 ORTHO05D001860 1.7e-15 87.4 128 46.9
A09p15410 Brassica napus HOM05D000141 ORTHO05D001860 3.0e-15 86.7 126 48.4
BraA09t37183Z Brassica rapa HOM05D000141 ORTHO05D001860 3.0e-15 86.7 126 48.4
Glyma.05G208100 Glycine max HOM05D000141 ORTHO05D001860 3.0e-15 86.7 255 32.5
AT1G63640 Arabidopsis thaliana HOM05D000141 ORTHO05D001860 3.9e-15 86.3 125 47.2
Ca_17531_v3 Cicer arietinum L. HOM05D000141 ORTHO05D001860 3.9e-15 86.3 262 32.4
A09p13770 Brassica napus HOM05D000141 ORTHO05D001860 5.1e-15 85.9 125 47.2
BraA09t37030Z Brassica rapa HOM05D000141 ORTHO05D001860 5.1e-15 85.9 125 47.2
Cpa.g.sc74.53 Carica papaya HOM05D000141 ORTHO05D001860 6.6e-15 85.5 108 50.9
Eucgr.D01842 Eucalyptus grandis HOM05D000141 ORTHO05D001860 6.6e-15 85.5 130 47.7
C09p18680 Brassica napus HOM05D000141 ORTHO05D001860 8.7e-15 85.1 126 46.8
Sp2g01030 Schrenkiella parvula HOM05D000141 ORTHO05D001860 8.7e-15 85.1 125 47.2
BcaC04g22495 Brassica carinata HOM05D000141 ORTHO05D001860 1.1e-14 84.7 126 46.8
BolC9t54765H Brassica oleracea HOM05D000141 ORTHO05D001860 1.1e-14 84.7 126 46.8
Medtr8g098230 Medicago truncatula HOM05D000141 ORTHO05D001860 1.1e-14 84.7 121 46.3
AL2G11600 Arabidopsis lyrata HOM05D000141 ORTHO05D001860 1.9e-14 84.0 125 47.2
DCAR_000615 Daucus carota HOM05D000449 ORTHO05D000360 1.9e-14 84.0 131 45.0
Lj4g0003055 Lotus japonicus HOM05D000141 ORTHO05D001860 1.9e-14 84.0 118 50.8
Ciclev10018623m.g Citrus clementina HOM05D000141 ORTHO05D001860 2.5e-14 83.6 122 48.4
HanXRQChr13g0394261 Helianthus annuus HOM05D000141 ORTHO05D001860 2.5e-14 83.6 128 46.1
FAN13G3278 Fragaria x ananassa HOM05D000141 ORTHO05D001860 3.3e-14 83.2 126 46.0
Dinv37639 Davidia involucrata HOM05D000141 ORTHO05D001860 4.3e-14 82.8 93 53.8
Lalb_Chr16g0390001 Lupinus albus HOM05D000141 ORTHO05D001860 4.3e-14 82.8 121 47.9
Phvul.002G289700 Phaseolus vulgaris HOM05D000141 ORTHO05D001860 9.6e-14 81.6 124 49.2
arahy.Tifrunner.gnm1.ann1.Z2QY1L Arachis hypogaea HOM05D000141 ORTHO05D001860 1.3e-13 81.3 128 47.7
ATR0705G028 Amborella trichopoda HOM05D000141 ORTHO05D001860 1.6e-13 80.9 118 45.8
FAN08G1054 Fragaria x ananassa HOM05D000141 ORTHO05D001860 1.6e-13 80.9 127 44.9
FAN18G1325 Fragaria x ananassa HOM05D000141 ORTHO05D001860 2.1e-13 80.5 127 44.9
Sc01g0009580 Simmondsia chinensis HOM05D000141 ORTHO05D001860 2.1e-13 80.5 264 32.6
VMungo0251G0114 Vigna mungo HOM05D000141 ORTHO05D001860 2.1e-13 80.5 262 32.8
FvH4_5g02480 Fragaria vesca HOM05D000141 ORTHO05D001860 2.8e-13 80.1 127 44.9
CsaV3_5G002790 Cucumis sativus L. HOM05D000141 ORTHO05D001860 3.6e-13 79.7 56 69.6
Oeu064087.2 Olea europaea HOM05D000141 ORTHO05D001860 3.6e-13 79.7 184 36.4
GSVIVG01019753001 Vitis vinifera HOM05D000141 ORTHO05D001860 3.6e-13 79.7 115 50.4
Aa31LG2G850 Aethionema arabicum HOM05D000141 ORTHO05D001860 4.8e-13 79.3 256 31.2
arahy.Tifrunner.gnm1.ann1.LDZ3RE Arachis hypogaea HOM05D000141 ORTHO05D001860 4.8e-13 79.3 129 46.5
TPR.G12809 Trifolium pratense HOM05D000141 ORTHO05D001860 4.8e-13 79.3 128 45.3
FAN04G0301 Fragaria x ananassa HOM05D000141 ORTHO05D001860 8.1e-13 78.6 126 43.7
Potri.003G127800 Populus trichocarpa HOM05D000141 ORTHO05D001860 8.1e-13 78.6 129 48.1
Sabra03G0091000 Salix brachista HOM05D000141 ORTHO05D001860 8.1e-13 78.6 123 50.4
Actinidia33751 Actinidia chinensis HOM05D000141 ORTHO05D001860 1.4e-12 77.8 204 34.8
Ah.12g056890 Amaranthus hybridus HOM05D000141 ORTHO05D001860 1.8e-12 77.4 59 67.8
BcaB07g31569 Brassica carinata HOM05D000141 ORTHO05D001860 1.8e-12 77.4 120 45.0
COL.COLO4_34467 Corchorus olitorius HOM05D000141 ORTHO05D001860 2.4e-12 77.0 130 44.6
MELO3C005678.2 Cucumis melo HOM05D000141 ORTHO05D001860 3.1e-12 76.6 56 67.9
Duzib084G0842 Durio zibethinus HOM05D000141 ORTHO05D001860 3.1e-12 76.6 123 46.3
EL10Ac5g13063 Beta vulgaris HOM05D000141 ORTHO05D001860 4.0e-12 76.3 59 67.8
Sed0006706 Sechium edule HOM05D000141 ORTHO05D001860 6.9e-12 75.5 127 40.9
Gohir.A03G016500 Gossypium hirsutum HOM05D000141 ORTHO05D001860 9.0e-12 75.1 111 46.8
Hund14800 Selenicereus undatus HOM05D000141 ORTHO05D001860 1.2e-11 74.7 62 62.9
THA.LOC104809394 Tarenaya hassleriana HOM05D000141 ORTHO05D001860 1.5e-11 74.3 120 44.2
Gohir.D03G151400 Gossypium hirsutum HOM05D000141 ORTHO05D001860 2.0e-11 73.9 111 46.8
Potri.001G104000 Populus trichocarpa HOM05D000141 ORTHO05D001860 2.0e-11 73.9 127 47.2
Sed0014958 Sechium edule HOM05D000141 ORTHO05D001860 2.0e-11 73.9 135 41.5
MSTRG.1864 Avicennia marina HOM05D000141 ORTHO05D001860 3.4e-11 73.2 135 40.7
Carub.0002s0122 Capsella rubella HOM05D000141 ORTHO05D001860 3.4e-11 73.2 49 75.5
Gorai.003G158800 Gossypium raimondii HOM05D000141 ORTHO05D001860 5.8e-11 72.4 109 46.8
MD14G1105100 Malus domestica HOM05D000141 ORTHO05D001860 7.6e-11 72.0 187 31.0
Hund11467 Selenicereus undatus HOM05D000141 ORTHO05D001860 7.6e-11 72.0 55 65.5
RcHm_v2.0_Chr7g0197651 Rosa chinensis HOM05D000141 ORTHO05D001860 1.3e-10 71.2 268 30.2
Duzib205G0527 Durio zibethinus HOM05D000141 ORTHO05D001860 2.2e-10 70.5 123 44.7
Cfa019777 Carpinus fangiana HOM05D000141 ORTHO05D001860 2.9e-10 70.1 128 42.2
Haze_18673 Corylus avellana HOM05D000141 ORTHO05D001860 2.9e-10 70.1 116 42.2
Thecc.03G278900 Theobroma cacao HOM05D000141 ORTHO05D001860 3.8e-10 69.7 263 30.8
Aa31LG9G630 Aethionema arabicum HOM05D000141 ORTHO05D001860 4.9e-10 69.3 79 55.7
RcHm_v2.0_Chr5g0040651 Rosa chinensis HOM05D000141 ORTHO05D001860 1.9e-09 67.4 199 32.7
SEGI_04506 Sequoiadendron giganteum HOM05D000141 ORTHO05D001860 1.9e-09 67.4 132 36.4
AT5G41310 Arabidopsis thaliana HOM05D000141 ORTHO05D001860 2.4e-09 67.0 78 51.3
CDE05G2866 Ceratophyllum demersum HOM05D000141 ORTHO05D001860 3.2e-09 66.6 118 43.2
Carub.0007s3419 Capsella rubella HOM05D000141 ORTHO05D001860 7.1e-09 65.5 78 51.3
AL7G48150 Arabidopsis lyrata HOM05D000141 ORTHO05D001860 1.2e-08 64.7 55 65.5
Prupe.5G221200 Prunus persica HOM05D000141 ORTHO05D001860 1.2e-08 64.7 110 40.9
Lsat_1_v5_gn_6_6561 Lactuca sativa HOM05D000141 ORTHO05D001860 2.1e-08 63.9 130 40.8
Prupe.5G100400 Prunus persica HOM05D000141 ORTHO05D001860 2.7e-08 63.5 46 71.7
Hma1.2p1_0653F.1_g196300 Hydrangea macrophylla HOM05D000141 ORTHO05D001860 3.5e-08 63.2 58 56.9
RcHm_v2.0_Chr7g0185451 Rosa chinensis HOM05D000141 ORTHO05D001860 3.5e-08 63.2 101 43.6
MD06G1083300 Malus domestica HOM05D000141 ORTHO05D001860 4.6e-08 62.8 187 28.9
Nn1g09524 Nelumbo nucifera HOM05D000141 ORTHO05D001860 7.8e-08 62.0 129 38.0
FAN04G1298 Fragaria x ananassa HOM05D000141 ORTHO05D001860 2.3e-07 60.5 93 43.0
TWI60G0408 Tripterygium wilfordii HOM05D000141 ORTHO05D001860 3.9e-07 59.7 119 42.0
FAN08G0207 Fragaria x ananassa HOM05D000141 ORTHO05D001860 6.6e-07 58.9 93 43.0
Lj5C148T5 Lonicera japonica HOM05D000141 ORTHO05D001860 6.6e-07 58.9 103 38.8
Manes.01G060600 Manihot esculenta HOM05D000141 ORTHO05D001860 6.6e-07 58.9 111 41.4
FvH4_5g12130 Fragaria vesca HOM05D000141 ORTHO05D001860 8.7e-07 58.5 93 43.0
FAN18G1630 Fragaria x ananassa HOM05D000141 ORTHO05D001860 8.7e-07 58.5 93 43.0
Ah.02g116660 Amaranthus hybridus HOM05D000141 ORTHO05D001860 1.9e-06 57.4 107 45.8
FAN13G0310 Fragaria x ananassa HOM05D000141 ORTHO05D001860 1.9e-06 57.4 93 41.9
Zm00001eb277550 Zea mays HOM05D000141 ORTHO05D001860 3.3e-06 56.6 109 40.4
QL10p025328 Quercus lobata HOM05D000141 ORTHO05D001860 4.3e-06 56.2 110 40.0


User provided reference genes

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