Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A217T73 Lonicera japonica HOM05D003450 ORTHO05D004150 0.0e+00 1557.0 796 100.0
Lj5C248G9 Lonicera japonica HOM05D003450 ORTHO05D004150 1.5e-291 1006.1 717 77.7
GSVIVG01000649001 Vitis vinifera HOM05D003450 ORTHO05D004150 1.4e-286 989.6 717 73.4
Dinv37611 Davidia involucrata HOM05D003450 ORTHO05D004150 1.0e-284 983.4 718 74.2
QL02p074015 Quercus lobata HOM05D003450 ORTHO05D004150 1.1e-283 979.9 718 72.4
CSS0002385 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 8.4e-279 963.8 718 72.6
CiPaw.09G022500 Carya illinoinensis HOM05D003450 ORTHO05D004150 2.1e-277 959.1 718 71.9
Cfa007340 Carpinus fangiana HOM05D003450 ORTHO05D004150 6.0e-277 957.6 718 71.4
QL03p035003 Quercus lobata HOM05D003450 ORTHO05D004150 6.0e-277 957.6 718 71.0
Hma1.2p1_1136F.1_g260470 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 1.5e-275 953.0 719 72.2
Gorai.012G065100 Gossypium raimondii HOM05D003450 ORTHO05D004150 2.8e-274 948.7 718 71.3
TAR623G1303 Trochodendron aralioides HOM05D003450 ORTHO05D004150 2.8e-274 948.7 722 70.6
Haze_14757 Corylus avellana HOM05D003450 ORTHO05D004150 4.8e-274 948.0 718 70.8
Thecc.04G019300 Theobroma cacao HOM05D003450 ORTHO05D004150 1.4e-273 946.4 718 72.0
Potri.001G343500 Populus trichocarpa HOM05D003450 ORTHO05D004150 9.0e-273 943.7 718 70.5
Sabra16G0222800 Salix brachista HOM05D003450 ORTHO05D004150 9.9e-272 940.3 718 70.9
Eucgr.I01732 Eucalyptus grandis HOM05D003450 ORTHO05D004150 3.8e-271 938.3 718 70.2
Peaxi162Scf00074g01921 Petunia axillaris HOM05D003450 ORTHO05D004150 7.1e-270 934.1 717 70.0
Manes.17G111200 Manihot esculenta HOM05D003450 ORTHO05D004150 3.5e-269 931.8 717 69.6
Prupe.3G293600 Prunus persica HOM05D003450 ORTHO05D004150 2.3e-268 929.1 718 70.6
TWI56G0323 Tripterygium wilfordii HOM05D003450 ORTHO05D004150 3.9e-268 928.3 717 70.2
MD09G1023300 Malus domestica HOM05D003450 ORTHO05D004150 5.1e-268 927.9 717 69.9
MD17G1022800 Malus domestica HOM05D003450 ORTHO05D004150 6.7e-268 927.5 717 69.6
RcHm_v2.0_Chr2g0173241 Rosa chinensis HOM05D003450 ORTHO05D004150 9.6e-267 923.7 718 69.5
Duzib147G0628 Durio zibethinus HOM05D003450 ORTHO05D004150 4.8e-266 921.4 718 70.1
FAN05G3254 Fragaria x ananassa HOM05D003450 ORTHO05D004150 1.8e-265 919.5 718 69.5
Nitab4.5_0006540g0050 Nicotiana tabacum HOM05D003450 ORTHO05D004150 1.8e-265 919.5 730 68.8
PGR142G3144 Punica granatum HOM05D003450 ORTHO05D004150 2.4e-265 919.1 718 69.9
Migut.E01197 Erythranthe guttata HOM05D003450 ORTHO05D004150 3.1e-265 918.7 718 69.4
Manes.15G151800 Manihot esculenta HOM05D003450 ORTHO05D004150 6.9e-265 917.5 695 70.6
FvH4_6g51710 Fragaria vesca HOM05D003450 ORTHO05D004150 1.2e-264 916.8 718 69.1
Lsat_1_v5_gn_3_9121 Lactuca sativa HOM05D003450 ORTHO05D004150 1.2e-264 916.8 723 69.8
Sopen08g029730 Solanum pennellii HOM05D003450 ORTHO05D004150 1.5e-264 916.4 717 68.9
FAN14G2265 Fragaria x ananassa HOM05D003450 ORTHO05D004150 3.4e-264 915.2 718 68.9
MELO3C021591.2 Cucumis melo HOM05D003450 ORTHO05D004150 4.5e-264 914.8 718 70.1
Cc08_g15080 Coffea canephora HOM05D003450 ORTHO05D004150 5.8e-264 914.4 718 68.8
Nitab4.5_0002282g0060 Nicotiana tabacum HOM05D003450 ORTHO05D004150 7.6e-264 914.1 719 68.8
Nn2g10559 Nelumbo nucifera HOM05D003450 ORTHO05D004150 2.2e-263 912.5 721 68.2
Ciclev10014189m.g Citrus clementina HOM05D003450 ORTHO05D004150 1.1e-262 910.2 718 68.7
Lj2g0026665 Lotus japonicus HOM05D003450 ORTHO05D004150 1.1e-262 910.2 718 68.5
CANSAT64G2043 Cannabis sativa HOM05D003450 ORTHO05D004150 3.2e-262 908.7 732 68.0
CAN.G532.15 Capsicum annuum HOM05D003450 ORTHO05D004150 9.3e-262 907.1 717 68.8
Oeu042349.1 Olea europaea HOM05D003450 ORTHO05D004150 6.0e-261 904.4 718 68.1
MSTRG.11963 Avicennia marina HOM05D003450 ORTHO05D004150 1.3e-260 903.3 718 68.5
CsaV3_5G027040 Cucumis sativus L. HOM05D003450 ORTHO05D004150 2.8e-258 895.6 718 68.7
Lalb_Chr18g0055341 Lupinus albus HOM05D003450 ORTHO05D004150 2.8e-258 895.6 719 67.7
Sed0008503 Sechium edule HOM05D003450 ORTHO05D004150 8.2e-258 894.0 718 68.5
Glyma.19G003200 Glycine max HOM05D003450 ORTHO05D004150 1.1e-257 893.6 717 68.2
SGA_v2.0_scaffold76G25156 Striga asiatica HOM05D003450 ORTHO05D004150 3.1e-257 892.1 719 67.5
Glyma.19G056700 Glycine max HOM05D003450 ORTHO05D004150 4.0e-257 891.7 718 67.7
Phvul.004G005200 Phaseolus vulgaris HOM05D003450 ORTHO05D004150 6.9e-257 891.0 752 65.6
Ca_04147_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 1.5e-256 889.8 716 66.9
Ca_30596_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 1.5e-256 889.8 716 66.9
HanXRQChr17g0533281 Helianthus annuus HOM05D003450 ORTHO05D004150 1.3e-255 886.7 720 68.5
ECA246G5325 Erigeron canadensis HOM05D003450 ORTHO05D004150 2.2e-255 885.9 720 68.5
Sed0014883 Sechium edule HOM05D003450 ORTHO05D004150 3.8e-255 885.2 718 68.2
Psat1g053760 Pisum sativum HOM05D003450 ORTHO05D004150 1.1e-254 883.6 717 67.4
Medtr6g004510 Medicago truncatula HOM05D003450 ORTHO05D004150 1.2e-253 880.2 716 66.9
TPR.G31948 Trifolium pratense HOM05D003450 ORTHO05D004150 1.2e-253 880.2 716 67.0
VMungo0464G1019 Vigna mungo HOM05D003450 ORTHO05D004150 2.1e-253 879.4 717 67.5
DCAR_004619 Daucus carota HOM05D003450 ORTHO05D004150 1.3e-252 876.7 719 66.9
arahy.Tifrunner.gnm1.ann1.Q7XHAR Arachis hypogaea HOM05D003450 ORTHO05D004150 1.8e-252 876.3 762 63.8
vmacro11398 Vaccinium macrocarpon HOM05D003450 ORTHO05D004150 2.3e-252 875.9 790 64.2
AUR62009512 Chenopodium quinoa HOM05D003450 ORTHO05D004150 4.8e-250 868.2 725 64.7
ClCG09G019370 Citrullus lanatus HOM05D003450 ORTHO05D004150 6.3e-250 867.8 718 67.3
Sc07g0005180 Simmondsia chinensis HOM05D003450 ORTHO05D004150 1.1e-249 867.1 718 64.9
FAN09G1073 Fragaria x ananassa HOM05D003450 ORTHO05D004150 1.4e-249 866.7 718 66.6
MBI14_g36922_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 9.0e-249 864.0 721 65.2
Lalb_Chr15g0086731 Lupinus albus HOM05D003450 ORTHO05D004150 2.0e-248 862.8 718 65.2
arahy.Tifrunner.gnm1.ann1.F3BVF1 Arachis hypogaea HOM05D003450 ORTHO05D004150 2.6e-248 862.4 748 63.6
SalBow8G1997 Salvia bowleyana HOM05D003450 ORTHO05D004150 4.5e-248 861.7 721 65.2
FAN02G3092 Fragaria x ananassa HOM05D003450 ORTHO05D004150 2.2e-247 859.4 728 65.2
Hma1.2p1_1172F.1_g263680 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 6.5e-247 857.8 627 73.8
Duzib264G1290 Durio zibethinus HOM05D003450 ORTHO05D004150 8.5e-247 857.4 656 70.3
Aqoxy6G00591 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 1.8e-244 849.7 721 64.1
AUR62034774 Chenopodium quinoa HOM05D003450 ORTHO05D004150 6.7e-244 847.8 728 63.3
PSO421G0225 Papaver somniferum HOM05D003450 ORTHO05D004150 1.1e-241 840.5 720 64.3
A06p41100 Brassica napus HOM05D003450 ORTHO05D004150 9.1e-241 837.4 719 63.6
BraA06t27033Z Brassica rapa HOM05D003450 ORTHO05D004150 9.1e-241 837.4 719 63.6
Ah.02g116930 Amaranthus hybridus HOM05D003450 ORTHO05D004150 1.2e-240 837.0 719 63.4
CARHR148900 Cardamine hirsuta HOM05D003450 ORTHO05D004150 1.5e-240 836.6 719 63.8
BcaC06g30980 Brassica carinata HOM05D003450 ORTHO05D004150 2.0e-240 836.3 719 63.4
C07p36640 Brassica napus HOM05D003450 ORTHO05D004150 2.0e-240 836.3 719 63.4
BcaC06g33806 Brassica carinata HOM05D003450 ORTHO05D004150 5.9e-240 834.7 719 63.4
ECA233G1844 Erigeron canadensis HOM05D003450 ORTHO05D004150 5.9e-240 834.7 717 64.0
THA.LOC104823952 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 5.9e-240 834.7 724 63.5
BolC7t44182H Brassica oleracea HOM05D003450 ORTHO05D004150 7.7e-240 834.3 720 63.3
THA.LOC104825318 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 7.7e-240 834.3 717 64.2
PSO063G0895 Papaver somniferum HOM05D003450 ORTHO05D004150 1.9e-238 829.7 719 63.1
BolC2t11498H Brassica oleracea HOM05D003450 ORTHO05D004150 3.2e-238 828.9 720 62.4
C02p54300 Brassica napus HOM05D003450 ORTHO05D004150 7.2e-238 827.8 720 62.4
Aa31LG2G5130 Aethionema arabicum HOM05D003450 ORTHO05D004150 9.4e-238 827.4 720 62.9
Hund15478 Selenicereus undatus HOM05D003450 ORTHO05D004150 1.2e-237 827.0 722 63.6
SalBow8G1100 Salvia bowleyana HOM05D003450 ORTHO05D004150 4.6e-237 825.1 718 63.0
BraA02t08553Z Brassica rapa HOM05D003450 ORTHO05D004150 1.0e-236 823.9 720 62.4
A02p35530 Brassica napus HOM05D003450 ORTHO05D004150 8.8e-236 820.8 720 62.4
BcaC03g17471 Brassica carinata HOM05D003450 ORTHO05D004150 5.7e-235 818.1 721 61.9
BcaB07g30154 Brassica carinata HOM05D003450 ORTHO05D004150 7.4e-235 817.8 720 62.2
AL5G16950 Arabidopsis lyrata HOM05D003450 ORTHO05D004150 2.5e-230 802.7 719 61.8
Thhalv10003626m.g Eutrema salsugineum HOM05D003450 ORTHO05D004150 2.5e-230 802.7 719 61.8
Sp2g16700 Schrenkiella parvula HOM05D003450 ORTHO05D004150 1.2e-229 800.4 719 61.3
Atru.chr6.2426 Acer truncatum HOM05D003450 ORTHO05D004150 4.7e-229 798.5 580 74.5
AT3G27530 Arabidopsis thaliana HOM05D003450 ORTHO05D004150 1.5e-227 793.5 719 61.3
unitig_61.g26360 Utricularia gibba HOM05D003450 ORTHO05D004150 2.6e-227 792.7 718 60.9
Carub.0005s0596 Capsella rubella HOM05D003450 ORTHO05D004150 9.7e-227 790.8 720 61.1
Solyc08g081410.3 Solanum lycopersicum HOM05D003450 ORTHO05D004150 2.5e-222 776.2 717 60.8
EL10Ac5g11313 Beta vulgaris HOM05D003450 ORTHO05D004150 1.4e-220 770.4 687 61.6
ATR0068G094 Amborella trichopoda HOM05D003450 ORTHO05D004150 9.7e-219 764.2 718 58.2
Gohir.D04G058400 Gossypium hirsutum HOM05D003450 ORTHO05D004150 1.3e-218 763.8 557 73.2
Os12g0538900 Oryza sativa ssp. japonica HOM05D003450 ORTHO05D004150 2.7e-216 756.1 718 56.4
CSS0005577 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 5.2e-212 741.9 719 61.5
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 7.5e-211 738.0 552 72.1
CSS0048429 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 4.1e-209 732.3 668 63.3
HPP92_017150 Vanilla planifolia HOM05D003450 ORTHO05D004150 1.4e-204 717.2 726 56.1
PSO210G4892 Papaver somniferum HOM05D003450 ORTHO05D004150 9.8e-203 711.1 721 55.6
HPP92_017154 Vanilla planifolia HOM05D003450 ORTHO05D004150 3.5e-200 702.6 722 55.4
CSS0024266 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 6.6e-199 698.4 724 59.7
PSO210G3071 Papaver somniferum HOM05D003450 ORTHO05D004150 4.3e-198 695.7 721 54.9
Hund02491 Selenicereus undatus HOM05D003450 ORTHO05D004150 2.7e-192 676.4 655 57.4
Zm00001eb410430 Zea mays HOM05D003450 ORTHO05D004150 1.5e-187 660.6 716 51.8
Actinidia14585 Actinidia chinensis HOM05D003450 ORTHO05D004150 1.3e-178 630.9 462 73.8
CDE09G0700 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 1.6e-176 624.0 555 59.6
CDE02G4242 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 3.5e-176 622.9 760 48.4
Mapoly0097s0078 Marchantia polymorpha HOM05D003450 ORTHO05D004150 3.9e-167 592.8 741 47.0
Pp3c3_27420 Physcomitrium patens HOM05D003450 ORTHO05D004150 1.2e-163 581.3 729 46.5
AagrBONN_evm.TU.Sc2ySwM_344.991 Anthoceros agrestis HOM05D003450 ORTHO05D004150 4.4e-163 579.3 730 46.8
Gohir.A05G354700 Gossypium hirsutum HOM05D003450 ORTHO05D004150 5.4e-161 572.4 443 67.7
SMO367G1196 Selaginella moellendorffii HOM05D003450 ORTHO05D004150 4.0e-156 556.2 730 46.2
COL.COLO4_29171 Corchorus olitorius HOM05D003450 ORTHO05D004150 1.7e-154 550.8 718 49.3
Hma1.2p1_1136F.1_g260480 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 1.3e-122 444.9 349 68.2
Actinidia28359 Actinidia chinensis HOM05D003450 ORTHO05D004150 1.9e-121 441.0 488 55.3
CSS0021042 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.0e-114 418.7 362 63.8
Zm00001eb137680 Zea mays HOM05D003450 ORTHO05D004150 2.3e-111 407.5 440 49.1
Solyc02g084490.1 Solanum lycopersicum HOM05D003450 ORTHO05D004150 4.4e-102 376.7 421 50.6
CAN.G1274.36 Capsicum annuum HOM05D003450 ORTHO05D004150 3.4e-94 350.5 443 50.1
PGSC0003DMG400012328 Solanum tuberosum HOM05D003450 ORTHO05D004150 1.7e-93 348.2 279 66.7
Oeu059564.1 Olea europaea HOM05D003450 ORTHO05D004150 3.7e-93 347.1 280 65.0
C02p55220 Brassica napus HOM05D003450 ORTHO05D004150 2.0e-86 324.7 416 49.5
CBR_g57070 Chara braunii HOM05D003450 ORTHO05D004150 2.9e-82 310.8 814 31.8
Solyc02g075610.4 Solanum lycopersicum HOM05D003450 ORTHO05D004150 6.6e-82 309.7 286 60.5
MCO05G130 Micromonas commoda HOM05D003450 ORTHO05D004150 3.6e-80 303.9 785 32.6
Dinv38912 Davidia involucrata HOM05D003450 ORTHO05D004150 1.2e-75 288.9 209 76.6
Gohir.A05G354750 Gossypium hirsutum HOM05D003450 ORTHO05D004150 8.6e-74 282.7 204 76.0
BolC2t11570H Brassica oleracea HOM05D003450 ORTHO05D004150 1.2e-72 278.9 435 44.6
CSS0043437 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.3e-69 268.9 239 61.9
CSS0016783 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.4e-68 265.4 223 62.8
Gohir.D07G231100 Gossypium hirsutum HOM05D003450 ORTHO05D004150 1.9e-68 265.0 213 64.3
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 1.6e-64 251.9 164 80.5
RcHm_v2.0_Chr2g0173251 Rosa chinensis HOM05D003450 ORTHO05D004150 1.8e-63 248.4 308 48.1
MBI14_g35409_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 3.2e-60 237.7 257 52.9
CAN.G293.1 Capsicum annuum HOM05D003450 ORTHO05D004150 2.1e-59 235.0 206 59.7
PRCOL_00005576 Prasinoderma coloniale HOM05D003450 ORTHO05D004150 7.8e-59 233.0 661 31.2
BcaC03g17544 Brassica carinata HOM05D003450 ORTHO05D004150 8.1e-56 223.0 639 31.6
MBI14_g31103_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 1.1e-49 202.6 267 47.9
SEGI_37208 Sequoiadendron giganteum HOM05D003450 ORTHO05D004150 1.7e-42 178.7 169 61.5
Zm00001eb137620 Zea mays HOM05D003450 ORTHO05D004150 2.1e-40 171.8 161 58.4
arahy.Tifrunner.gnm1.ann1.ST064T Arachis hypogaea HOM05D003450 ORTHO05D004150 4.5e-38 164.1 235 48.5
Cre06.g271950 Chlamydomonas reinhardtii HOM05D003450 ORTHO05D004150 1.4e-36 159.1 238 40.3
Cfa023435 Carpinus fangiana HOM05D003450 ORTHO05D125710 9.0e-31 139.8 239 38.9
Prupe.3G293500 Prunus persica HOM05D003450 ORTHO05D004150 5.1e-26 124.0 86 75.6
CSS0015164 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.7e-24 117.9 122 56.6
Gohir.D04G058450 Gossypium hirsutum HOM05D003450 ORTHO05D004150 1.4e-23 115.9 117 57.3
arahy.Tifrunner.gnm1.ann1.CAW9WT Arachis hypogaea HOM05D003450 ORTHO05D026894 5.5e-20 104.0 90 65.6
arahy.Tifrunner.gnm1.ann1.F4W2B8 Arachis hypogaea HOM05D003450 ORTHO05D004150 7.1e-20 103.6 91 64.8
TPR.G33285 Trifolium pratense HOM05D003450 ORTHO05D004150 1.6e-19 102.4 62 82.3
Hma1.2p1_0035F.1_g022380 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 3.9e-18 97.8 86 62.8
Zm00001eb128800 Zea mays HOM05D003450 ORTHO05D004150 6.7e-18 97.1 82 58.5
EL10Ac5g11312 Beta vulgaris HOM05D003450 ORTHO05D004150 4.8e-16 90.9 63 77.8
arahy.Tifrunner.gnm1.ann1.84ZZZT Arachis hypogaea HOM05D003450 ORTHO05D026894 3.4e-14 84.7 76 63.2
Hund02493 Selenicereus undatus HOM05D003450 ORTHO05D004150 4.5e-14 84.3 62 71.0
CiPaw.03G045400 Carya illinoinensis HOM05D003450 ORTHO05D004150 1.3e-13 82.8 90 55.6
Atru.chr6.2427 Acer truncatum HOM05D003450 ORTHO05D004150 2.7e-11 75.1 93 51.6
CDE09G0158 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 1.5e-09 69.3 109 44.0
CSS0043641 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D110033 2.5e-09 68.6 92 45.7
CSS0014830 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D112628 5.7e-09 67.4 92 44.6
Sopen02g029170 Solanum pennellii HOM05D003450 ORTHO05D004150 3.7e-08 64.7 112 42.0
Aqoxy2G03587 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 2.0e-06 58.9 91 46.2
BolC2t11571H Brassica oleracea HOM05D003450 ORTHO05D004150 4.5e-06 57.8 117 33.3
Gohir.A11G236220 Gossypium hirsutum HOM05D003450 ORTHO05D217491 4.5e-06 57.8 62 54.8
Lsat_1_v5_gn_9_20240 Lactuca sativa HOM05D000349 ORTHO05D013656 4.5e-06 57.8 50 66.0
arahy.Tifrunner.gnm1.ann1.D2JCSM Arachis hypogaea HOM05D003450 ORTHO05D026894 5.9e-06 57.4 58 56.9
FvH4_1g06690 Fragaria vesca HOM05D003450 ORTHO05D004150 5.9e-06 57.4 41 70.7


User provided reference genes

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