Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 1.1e-133 479.9 230 100.0
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 2.0e-100 369.4 219 78.5
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 2.6e-100 369.0 211 79.1
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 2.6e-100 369.0 211 79.1
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 1.2e-97 360.1 207 78.3
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 3.6e-97 358.6 227 74.0
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 6.1e-97 357.8 216 78.7
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 7.9e-97 357.5 220 75.0
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 1.5e-95 353.2 220 75.5
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 2.6e-95 352.4 234 73.1
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 5.7e-95 351.3 214 75.2
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 5.7e-95 351.3 222 73.9
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 7.4e-95 350.9 214 75.7
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 7.4e-95 350.9 213 76.5
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 1.7e-94 349.7 215 74.4
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 2.2e-94 349.4 215 73.5
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 3.7e-94 348.6 213 76.5
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 6.3e-94 347.8 209 77.5
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 8.2e-94 347.4 226 72.1
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 2.4e-93 345.9 223 71.3
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 2.4e-93 345.9 213 74.2
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 4.1e-93 345.1 225 72.0
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 7.0e-93 344.4 219 74.4
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 1.5e-92 343.2 219 71.7
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 2.0e-92 342.8 217 74.2
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 2.6e-92 342.4 213 73.2
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 5.9e-92 341.3 213 72.8
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 7.7e-92 340.9 216 72.2
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 8.5e-91 337.4 223 67.7
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 1.9e-90 336.3 208 72.1
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 2.5e-90 335.9 225 69.8
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 9.4e-90 334.0 220 72.7
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 1.2e-89 333.6 219 69.9
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 2.1e-89 332.8 225 68.0
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 2.7e-89 332.4 213 72.3
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 3.6e-89 332.0 221 69.2
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 4.7e-89 331.6 216 69.0
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 4.7e-89 331.6 220 70.0
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 6.1e-89 331.3 216 68.5
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 6.1e-89 331.3 215 69.3
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 8.0e-89 330.9 204 72.5
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 1.4e-88 330.1 206 71.4
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 1.8e-88 329.7 221 69.7
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 1.8e-88 329.7 214 71.0
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 2.3e-88 329.3 219 69.9
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 5.2e-88 328.2 214 70.6
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 1.1e-87 327.0 216 70.4
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 2.0e-87 326.2 218 67.9
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 2.0e-87 326.2 204 73.5
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 4.4e-87 325.1 210 71.4
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 7.4e-87 324.3 218 69.7
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 7.4e-87 324.3 218 71.1
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 7.4e-87 324.3 218 68.8
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 2.2e-86 322.8 211 70.1
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 8.2e-86 320.9 208 73.1
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 3.1e-85 318.9 219 67.6
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 4.1e-85 318.5 225 65.8
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 4.1e-85 318.5 207 71.0
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 7.0e-85 317.8 199 70.9
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 1.6e-84 316.6 202 70.8
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 3.5e-84 315.5 202 70.3
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 3.5e-84 315.5 254 60.2
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 2.2e-83 312.8 219 68.5
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 8.5e-83 310.8 205 69.8
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 1.5e-82 310.1 208 66.8
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 2.5e-82 309.3 208 66.8
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 4.2e-82 308.5 208 66.8
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 5.5e-82 308.1 216 65.7
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 5.5e-82 308.1 215 69.3
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 1.6e-81 306.6 207 65.2
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 2.1e-81 306.2 212 67.9
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 4.0e-80 302.0 210 65.2
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 5.2e-80 301.6 198 69.2
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 8.8e-80 300.8 164 81.7
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 9.7e-79 297.4 231 59.7
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 1.3e-78 297.0 198 69.2
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 5.3e-77 291.6 232 61.2
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 3.8e-75 285.4 175 73.1
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 8.5e-75 284.3 173 72.3
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 9.4e-74 280.8 179 72.6
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 3.6e-73 278.9 218 62.8
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 6.8e-72 274.6 168 73.8
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 3.4e-71 272.3 181 70.2
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 7.5e-71 271.2 181 69.6
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 3.8e-67 258.8 174 67.2
FvH4_6g00710 Fragaria vesca HOM05D006824 ORTHO05D008779 1.1e-66 257.3 149 81.2
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 2.1e-65 253.1 204 60.3
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 4.7e-65 251.9 194 57.7
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 1.0e-64 250.8 193 57.0
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 2.3e-64 249.6 170 67.6
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 3.0e-64 249.2 197 56.3
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 3.4e-63 245.7 203 56.2
Gohir.D03G049300 Gossypium hirsutum HOM05D006824 ORTHO05D008779 4.4e-63 245.4 160 70.6
Hma1.2p1_0171F.1_g075760 Hydrangea macrophylla HOM05D006824 ORTHO05D008779 4.4e-63 245.4 134 82.1
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 1.1e-61 240.7 168 65.5
Zm00001eb169290 Zea mays HOM05D006824 ORTHO05D008779 2.0e-55 219.9 146 66.4
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 8.6e-51 204.5 121 76.9
Nitab4.5_0008294g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 3.3e-50 202.6 223 48.9
MD04G1242100 Malus domestica HOM05D006824 ORTHO05D008779 6.2e-49 198.4 129 71.3
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 1.4e-48 197.2 200 49.0
arahy.Tifrunner.gnm1.ann1.EIZA4A Arachis hypogaea HOM05D006824 ORTHO05D008779 1.5e-42 177.2 102 75.5
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 2.5e-42 176.4 225 40.9
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 6.4e-38 161.8 182 42.3
arahy.Tifrunner.gnm1.ann1.JEI8NT Arachis hypogaea HOM05D006824 ORTHO05D008779 1.9e-37 160.2 144 54.2
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 1.3e-35 154.1 91 76.9
FAN09G4644 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.8e-32 143.7 80 80.0
CARHR074720 Cardamine hirsuta HOM05D006824 ORTHO05D008779 6.2e-25 118.6 88 62.5
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 5.8e-23 112.1 72 70.8
Psat3g104160 Pisum sativum HOM05D006824 ORTHO05D008779 8.7e-19 98.2 60 73.3
SEGI_14412 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 5.6e-18 95.5 54 75.9
ATR0824G111 Amborella trichopoda HOM05D006824 ORTHO05D008779 6.2e-17 92.0 75 62.7
arahy.Tifrunner.gnm1.ann1.X7EDXL Arachis hypogaea HOM05D006824 ORTHO05D021501 2.4e-16 90.1 54 74.1
ATR0263G001 Amborella trichopoda HOM05D006824 ORTHO05D008779 1.3e-14 84.3 79 50.6
FAN09G1422 Fragaria x ananassa HOM05D001170 ORTHO05D002759 4.6e-12 75.9 54 59.3
arahy.Tifrunner.gnm1.ann1.0X0W56 Arachis hypogaea HOM05D006824 ORTHO05D021501 3.0e-11 73.2 91 45.1
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 3.0e-11 73.2 91 45.1
arahy.Tifrunner.gnm1.ann1.96LZZJ Arachis hypogaea HOM05D006824 ORTHO05D021501 3.0e-11 73.2 91 45.1
arahy.Tifrunner.gnm1.ann1.DM3ST4 Arachis hypogaea HOM05D006824 ORTHO05D021501 3.0e-11 73.2 91 45.1
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 8.7e-11 71.6 90 44.4
SEGI_33071 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 3.3e-10 69.7 76 46.1
Cpa.g.sc32.161 Carica papaya HOM05D006824 ORTHO05D008779 2.2e-06 57.0 32 68.8
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 3.8e-06 56.2 91 35.2
arahy.Tifrunner.gnm1.ann1.LK4K8I Arachis hypogaea HOM05D006688 ORTHO05D008550 8.4e-06 55.1 34 67.6


User provided reference genes

Program Settings