Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 7.5e-233 810.1 385 100.0
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.2e-219 766.1 384 95.8
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 2.2e-192 675.6 384 83.3
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 7.3e-188 660.6 384 81.0
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 9.6e-188 660.2 384 79.4
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.6e-187 658.3 384 80.7
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.6e-187 658.3 384 80.7
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.8e-186 656.0 384 80.2
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 2.4e-186 655.6 384 78.9
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 9.9e-185 650.2 375 81.9
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 1.3e-184 649.8 384 79.4
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 2.7e-182 642.1 378 80.4
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 7.9e-182 640.6 384 78.1
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 1.8e-181 639.4 385 77.7
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 2.3e-181 639.0 384 79.2
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 5.1e-181 637.9 384 78.4
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 6.7e-181 637.5 384 78.9
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 6.7e-181 637.5 386 77.2
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.9e-180 636.0 383 78.1
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 3.3e-180 635.2 384 77.9
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 4.3e-180 634.8 391 77.2
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 7.4e-180 634.0 384 77.6
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 7.4e-180 634.0 385 77.1
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.6e-179 632.9 384 77.3
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 2.1e-179 632.5 387 76.0
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 2.1e-179 632.5 384 77.9
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 4.8e-179 631.3 384 77.6
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 6.2e-179 630.9 387 77.0
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 2.4e-178 629.0 384 76.0
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 2.4e-178 629.0 384 78.1
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 2.4e-178 629.0 380 77.6
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 4.0e-178 628.2 387 76.5
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 1.2e-177 626.7 384 77.1
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 2.0e-177 625.9 384 76.6
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.6e-177 625.5 384 77.9
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 5.5e-175 617.8 385 76.6
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 9.3e-175 617.1 384 76.8
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 9.3e-175 617.1 379 77.0
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.2e-174 616.7 374 77.8
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 4.6e-174 614.8 385 74.8
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 1.3e-173 613.2 388 74.5
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 1.5e-172 609.8 384 74.2
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 5.6e-172 607.8 387 74.7
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 2.8e-171 605.5 384 74.5
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 8.1e-171 604.0 380 75.5
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.1e-170 603.6 384 73.2
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 1.4e-170 603.2 378 75.4
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 4.0e-170 601.7 409 69.9
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 1.5e-169 599.7 381 73.2
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 2.0e-169 599.4 340 80.6
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.6e-169 599.0 378 75.4
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 7.6e-169 597.4 384 75.0
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 7.6e-169 597.4 340 80.6
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 1.3e-168 596.7 372 76.1
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 1.3e-168 596.7 353 78.8
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 1.3e-168 596.7 377 74.5
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.2e-168 595.9 373 75.3
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 2.9e-168 595.5 340 80.6
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.1e-167 593.6 374 75.4
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 2.5e-167 592.4 384 71.9
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.5e-167 591.3 379 74.9
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 7.1e-167 590.9 357 77.9
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 1.6e-166 589.7 386 73.6
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 2.1e-166 589.3 385 71.9
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 2.1e-166 589.3 356 77.0
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.7e-166 589.0 385 71.9
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 6.0e-166 587.8 353 78.8
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.0e-165 585.5 374 74.3
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.9e-165 585.1 385 71.4
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 3.9e-165 585.1 384 72.7
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 3.9e-165 585.1 356 77.0
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 6.7e-165 584.3 381 74.3
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.1e-164 583.6 366 74.9
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 8.2e-163 577.4 384 72.1
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 5.3e-162 574.7 384 72.4
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 1.7e-160 569.7 400 68.5
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.7e-160 569.7 378 68.5
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 8.5e-160 567.4 384 72.4
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 3.9e-157 558.5 384 69.3
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 8.7e-157 557.4 320 80.3
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 5.7e-156 554.7 400 68.0
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 7.4e-156 554.3 416 63.9
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 9.1e-154 547.4 394 67.3
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 1.4e-151 540.0 398 64.1
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 1.4e-149 533.5 415 65.1
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 1.8e-149 533.1 372 68.0
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 2.3e-149 532.7 384 64.3
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 2.3e-149 532.7 385 64.7
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 2.3e-149 532.7 384 64.8
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 2.3e-149 532.7 386 67.9
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 3.0e-149 532.3 390 68.2
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 5.1e-149 531.6 385 64.4
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 8.8e-149 530.8 385 64.9
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.5e-148 530.0 384 63.8
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 1.5e-148 530.0 384 63.8
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 1.5e-148 530.0 384 63.8
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 2.6e-148 529.3 384 63.8
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.3e-148 528.9 384 64.1
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 4.4e-148 528.5 399 62.2
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.2e-147 526.2 366 69.1
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.7e-147 525.4 384 68.2
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 4.8e-147 525.0 384 63.0
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 6.3e-147 524.6 384 62.5
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 8.2e-147 524.2 385 63.9
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 3.4e-145 518.8 385 63.4
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.4e-141 506.9 286 83.6
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.5e-140 503.4 387 63.6
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.0e-140 503.1 381 64.6
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 1.4e-138 496.9 354 64.4
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 3.1e-138 495.7 413 62.2
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 3.8e-136 488.8 411 58.2
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.8e-133 479.9 312 70.2
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 3.3e-132 475.7 347 69.2
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 1.3e-128 463.8 357 58.8
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 8.5e-128 461.1 355 58.6
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 2.1e-126 456.4 365 59.5
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 3.0e-125 452.6 355 58.0
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 6.8e-117 424.9 288 71.2
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.7e-107 392.5 321 58.9
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 1.8e-106 390.2 311 61.4
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.2e-105 387.5 321 57.9
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 2.8e-102 376.3 357 54.6
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 1.3e-99 367.5 337 54.9
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 2.7e-97 359.8 202 83.2
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 3.5e-97 359.4 340 50.0
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 7.8e-97 358.2 398 53.8
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 2.8e-94 349.7 216 74.1
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 3.7e-91 339.3 202 78.2
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 5.8e-84 315.5 330 53.0
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.5e-79 300.8 331 45.9
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.1e-77 294.7 175 80.6
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 2.4e-77 293.5 254 60.6
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 9.0e-77 291.6 372 41.9
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 7.1e-58 228.8 194 58.2
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 3.9e-56 223.0 119 81.5
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 2.1e-54 217.2 182 59.9
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 2.6e-52 210.3 132 76.5
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.2e-49 201.4 157 63.1
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 1.6e-41 174.5 234 42.3
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 4.1e-37 159.8 85 82.4
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 7.2e-34 149.1 94 73.4
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 4.7e-33 146.4 195 43.6
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 1.0e-24 118.6 135 51.9
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.1e-23 115.2 186 40.3
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.5e-23 114.8 186 40.3
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 8.2e-22 109.0 129 44.2
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 2.5e-18 97.4 70 65.7
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 3.6e-17 93.6 51 80.4
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 3.0e-16 90.5 80 62.5
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 8.8e-16 89.0 153 39.9
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.5e-10 69.7 33 90.9
Ah.02g112160 Amaranthus hybridus HOM05D015883 ORTHO05D005553 9.8e-07 58.9 42 71.4


User provided reference genes

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