Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 1.9e-231 805.4 404 100.0
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 8.5e-203 710.3 394 89.6
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 3.9e-200 701.4 394 88.8
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 3.3e-199 698.4 387 90.4
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 7.4e-199 697.2 397 85.9
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 1.3e-198 696.4 396 86.6
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 1.1e-197 693.3 397 87.2
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 9.1e-197 690.3 395 86.3
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 9.1e-197 690.3 397 85.4
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 2.0e-196 689.1 379 89.7
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 2.6e-196 688.7 394 86.3
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 1.0e-195 686.8 404 84.2
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 1.7e-195 686.0 390 86.7
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 1.7e-195 686.0 391 86.2
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 3.8e-195 684.9 396 85.9
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 3.8e-195 684.9 404 84.2
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 3.8e-195 684.9 396 84.8
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 6.5e-195 684.1 395 85.6
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 1.4e-194 682.9 397 85.1
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 9.4e-194 680.2 394 84.8
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 1.2e-193 679.9 394 84.5
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 2.7e-193 678.7 397 84.6
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 2.7e-193 678.7 397 84.1
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 4.7e-193 677.9 397 84.1
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 4.7e-193 677.9 395 84.8
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 7.9e-193 677.2 393 85.0
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 1.8e-192 676.0 394 85.0
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 3.0e-192 675.2 390 86.4
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 3.0e-192 675.2 394 85.5
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 3.9e-192 674.9 394 85.3
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 5.2e-192 674.5 394 85.5
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 5.2e-192 674.5 397 83.9
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 8.8e-192 673.7 394 84.3
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 8.8e-192 673.7 394 83.5
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 1.1e-191 673.3 403 83.6
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 1.1e-191 673.3 385 86.0
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 3.3e-191 671.8 395 83.0
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 4.4e-191 671.4 395 82.3
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 4.4e-191 671.4 397 83.9
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 7.4e-191 670.6 392 84.9
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.3e-190 669.8 395 82.5
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 1.3e-190 669.8 391 84.4
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 2.2e-190 669.1 400 83.5
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 2.8e-190 668.7 395 82.3
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 1.8e-189 666.0 394 82.2
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 1.8e-189 666.0 389 83.5
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 3.1e-189 665.2 452 75.2
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 3.1e-189 665.2 387 82.7
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 4.1e-189 664.8 389 83.5
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 5.3e-189 664.5 397 82.9
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 5.3e-189 664.5 391 83.4
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 7.0e-189 664.1 392 82.9
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 7.0e-189 664.1 385 85.2
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 7.0e-189 664.1 394 81.7
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 7.0e-189 664.1 391 85.9
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 9.1e-189 663.7 396 82.6
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.2e-188 663.3 394 81.5
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 1.6e-188 662.9 396 82.8
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.0e-188 662.5 389 83.0
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 2.6e-188 662.1 394 81.5
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 2.6e-188 662.1 389 83.3
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 3.5e-188 661.8 396 82.6
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.5e-188 661.8 394 81.2
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 5.9e-188 661.0 397 81.6
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 7.7e-188 660.6 396 81.8
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 1.0e-187 660.2 396 82.6
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.0e-187 660.2 396 82.3
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 1.7e-187 659.4 395 83.0
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 2.9e-187 658.7 395 82.0
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 5.0e-187 657.9 390 83.1
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 5.0e-187 657.9 396 82.1
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.5e-187 657.1 396 82.1
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 1.5e-186 656.4 400 79.2
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 1.9e-186 656.0 391 81.8
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 1.9e-186 656.0 398 81.4
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 5.5e-186 654.4 386 81.9
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 9.4e-186 653.7 396 81.6
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 9.4e-186 653.7 391 81.8
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.2e-185 653.3 396 81.6
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.6e-185 652.9 396 81.6
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.6e-185 652.9 394 80.5
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 1.6e-185 652.9 396 82.3
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 3.6e-185 651.7 386 82.6
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.6e-185 651.7 397 81.1
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 4.7e-185 651.4 389 81.7
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 4.7e-185 651.4 397 81.1
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 8.0e-185 650.6 396 81.6
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 3.0e-184 648.7 389 80.7
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 4.0e-184 648.3 387 82.4
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 5.2e-184 647.9 387 82.7
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 6.7e-184 647.5 396 80.3
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 8.8e-184 647.1 387 82.2
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 1.5e-183 646.4 396 80.1
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 4.4e-183 644.8 380 83.2
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 5.7e-183 644.4 382 83.0
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 7.5e-183 644.0 393 80.7
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 7.5e-183 644.0 395 80.5
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 1.7e-182 642.9 388 80.7
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 2.4e-181 639.0 394 80.2
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 2.0e-180 636.0 381 81.9
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 3.6e-177 625.2 401 77.8
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.3e-174 616.7 393 75.3
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 2.8e-174 615.5 356 83.7
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 1.2e-172 610.1 394 75.4
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 2.3e-171 605.9 394 74.1
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.9e-162 576.2 394 74.4
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 4.9e-158 561.6 357 75.1
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 3.1e-152 542.3 394 68.5
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 7.8e-148 527.7 395 68.6
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 1.7e-147 526.6 395 68.9
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 8.6e-147 524.2 296 85.1
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 1.9e-146 523.1 386 64.8
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 8.3e-142 507.7 371 67.4
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 5.4e-141 505.0 345 75.7
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 8.6e-139 497.7 396 66.9
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 4.7e-137 491.9 385 62.6
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 4.4e-135 485.3 350 65.7
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.2e-132 477.2 317 76.7
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 3.9e-131 472.2 361 63.7
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 1.6e-129 466.8 359 64.3
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 3.2e-125 452.6 276 80.1
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 1.2e-124 450.7 259 84.9
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 2.3e-123 446.4 289 74.0
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 3.9e-123 445.7 397 61.5
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 4.2e-117 425.6 310 70.6
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 9.6e-114 414.5 288 72.6
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 2.2e-110 403.3 265 77.0
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 6.4e-110 401.7 258 77.5
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 5.1e-99 365.5 251 75.7
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 6.7e-99 365.2 251 73.3
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 3.7e-97 359.4 211 86.7
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 5.5e-93 345.5 355 49.3
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 7.9e-92 341.7 331 50.5
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 1.9e-90 337.0 218 78.4
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 3.1e-88 329.7 226 76.1
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 2.2e-86 323.6 195 76.9
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 9.4e-77 291.6 211 69.7
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.9e-75 286.2 174 82.8
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 2.2e-65 253.8 174 71.3
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 6.5e-62 242.3 174 69.5
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 9.4e-61 238.4 124 87.9
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 2.1e-60 237.3 340 40.9
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 3.4e-58 229.9 136 86.0
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 1.2e-55 221.5 291 42.6
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 1.2e-50 204.9 137 75.9
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 8.3e-41 172.2 115 80.0
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 2.7e-39 167.2 102 77.5
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 7.3e-37 159.1 100 84.0
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 2.6e-34 150.6 85 82.4
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 8.3e-33 145.6 112 69.6
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 7.8e-31 139.0 77 92.2
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 6.0e-23 112.8 117 56.4
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 1.3e-22 111.7 97 61.9
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 3.9e-22 110.2 86 66.3
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 2.0e-18 97.8 60 90.0
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 2.9e-17 94.0 68 69.1
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 4.9e-17 93.2 60 86.7
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.4e-16 91.7 58 63.8
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 6.6e-14 82.8 50 76.0
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 5.3e-11 73.2 44 77.3
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 1.7e-06 58.2 220 25.5


User provided reference genes

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