Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 1.4e-78 296.2 146 100.0
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 6.0e-50 201.1 132 81.1
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 7.4e-48 194.1 129 79.1
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 1.3e-47 193.4 129 77.5
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 1.6e-47 193.0 129 78.3
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 2.1e-47 192.6 129 78.3
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 2.8e-47 192.2 129 76.7
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 5.3e-46 188.0 126 77.0
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 5.3e-46 188.0 126 77.8
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 3.4e-45 185.3 129 77.5
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 7.6e-45 184.1 136 70.6
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 7.6e-45 184.1 128 74.2
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 1.3e-44 183.3 126 73.0
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 1.3e-44 183.3 130 74.6
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 1.3e-44 183.3 129 74.4
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 1.7e-44 183.0 138 72.5
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 6.5e-44 181.0 129 72.1
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 6.5e-44 181.0 132 76.5
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 6.5e-44 181.0 132 76.5
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 3.2e-43 178.7 139 66.2
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 5.5e-43 177.9 133 72.9
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 7.1e-43 177.6 126 73.0
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 9.3e-43 177.2 128 77.3
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 1.2e-42 176.8 142 69.7
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 1.2e-42 176.8 127 72.4
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 2.1e-42 176.0 127 74.8
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 3.5e-42 175.3 128 71.1
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 3.5e-42 175.3 128 71.1
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 7.9e-42 174.1 126 71.4
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.3e-41 173.3 129 69.0
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 1.8e-41 172.9 128 72.7
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 2.3e-41 172.6 127 74.0
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 2.3e-41 172.6 127 71.7
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 2.3e-41 172.6 127 71.7
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 3.0e-41 172.2 126 70.6
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 3.9e-41 171.8 129 68.2
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 3.9e-41 171.8 129 68.2
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 3.9e-41 171.8 127 72.4
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 5.1e-41 171.4 129 71.3
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 8.7e-41 170.6 139 64.7
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 2.5e-40 169.1 129 67.4
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 2.5e-40 169.1 126 69.0
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 2.5e-40 169.1 132 72.0
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 2.5e-40 169.1 126 73.0
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 3.3e-40 168.7 127 70.9
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 3.3e-40 168.7 131 69.5
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 5.7e-40 167.9 127 70.1
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 5.7e-40 167.9 127 71.7
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 7.4e-40 167.5 138 65.9
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 7.4e-40 167.5 129 69.0
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 1.3e-39 166.8 126 71.4
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 1.3e-39 166.8 142 64.1
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 1.6e-39 166.4 128 68.8
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 1.6e-39 166.4 128 71.1
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 2.2e-39 166.0 133 69.2
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 3.7e-39 165.2 129 70.5
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 4.8e-39 164.9 133 69.9
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 6.3e-39 164.5 126 69.0
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 1.8e-38 162.9 128 68.0
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 1.8e-38 162.9 139 64.7
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 2.4e-38 162.5 129 67.4
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 2.4e-38 162.5 127 68.5
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 2.4e-38 162.5 126 69.0
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 3.1e-38 162.2 128 70.3
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 9.0e-38 160.6 127 68.5
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 1.2e-37 160.2 129 68.2
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 1.5e-37 159.8 129 68.2
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 2.6e-37 159.1 129 65.9
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 2.6e-37 159.1 128 65.6
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 2.6e-37 159.1 126 68.3
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 1.1e-35 153.7 127 63.8
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 1.1e-35 153.7 126 66.7
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 2.5e-35 152.5 130 64.6
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 2.5e-35 152.5 130 66.9
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 3.2e-35 152.1 126 65.1
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 9.4e-35 150.6 127 66.1
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 1.2e-34 150.2 139 61.2
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 1.6e-34 149.8 126 65.1
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 2.7e-34 149.1 133 64.7
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 4.6e-34 148.3 130 65.4
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 4.6e-34 148.3 129 65.1
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 7.9e-34 147.5 129 62.8
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.8e-33 146.4 129 62.0
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 1.8e-33 146.4 126 63.5
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 1.8e-33 146.4 130 62.3
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 5.1e-33 144.8 130 62.3
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 8.8e-33 144.1 127 59.8
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.1e-32 143.7 129 60.5
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 1.1e-32 143.7 128 62.5
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 1.3e-31 140.2 92 78.3
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 1.3e-31 140.2 127 60.6
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 1.7e-31 139.8 132 62.9
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 2.8e-31 139.0 128 64.8
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 3.7e-31 138.7 127 59.8
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 4.8e-31 138.3 126 65.1
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 6.3e-31 137.9 129 59.7
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 1.1e-30 137.1 130 62.3
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 1.1e-30 137.1 124 60.5
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 2.4e-30 136.0 128 61.7
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 2.4e-30 136.0 128 61.7
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 3.1e-30 135.6 133 61.7
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 6.9e-30 134.4 143 51.7
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 2.0e-29 132.9 130 61.5
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 2.0e-29 132.9 126 60.3
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 4.5e-29 131.7 123 56.9
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 1.0e-28 130.6 126 57.1
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 1.0e-28 130.6 111 69.4
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 1.3e-28 130.2 126 57.9
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 3.8e-28 128.6 130 58.5
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 2.5e-27 125.9 125 60.0
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 2.5e-27 125.9 127 54.3
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 3.2e-27 125.6 130 57.7
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 1.6e-26 123.2 137 54.0
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 3.0e-25 119.0 124 55.6
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 3.3e-24 115.5 111 55.0
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 7.4e-24 114.4 125 51.2
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 3.7e-23 112.1 90 65.6
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 1.4e-22 110.2 72 73.6
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 1.8e-22 109.8 88 67.0
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 2.6e-21 105.9 98 64.3
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 6.5e-20 101.3 130 46.9
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 5.5e-19 98.2 129 45.7
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 2.7e-18 95.9 114 50.9
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 2.2e-15 86.3 138 46.4
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 4.8e-15 85.1 106 52.8
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 8.2e-15 84.3 104 53.8
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 6.1e-10 68.2 54 57.4
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 6.1e-10 68.2 90 45.6
Zm00001eb019850 Zea mays HOM05D005924 ORTHO05D007290 7.5e-08 61.2 121 37.2
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 2.8e-07 59.3 44 61.4
PSO210G6050 Papaver somniferum HOM05D000045 ORTHO05D000067 6.3e-07 58.2 88 51.1


User provided reference genes

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