Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 9.8e-161 570.1 290 100.0
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 3.2e-111 405.6 274 75.5
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 6.9e-106 387.9 273 69.6
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 2.0e-105 386.3 277 71.1
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 2.6e-105 386.0 287 68.3
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 5.9e-105 384.8 274 70.4
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.7e-104 383.3 280 67.1
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 5.0e-104 381.7 273 68.5
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 5.0e-104 381.7 273 69.6
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 4.2e-103 378.6 273 70.3
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.2e-102 377.1 279 68.8
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.6e-102 376.7 284 68.0
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.6e-102 376.7 274 69.3
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 5.1e-101 371.7 274 67.9
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 6.7e-101 371.3 282 67.4
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 8.7e-101 370.9 274 66.8
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 7.4e-100 367.9 282 66.3
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 1.6e-99 366.7 273 68.9
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 2.2e-99 366.3 286 63.6
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.8e-99 365.9 274 68.6
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 2.8e-99 365.9 288 64.2
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.4e-98 363.6 285 66.0
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 2.4e-98 362.8 274 68.2
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 4.1e-98 362.1 278 65.5
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 1.2e-97 360.5 273 66.7
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 1.2e-97 360.5 277 63.2
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 2.0e-97 359.8 277 66.4
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 3.4e-97 359.0 280 65.0
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.5e-97 358.6 281 65.1
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 5.0e-96 355.1 287 62.7
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 5.0e-96 355.1 276 66.7
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.4e-95 353.6 281 64.8
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 1.9e-95 353.2 344 54.7
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 4.2e-95 352.1 278 64.7
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 4.2e-95 352.1 278 64.4
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 5.5e-95 351.7 280 64.6
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 7.2e-95 351.3 285 61.8
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.2e-94 350.5 277 64.3
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.9e-94 347.8 281 63.7
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 1.4e-93 347.1 285 63.5
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 5.1e-93 345.1 278 62.2
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.7e-93 344.7 286 61.5
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.1e-92 344.0 287 60.6
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.1e-92 344.0 278 63.3
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 1.1e-92 344.0 288 57.6
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 1.5e-92 343.6 287 62.0
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 2.6e-92 342.8 273 61.5
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.3e-92 342.4 282 62.4
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 5.7e-92 341.7 287 59.6
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 5.7e-92 341.7 290 59.3
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 9.7e-92 340.9 261 65.5
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 9.7e-92 340.9 313 57.8
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 1.3e-91 340.5 289 59.5
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.7e-91 340.1 272 62.5
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 4.8e-91 338.6 285 62.5
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 4.8e-91 338.6 279 64.5
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 1.1e-90 337.4 286 59.1
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.8e-90 336.7 303 58.4
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.4e-90 336.3 277 62.8
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 3.1e-90 335.9 274 63.1
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 4.1e-90 335.5 283 62.5
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 5.3e-90 335.1 271 62.7
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 6.9e-90 334.7 277 62.8
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 4.5e-89 332.0 272 62.5
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 5.9e-89 331.6 275 63.6
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 5.9e-89 331.6 275 62.5
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 5.9e-89 331.6 283 60.1
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 1.0e-88 330.9 274 62.0
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 1.0e-88 330.9 287 62.4
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 2.9e-88 329.3 274 59.1
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.1e-87 327.4 285 60.0
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.5e-87 326.2 287 57.5
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 4.2e-87 325.5 286 60.1
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 2.1e-86 323.2 285 59.3
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 4.7e-86 322.0 273 60.4
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 3.9e-85 318.9 285 57.5
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 3.9e-85 318.9 272 61.8
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 3.3e-84 315.8 281 56.9
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 3.3e-84 315.8 273 61.9
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.3e-83 313.9 267 58.8
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.3e-83 313.9 277 56.0
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 1.7e-83 313.5 294 56.5
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 3.7e-83 312.4 273 59.7
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 3.7e-83 312.4 299 57.2
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 6.3e-83 311.6 281 55.9
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.8e-82 310.1 267 58.1
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 2.0e-81 306.6 276 58.7
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 4.5e-81 305.4 285 56.1
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 1.7e-80 303.5 276 56.5
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 3.8e-80 302.4 278 57.6
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 1.5e-79 300.4 273 56.0
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 4.2e-79 298.9 272 58.5
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 5.5e-79 298.5 280 55.7
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 5.5e-79 298.5 272 58.5
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 7.2e-79 298.1 287 56.8
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 9.4e-79 297.7 297 54.9
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 9.4e-79 297.7 297 54.9
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 9.4e-79 297.7 297 54.9
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 3.6e-78 295.8 288 53.8
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.4e-77 293.9 292 52.7
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 4.0e-77 292.4 291 52.9
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 6.7e-77 291.6 286 54.9
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 2.0e-76 290.0 245 60.4
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 4.4e-76 288.9 283 54.8
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 5.7e-76 288.5 192 78.1
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 1.3e-75 287.3 296 53.4
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 3.7e-75 285.8 290 52.1
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 4.8e-75 285.4 319 49.8
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 6.3e-75 285.0 281 52.0
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 8.2e-75 284.6 296 53.0
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 8.2e-75 284.6 296 53.0
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.1e-74 284.3 288 54.5
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 2.4e-74 283.1 277 51.6
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 5.3e-74 282.0 281 51.2
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 7.0e-74 281.6 294 53.1
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 9.1e-74 281.2 273 55.7
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.2e-73 280.8 281 50.9
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 2.7e-73 279.6 292 51.7
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 2.7e-73 279.6 285 54.0
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 4.5e-73 278.9 290 52.1
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 2.2e-72 276.6 212 64.6
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 3.8e-72 275.8 295 52.2
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 5.0e-72 275.4 295 52.2
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 6.5e-72 275.0 268 54.1
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 9.4e-71 271.2 277 53.1
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 1.2e-70 270.8 272 52.9
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 2.1e-70 270.0 195 67.7
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 2.7e-70 269.6 273 50.2
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 6.1e-70 268.5 264 55.3
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 1.2e-68 264.2 283 53.0
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 3.4e-68 262.7 324 47.5
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 1.3e-67 260.8 238 59.7
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 4.8e-67 258.8 183 71.0
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 1.0e-64 251.1 291 48.8
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.7e-64 250.4 266 51.5
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 2.8e-62 243.0 259 54.8
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.3e-56 224.2 272 46.3
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 2.5e-55 219.9 174 62.1
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 4.7e-54 215.7 160 67.5
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 1.0e-53 214.5 230 50.4
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 6.8e-53 211.8 232 50.4
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 3.4e-52 209.5 160 62.5
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 3.4e-52 209.5 227 49.8
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 1.3e-51 207.6 270 45.9
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 3.0e-48 196.4 237 44.3
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.5e-47 194.1 301 40.9
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 1.2e-46 191.0 158 62.7
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.5e-41 172.9 153 58.8
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.5e-41 172.9 153 59.5
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.0e-40 169.9 153 59.5
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 5.0e-40 169.1 143 55.9
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.5e-39 164.9 153 58.2
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.6e-36 156.8 119 62.2
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 2.2e-35 153.7 129 55.8
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 2.5e-31 140.2 143 53.8
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 3.6e-30 136.3 132 59.8
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 6.2e-30 135.6 148 54.1
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 5.2e-29 132.5 125 52.8
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 6.8e-29 132.1 154 50.0
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 2.7e-25 120.2 98 58.2
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.8e-25 118.6 129 50.4
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.3e-23 113.2 104 56.7
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 7.3e-23 112.1 99 53.5
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 1.1e-21 108.2 224 33.9
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.7e-16 90.9 90 47.8
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.3e-14 84.7 138 39.9
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.4e-12 76.6 152 33.6
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 3.4e-12 76.6 51 68.6
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 4.5e-12 76.3 243 28.0
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 2.4e-10 70.5 60 61.7
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 6.2e-06 55.8 35 68.6


User provided reference genes

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