Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 3.1e-306 1054.3 525 100.0
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 3.0e-216 755.4 503 74.8
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.8e-206 721.5 499 72.1
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.4e-205 719.9 499 71.9
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 2.9e-203 712.2 500 68.6
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 4.2e-202 708.4 499 68.9
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 1.6e-201 706.4 495 70.7
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.1e-201 706.1 501 69.7
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.1e-201 706.1 501 69.7
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.8e-200 703.0 503 69.4
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.8e-200 703.0 503 69.4
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 3.3e-199 698.7 500 68.2
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 2.1e-198 696.0 503 67.8
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 3.1e-197 692.2 502 67.7
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 3.1e-197 692.2 459 72.5
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.2e-196 690.3 505 66.9
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.5e-196 689.9 473 71.7
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 2.0e-196 689.5 505 66.3
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.0e-196 689.5 493 67.5
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 3.4e-196 688.7 505 66.5
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 3.4e-196 688.7 457 70.5
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 7.6e-196 687.6 527 65.8
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.0e-195 687.2 494 67.4
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.3e-195 686.8 502 66.5
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.3e-195 686.8 502 66.5
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.8e-195 685.3 494 69.2
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.9e-194 682.9 473 71.0
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.5e-194 682.6 459 71.2
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 4.2e-194 681.8 497 67.4
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 2.7e-193 679.1 459 70.8
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.8e-192 676.4 468 69.7
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 3.0e-192 675.6 497 66.8
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 3.9e-192 675.2 458 70.5
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 8.7e-192 674.1 459 70.4
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.5e-191 673.3 525 64.6
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.5e-191 673.3 525 64.6
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 1.9e-191 672.9 491 67.8
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 3.3e-191 672.2 458 71.2
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 4.3e-191 671.8 507 65.3
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 7.4e-191 671.0 462 69.5
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 3.7e-190 668.7 495 67.5
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 6.3e-190 667.9 482 68.3
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 8.2e-190 667.5 482 68.0
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 1.4e-189 666.8 461 67.5
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.5e-188 663.3 483 67.7
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 4.5e-188 661.8 489 65.6
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 4.5e-188 661.8 499 65.9
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 1.3e-187 660.2 463 67.8
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 1.7e-187 659.8 498 65.5
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 5.0e-187 658.3 464 69.0
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 6.5e-187 657.9 457 70.0
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 8.5e-187 657.5 499 66.3
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 8.5e-187 657.5 503 64.2
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 1.4e-186 656.8 463 68.0
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.9e-186 656.4 460 68.0
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 4.2e-186 655.2 498 65.7
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 5.5e-186 654.8 485 66.4
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.2e-185 653.7 491 66.0
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 2.7e-185 652.5 497 65.4
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.4e-184 650.2 458 68.8
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 3.9e-184 648.7 489 64.2
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 2.0e-183 646.4 495 65.1
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 3.3e-183 645.6 501 64.5
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.3e-183 645.2 504 63.9
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.7e-183 644.8 474 65.8
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.7e-183 644.8 459 68.4
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.7e-183 644.8 458 67.9
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 2.2e-182 642.9 500 63.6
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 2.2e-182 642.9 463 66.3
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 8.2e-182 641.0 504 61.1
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 8.2e-182 641.0 495 64.2
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 9.1e-181 637.5 506 62.5
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 5.9e-180 634.8 491 65.4
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 1.7e-179 633.3 510 61.4
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 5.0e-179 631.7 518 60.2
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 6.5e-179 631.3 467 65.7
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.4e-178 630.2 457 66.1
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 2.5e-178 629.4 496 61.3
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.6e-177 626.7 490 61.8
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 1.6e-177 626.7 490 63.3
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 2.7e-177 625.9 493 62.3
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 3.6e-177 625.5 515 60.6
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 4.7e-177 625.2 510 61.2
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.4e-176 623.6 518 59.8
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 5.1e-176 621.7 495 63.0
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 6.7e-176 621.3 461 65.7
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.0e-175 619.8 459 64.3
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 4.4e-175 618.6 499 60.9
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 4.4e-175 618.6 468 64.3
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 7.4e-175 617.8 512 59.2
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 9.7e-175 617.5 493 61.5
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 2.8e-174 615.9 499 60.5
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 3.5e-172 609.0 489 61.6
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 5.0e-171 605.1 500 59.4
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.6e-169 600.1 499 58.5
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 2.1e-169 599.7 489 61.1
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 6.1e-169 598.2 404 69.1
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 3.0e-168 595.9 460 62.8
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 4.4e-167 592.0 474 61.6
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.2e-166 589.7 470 60.4
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 4.8e-166 588.6 507 58.0
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 4.5e-164 582.0 510 57.8
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 7.7e-164 581.3 499 56.5
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 1.0e-163 580.9 457 63.2
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 5.0e-163 578.6 446 64.6
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 4.2e-162 575.5 394 69.3
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 2.0e-159 566.6 422 64.9
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 3.4e-159 565.8 461 61.0
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 3.4e-159 565.8 494 55.5
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 2.2e-155 553.1 435 60.9
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 2.7e-153 546.2 461 57.5
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 8.0e-145 518.1 311 78.5
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.6e-143 513.1 383 64.0
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-140 504.2 427 58.5
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 1.2e-140 504.2 295 79.3
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 3.0e-139 499.6 311 74.3
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 5.2e-136 488.8 303 75.9
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 3.2e-133 479.6 310 69.7
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 7.5e-127 458.4 468 47.4
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.4e-120 437.6 541 42.7
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.2e-118 430.3 273 70.3
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.1e-116 423.7 383 56.4
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.3e-110 404.4 477 43.8
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 1.5e-106 391.0 239 77.8
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 2.5e-106 390.2 240 77.9
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 2.4e-104 383.6 238 76.5
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 4.5e-87 326.2 491 42.2
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 7.1e-85 318.9 196 77.0
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 7.4e-82 308.9 339 50.1
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 6.9e-80 302.4 198 71.7
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 3.2e-77 293.5 275 53.1
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.5e-74 284.6 242 59.1
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 3.2e-69 266.9 269 52.4
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 4.5e-63 246.5 166 72.3
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 1.9e-53 214.5 198 55.6
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-52 211.8 198 55.1
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 4.7e-52 209.9 157 66.2
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 2.2e-49 201.1 156 58.3
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 2.2e-49 201.1 156 58.3
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-48 198.7 124 69.4
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.4e-48 198.4 189 50.8
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-46 190.7 413 28.8
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.7e-42 176.4 109 77.1
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 5.4e-40 169.9 198 48.5
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 3.2e-37 160.6 163 52.1
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 5.5e-37 159.8 106 63.2
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 4.7e-36 156.8 266 36.5
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 7.0e-32 142.9 160 48.8
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 9.2e-32 142.5 226 38.9
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.9e-30 137.5 217 39.2
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 5.0e-30 136.7 161 46.6
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.1e-29 135.6 152 47.4
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 2.3e-27 127.9 76 69.7
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 2.3e-27 127.9 76 69.7
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 2.3e-27 127.9 98 65.3
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.5e-26 125.2 101 64.4
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 1.7e-25 121.7 92 62.0
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 2.4e-24 117.9 85 60.0
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 1.1e-19 102.4 90 56.7
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 6.4e-17 93.2 72 63.9
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 7.0e-16 89.7 59 66.1
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 1.9e-13 81.6 92 46.7
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 4.4e-10 70.5 167 31.1
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 9.2e-08 62.8 34 91.2


User provided reference genes

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