Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A169G88 Lonicera japonica HOM05D006843 ORTHO05D008517 2.7e-180 635.2 319 100.0
CSS0043197 Camellia sinensis var. sinensis HOM05D006843 ORTHO05D008517 7.3e-109 397.9 302 68.2
Actinidia05093 Actinidia chinensis HOM05D006843 ORTHO05D008517 1.6e-108 396.7 299 68.9
Rhsim06G0217400 Rhododendron simsii HOM05D006843 ORTHO05D008517 1.1e-107 394.0 302 69.5
GSVIVG01037656001 Vitis vinifera HOM05D006843 ORTHO05D008517 1.1e-107 394.0 302 67.2
Nitab4.5_0003495g0070 Nicotiana tabacum HOM05D006843 ORTHO05D008517 1.9e-104 383.3 294 67.0
Hma1.2p1_0673F.1_g201400 Hydrangea macrophylla HOM05D006843 ORTHO05D008517 5.4e-104 381.7 298 65.4
Peaxi162Scf00235g00218 Petunia axillaris HOM05D006843 ORTHO05D008517 2.7e-103 379.4 299 65.9
Nitab4.5_0007360g0010 Nicotiana tabacum HOM05D006843 ORTHO05D008517 2.3e-102 376.3 294 66.3
CAN.G337.136 Capsicum annuum HOM05D006843 ORTHO05D008517 3.9e-102 375.6 294 65.0
CiPaw.11G190100 Carya illinoinensis HOM05D006843 ORTHO05D008517 1.9e-101 373.2 302 64.6
Cc05_g13830 Coffea canephora HOM05D006843 ORTHO05D008517 2.5e-101 372.9 299 64.5
PGSC0003DMG402022316 Solanum tuberosum HOM05D006843 ORTHO05D008517 2.5e-101 372.9 294 64.6
QL08p010009 Quercus lobata HOM05D006843 ORTHO05D008517 7.4e-101 371.3 301 65.1
Thecc.07G035800 Theobroma cacao HOM05D006843 ORTHO05D008517 1.3e-100 370.5 298 65.4
Dinv22258 Davidia involucrata HOM05D006843 ORTHO05D008517 1.6e-100 370.2 276 68.8
Solyc07g064630.4 Solanum lycopersicum HOM05D006843 ORTHO05D008517 1.6e-100 370.2 294 64.3
Duzib268G1400 Durio zibethinus HOM05D006843 ORTHO05D008517 2.8e-100 369.4 298 64.4
HanXRQChr11g0337271 Helianthus annuus HOM05D006843 ORTHO05D008517 6.2e-100 368.2 300 64.3
Gohir.A01G079900 Gossypium hirsutum HOM05D006843 ORTHO05D008517 1.8e-99 366.7 298 63.4
Haze_09681 Corylus avellana HOM05D006843 ORTHO05D008517 4.0e-99 365.5 302 63.6
ECA236G1023 Erigeron canadensis HOM05D006843 ORTHO05D008517 4.0e-99 365.5 297 64.3
Gohir.D01G067100 Gossypium hirsutum HOM05D006843 ORTHO05D008517 4.0e-99 365.5 298 63.1
Cfa020337 Carpinus fangiana HOM05D006843 ORTHO05D008517 9.0e-99 364.4 302 63.2
MSTRG.6924 Avicennia marina HOM05D006843 ORTHO05D008517 2.6e-98 362.8 300 63.0
TAR624G1415 Trochodendron aralioides HOM05D006843 ORTHO05D008517 4.5e-98 362.1 300 65.0
Sopen07g032830 Solanum pennellii HOM05D006843 ORTHO05D008517 5.8e-98 361.7 301 62.8
Nn1g03519 Nelumbo nucifera HOM05D006843 ORTHO05D008517 7.6e-98 361.3 302 63.6
TWI39G1240 Tripterygium wilfordii HOM05D006843 ORTHO05D008517 2.9e-97 359.4 302 61.9
Gorai.002G089000 Gossypium raimondii HOM05D006843 ORTHO05D008517 1.4e-96 357.1 298 62.1
Manes.03G129700 Manihot esculenta HOM05D006843 ORTHO05D008517 1.4e-96 357.1 300 61.7
Prupe.4G214500 Prunus persica HOM05D006843 ORTHO05D008517 4.2e-96 355.5 302 61.3
ClCG09G010830 Citrullus lanatus HOM05D006843 ORTHO05D008517 6.0e-95 351.7 297 62.0
Lsat_1_v5_gn_7_109981 Lactuca sativa HOM05D006843 ORTHO05D008517 1.3e-94 350.5 298 62.4
Cpa.g.sc12.302 Carica papaya HOM05D006843 ORTHO05D008517 1.8e-94 350.1 304 61.8
CsaV3_7G021850 Cucumis sativus L. HOM05D006843 ORTHO05D008517 3.0e-94 349.4 299 61.9
MD11G1217200 Malus domestica HOM05D006843 ORTHO05D008517 8.7e-94 347.8 302 59.9
MELO3C013160.2 Cucumis melo HOM05D006843 ORTHO05D008517 1.5e-93 347.1 299 61.9
PGR083G2310 Punica granatum HOM05D006843 ORTHO05D008517 2.5e-93 346.3 299 60.5
Ca_06326_v3 Cicer arietinum L. HOM05D006843 ORTHO05D008517 9.6e-93 344.4 299 59.9
CiPaw.12G130200 Carya illinoinensis HOM05D006843 ORTHO05D008517 1.6e-92 343.6 301 60.8
Glyma.14G022900 Glycine max HOM05D006843 ORTHO05D008517 2.8e-92 342.8 299 60.2
MBI18_g14135_MAGBIO Magnolia biondii HOM05D006843 ORTHO05D008517 4.8e-92 342.0 300 59.7
CANSAT11G0475 Cannabis sativa HOM05D006843 ORTHO05D008517 1.1e-91 340.9 298 60.4
Carub.0007s1386 Capsella rubella HOM05D006843 ORTHO05D008517 1.4e-91 340.5 298 60.4
Glyma.02G291800 Glycine max HOM05D006843 ORTHO05D008517 1.4e-91 340.5 299 60.2
Lalb_Chr04g0248381 Lupinus albus HOM05D006843 ORTHO05D008517 1.4e-91 340.5 304 58.2
Thhalv10025611m.g Eutrema salsugineum HOM05D006843 ORTHO05D008517 3.1e-91 339.3 299 60.9
AT4G26980 Arabidopsis thaliana HOM05D006843 ORTHO05D008517 9.0e-91 337.8 298 59.4
Ciclev10008752m.g Citrus clementina HOM05D006843 ORTHO05D008517 1.5e-90 337.0 299 60.5
THA.LOC104809268 Tarenaya hassleriana HOM05D006843 ORTHO05D008517 2.0e-90 336.7 294 60.5
TPR.G1211 Trifolium pratense HOM05D006843 ORTHO05D008517 2.0e-90 336.7 299 58.9
Hma1.2p1_0673F.1_g201390 Hydrangea macrophylla HOM05D006843 ORTHO05D008517 2.6e-90 336.3 302 58.3
Medtr5g092970 Medicago truncatula HOM05D006843 ORTHO05D008517 4.5e-90 335.5 298 58.4
Phvul.008G268300 Phaseolus vulgaris HOM05D006843 ORTHO05D008517 7.6e-90 334.7 299 59.2
DCAR_012722 Daucus carota HOM05D006843 ORTHO05D008517 1.0e-89 334.3 299 60.5
SGA_v2.0_scaffold165G38275 Striga asiatica HOM05D006843 ORTHO05D008517 2.2e-89 333.2 295 57.6
A03p56990 Brassica napus HOM05D006843 ORTHO05D008517 5.0e-89 332.0 300 60.3
Psat2g011720 Pisum sativum HOM05D006843 ORTHO05D008517 5.0e-89 332.0 293 59.0
EL10Ac4g07802 Beta vulgaris HOM05D006843 ORTHO05D008517 1.9e-88 330.1 304 58.2
BraA03t14769Z Brassica rapa HOM05D006843 ORTHO05D008517 2.5e-88 329.7 298 60.1
Eucgr.F00758 Eucalyptus grandis HOM05D006843 ORTHO05D008517 2.5e-88 329.7 300 57.7
AL7G25850 Arabidopsis lyrata HOM05D006843 ORTHO05D008517 3.2e-88 329.3 298 58.1
Migut.M01756 Erythranthe guttata HOM05D006843 ORTHO05D008517 3.2e-88 329.3 297 58.6
CARHR234590 Cardamine hirsuta HOM05D006843 ORTHO05D008517 4.2e-88 328.9 298 59.4
Sc03g0008560 Simmondsia chinensis HOM05D006843 ORTHO05D008517 5.5e-88 328.6 295 58.6
arahy.Tifrunner.gnm1.ann1.Q92UKX Arachis hypogaea HOM05D006843 ORTHO05D008517 9.3e-88 327.8 294 58.8
arahy.Tifrunner.gnm1.ann1.0IA02T Arachis hypogaea HOM05D006843 ORTHO05D008517 1.6e-87 327.0 294 58.8
arahy.Tifrunner.gnm1.ann1.57CCTN Arachis hypogaea HOM05D006843 ORTHO05D008517 1.6e-87 327.0 294 58.8
arahy.Tifrunner.gnm1.ann1.BV1YAY Arachis hypogaea HOM05D006843 ORTHO05D008517 1.6e-87 327.0 294 58.8
arahy.Tifrunner.gnm1.ann1.H57FKH Arachis hypogaea HOM05D006843 ORTHO05D008517 1.6e-87 327.0 294 58.8
Potri.011G090700 Populus trichocarpa HOM05D006843 ORTHO05D008517 1.6e-87 327.0 299 57.2
BcaC06g32719 Brassica carinata HOM05D006843 ORTHO05D008517 2.1e-87 326.6 301 59.5
C07p55080 Brassica napus HOM05D006843 ORTHO05D008517 4.6e-87 325.5 299 59.5
VMungo0647G1675 Vigna mungo HOM05D006843 ORTHO05D008517 4.6e-87 325.5 301 59.1
arahy.Tifrunner.gnm1.ann1.J1CT6Y Arachis hypogaea HOM05D006843 ORTHO05D008517 7.9e-87 324.7 294 58.5
BolC7t46005H Brassica oleracea HOM05D006843 ORTHO05D008517 1.3e-86 323.9 294 59.5
LjContig00272g0007634 Lotus japonicus HOM05D006843 ORTHO05D008517 1.3e-86 323.9 302 57.9
Aa31LG5G10440 Aethionema arabicum HOM05D006843 ORTHO05D008517 8.7e-86 321.2 298 57.4
RcHm_v2.0_Chr5g0040061 Rosa chinensis HOM05D006843 ORTHO05D008517 3.3e-85 319.3 295 59.0
Sabra11G0086300 Salix brachista HOM05D006843 ORTHO05D008517 8.2e-84 314.7 289 56.7
AUR62015782 Chenopodium quinoa HOM05D006843 ORTHO05D008517 1.1e-83 314.3 293 56.7
Ah.04g165900 Amaranthus hybridus HOM05D006843 ORTHO05D008517 1.8e-83 313.5 297 57.2
FAN25G2076 Fragaria x ananassa HOM05D006843 ORTHO05D008517 4.1e-83 312.4 295 56.3
FvH4_3g22820 Fragaria vesca HOM05D006843 ORTHO05D008517 1.2e-82 310.8 295 55.9
Aqoxy4G01855 Aquilegia oxysepala HOM05D006843 ORTHO05D008517 1.0e-81 307.8 295 53.2
FAN16G2069 Fragaria x ananassa HOM05D006843 ORTHO05D008517 1.3e-81 307.4 295 55.9
Sed0013659 Sechium edule HOM05D006843 ORTHO05D008517 2.2e-81 306.6 293 56.3
unitig_8.g4621 Utricularia gibba HOM05D006843 ORTHO05D008517 2.9e-81 306.2 296 55.7
Zm00001eb224560 Zea mays HOM05D006843 ORTHO05D008517 3.8e-81 305.8 295 55.3
HPP92_013325 Vanilla planifolia HOM05D006843 ORTHO05D008517 1.9e-80 303.5 309 52.1
Zm00001eb273720 Zea mays HOM05D006843 ORTHO05D008517 6.7e-78 295.0 299 54.5
AUR62020435 Chenopodium quinoa HOM05D006843 ORTHO05D008517 4.8e-68 262.3 294 49.7
PSO063G3629 Papaver somniferum HOM05D006843 ORTHO05D008517 9.4e-64 248.1 296 49.7
PSO170G2271 Papaver somniferum HOM05D006843 ORTHO05D008517 3.0e-62 243.0 293 48.1
Thhalv10026846m.g Eutrema salsugineum HOM05D006843 ORTHO05D008517 7.5e-61 238.4 296 48.3
Mapoly0001s0246 Marchantia polymorpha HOM05D006843 ORTHO05D008517 1.7e-57 227.3 296 43.9
Pp3c9_17980 Physcomitrium patens HOM05D006843 ORTHO05D008517 4.7e-55 219.2 298 44.3
ATR0490G005 Amborella trichopoda HOM05D006843 ORTHO05D008517 2.4e-51 206.8 179 57.5
Atru.chr2.3418 Acer truncatum HOM05D006843 ORTHO05D008517 7.0e-43 178.7 161 58.4
Haze_01866 Corylus avellana HOM05D006843 ORTHO05D008517 1.0e-41 174.9 186 55.4
SMO234G0011 Selaginella moellendorffii HOM05D006843 ORTHO05D008517 1.0e-41 174.9 290 38.3
CBR_g34195 Chara braunii HOM05D006843 ORTHO05D008517 1.3e-36 157.9 357 32.8
Hund02000 Selenicereus undatus HOM05D006843 ORTHO05D008517 1.2e-31 141.4 164 47.6
vmacro11722 Vaccinium macrocarpon HOM05D006843 ORTHO05D008517 1.7e-28 131.0 163 47.2
Psat5g064560 Pisum sativum HOM05D006843 ORTHO05D008517 2.3e-25 120.6 86 66.3
Psat4g156200 Pisum sativum HOM05D006843 ORTHO05D008517 3.0e-25 120.2 86 66.3
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 1.5e-24 117.9 83 71.1
Psat7g029280 Pisum sativum HOM05D006843 ORTHO05D008517 3.3e-24 116.7 86 64.0
CDE02G2447 Ceratophyllum demersum HOM05D006843 ORTHO05D008517 1.4e-22 111.3 94 58.5
Os06g0679700 Oryza sativa ssp. japonica HOM05D006843 ORTHO05D008517 1.9e-19 100.9 83 60.2
Dinv20053 Davidia involucrata HOM05D006843 ORTHO05D008517 1.1e-11 75.1 124 37.9
Psat3g185160 Pisum sativum HOM05D006843 ORTHO05D008517 5.4e-11 72.8 52 67.3
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 7.1e-11 72.4 52 67.3
Psat7g126680 Pisum sativum HOM05D006843 ORTHO05D008517 9.2e-11 72.0 55 61.8
MCO05G180 Micromonas commoda HOM05D006843 ORTHO05D008517 1.6e-10 71.2 196 28.1
ATR0926G001 Amborella trichopoda HOM05D006843 ORTHO05D008517 1.8e-06 57.8 56 53.6


User provided reference genes

Program Settings