Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 7.8e-135 483.8 243 100.0
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 2.7e-87 325.9 244 67.2
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 1.0e-86 323.9 243 64.6
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 8.1e-84 314.3 243 63.0
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 2.1e-79 299.7 243 63.4
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 7.9e-79 297.7 244 61.5
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 3.9e-78 295.4 243 60.1
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 1.1e-77 293.9 243 58.8
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 4.0e-75 285.4 244 57.4
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 2.9e-73 279.3 243 55.1
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 2.5e-72 276.2 244 54.9
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 2.1e-71 273.1 244 55.7
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 3.5e-71 272.3 244 54.9
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 7.9e-71 271.2 244 55.3
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 7.9e-71 271.2 244 55.7
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 7.9e-71 271.2 244 54.9
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 3.9e-70 268.9 243 54.7
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 5.1e-70 268.5 244 54.9
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 6.7e-70 268.1 245 57.1
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 6.7e-70 268.1 244 57.4
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 1.9e-69 266.5 243 57.2
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 4.3e-69 265.4 243 53.5
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 7.4e-69 264.6 243 54.7
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 9.7e-69 264.2 243 56.0
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 1.3e-68 263.8 243 56.4
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 3.7e-68 262.3 242 56.2
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 3.1e-67 259.2 245 54.3
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 4.1e-67 258.8 243 55.1
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 6.9e-67 258.1 244 55.3
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 5.9e-66 255.0 245 51.4
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 1.0e-65 254.2 245 50.6
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 1.3e-65 253.8 243 48.6
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 1.7e-65 253.4 248 49.6
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 1.7e-65 253.4 243 54.7
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 2.2e-65 253.1 245 53.9
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 1.9e-64 250.0 248 48.8
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 3.2e-64 249.2 202 62.4
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 5.5e-64 248.4 246 52.4
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 5.5e-64 248.4 245 51.0
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 2.7e-63 246.1 244 55.7
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 2.7e-63 246.1 245 49.8
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 1.0e-62 244.2 243 52.7
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 1.0e-62 244.2 243 52.3
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 3.9e-62 242.3 244 48.4
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 5.1e-62 241.9 244 47.1
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 2.5e-61 239.6 245 49.4
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 4.3e-61 238.8 244 48.4
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 4.3e-61 238.8 244 48.4
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 2.2e-60 236.5 244 49.6
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 3.7e-60 235.7 244 45.9
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 8.2e-60 234.6 246 49.6
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 1.8e-59 233.4 241 51.5
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 4.1e-59 232.3 244 48.0
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 9.1e-59 231.1 244 47.5
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 1.2e-58 230.7 246 46.7
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 4.5e-58 228.8 244 45.9
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 4.5e-58 228.8 244 45.9
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 4.5e-58 228.8 244 45.9
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 7.7e-58 228.0 243 49.0
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 1.0e-57 227.6 244 46.7
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 1.0e-57 227.6 246 46.7
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 1.3e-57 227.3 244 45.9
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 1.4e-56 223.8 244 46.3
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 1.4e-56 223.8 244 46.3
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 9.4e-56 221.1 168 64.3
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 1.6e-55 220.3 267 44.2
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 1.0e-54 217.6 293 39.6
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 2.3e-54 216.5 201 54.7
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 3.0e-54 216.1 244 49.6
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 3.9e-54 215.7 245 48.2
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 5.1e-54 215.3 244 48.0
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 6.7e-54 214.9 222 49.1
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 3.3e-53 212.6 244 45.9
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 5.7e-53 211.8 245 46.1
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 9.7e-53 211.1 244 45.9
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 1.1e-51 207.6 206 51.0
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 2.4e-51 206.5 174 58.6
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 7.7e-50 201.4 186 57.5
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 1.7e-44 183.7 244 42.2
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 2.4e-43 179.9 244 41.8
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 2.6e-42 176.4 241 38.2
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 1.0e-41 174.5 249 38.2
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 1.3e-41 174.1 249 38.6
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 2.2e-41 173.3 247 39.7
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 2.9e-41 172.9 243 38.7
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 5.0e-41 172.2 252 39.7
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 1.5e-40 170.6 175 48.6
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 1.9e-40 170.2 174 47.7
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 2.3e-38 163.3 251 37.1
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 2.3e-38 163.3 251 37.1
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 2.3e-38 163.3 251 37.1
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 6.3e-36 155.2 239 39.7
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 8.3e-36 154.8 203 41.9
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 4.5e-34 149.1 175 44.0
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 1.0e-33 147.9 156 44.2
SEGI_00651 Sequoiadendron giganteum HOM05D007471 ORTHO05D009481 1.5e-32 144.1 247 34.8
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 4.7e-31 139.0 238 36.1
Peaxi162Scf00289g00310 Petunia axillaris HOM05D007471 ORTHO05D009481 1.7e-17 94.0 96 52.1
FAN05G5088 Fragaria x ananassa HOM05D000100 ORTHO05D000052 2.2e-12 77.0 72 52.8
Lsat_1_v5_gn_3_93600 Lactuca sativa HOM05D007471 ORTHO05D233800 1.9e-11 73.9 89 46.1
ClCG02G003080 Citrullus lanatus HOM05D007471 ORTHO05D009481 3.0e-09 66.6 73 46.6
Ah.10g032600 Amaranthus hybridus HOM05D007471 ORTHO05D009481 1.5e-08 64.3 70 50.0
Peaxi162Scf00289g00039 Petunia axillaris HOM05D007471 ORTHO05D009481 8.0e-07 58.5 77 39.0


User provided reference genes

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