Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 8.4e-154 548.9 759 100.0
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 1.3e-85 322.4 754 85.1
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 4.9e-85 320.5 750 85.3
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 4.3e-81 307.4 760 83.7
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 1.1e-79 302.8 751 83.5
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 1.3e-77 295.8 751 83.8
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 2.2e-77 295.0 755 83.0
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 7.1e-76 290.0 760 78.6
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 9.2e-76 289.7 742 83.7
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 2.7e-75 288.1 752 83.1
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 3.5e-75 287.7 751 72.7
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 1.7e-74 285.4 740 83.2
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 4.3e-73 280.8 746 82.7
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 7.3e-73 280.0 760 82.2
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 3.6e-72 277.7 748 83.0
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.1e-71 274.6 728 84.8
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.1e-71 274.6 728 84.8
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 4.0e-71 274.2 754 80.6
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.2e-70 272.7 738 82.2
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.4e-70 270.8 184 73.9
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 5.8e-70 270.4 751 81.2
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 7.6e-70 270.0 746 82.0
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 1.7e-69 268.9 754 80.2
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 8.4e-69 266.5 733 82.9
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 3.2e-68 264.6 759 81.6
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 7.1e-68 263.5 181 72.4
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.6e-67 262.3 188 71.3
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 6.0e-67 260.4 756 79.6
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 7.8e-67 260.0 738 69.5
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 7.8e-67 260.0 177 74.0
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 1.7e-66 258.8 175 75.4
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 2.3e-66 258.5 183 69.9
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 3.9e-66 257.7 759 78.1
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 5.1e-66 257.3 744 82.1
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 6.6e-66 256.9 181 69.1
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 6.6e-66 256.9 167 76.0
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 8.7e-66 256.5 701 87.0
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 1.5e-65 255.8 183 68.9
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 4.3e-65 254.2 745 80.9
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 2.1e-64 251.9 760 80.1
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 4.8e-64 250.8 175 68.6
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 1.1e-63 249.6 187 66.8
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.4e-63 249.2 175 69.1
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 9.0e-63 246.5 751 81.4
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 1.5e-62 245.7 759 79.8
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 1.5e-62 245.7 187 65.2
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 3.4e-62 244.6 747 80.3
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 5.8e-62 243.8 745 81.2
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 7.6e-62 243.4 747 81.1
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 9.9e-62 243.0 179 65.4
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.3e-61 242.7 701 85.6
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 1.7e-61 242.3 741 79.8
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 3.8e-61 241.1 167 70.1
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 3.8e-61 241.1 174 67.2
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 6.4e-61 240.4 742 79.6
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 3.2e-60 238.0 749 80.4
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 4.2e-60 237.7 169 69.2
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 7.1e-60 236.9 759 78.8
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.6e-59 235.7 186 63.4
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 2.1e-59 235.3 165 69.1
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 3.5e-59 234.6 747 79.0
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 7.9e-59 233.4 171 67.8
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 1.0e-58 233.0 178 64.0
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 1.0e-58 233.0 170 68.2
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.3e-58 231.9 188 65.4
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.0e-58 231.5 189 65.6
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.0e-58 231.5 187 65.8
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 3.9e-58 231.1 743 80.3
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 5.1e-58 230.7 173 64.7
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 1.5e-57 229.2 174 63.2
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 3.3e-57 228.0 179 66.5
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 2.1e-56 225.3 158 67.1
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 2.4e-55 221.9 725 80.6
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.9e-55 220.3 185 63.8
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 1.5e-54 219.2 167 65.3
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 2.6e-54 218.4 181 60.2
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 3.4e-54 218.0 157 67.5
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 4.9e-53 214.2 178 60.1
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 1.1e-52 213.0 169 62.7
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 1.1e-52 213.0 168 63.7
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 5.5e-52 210.7 159 67.3
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 2.1e-51 208.8 181 59.1
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 6.0e-51 207.2 143 68.5
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 1.9e-49 202.2 750 77.5
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.5e-46 192.6 189 57.1
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 3.8e-45 188.0 119 80.7
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.9e-45 187.6 140 70.7
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 8.4e-45 186.8 683 83.0
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.1e-44 186.4 154 53.9
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.4e-44 186.0 141 67.4
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 9.3e-44 183.3 155 56.8
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 9.3e-44 183.3 159 54.1
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 1.2e-43 183.0 175 53.7
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 1.3e-42 179.5 131 63.4
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 1.8e-42 179.1 147 59.2
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 1.8e-42 179.1 156 59.0
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 1.8e-42 179.1 156 59.0
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 1.8e-42 179.1 160 54.4
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 2.3e-42 178.7 158 51.3
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 5.1e-42 177.6 156 56.4
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 6.7e-42 177.2 151 57.0
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 1.9e-41 175.6 148 57.4
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 1.3e-40 172.9 116 74.1
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 2.1e-40 172.2 152 59.2
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 2.1e-40 172.2 135 62.2
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 4.8e-40 171.0 151 54.3
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 6.3e-40 170.6 152 53.9
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 1.4e-39 169.5 147 55.8
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.4e-39 168.7 122 62.3
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 4.5e-38 164.5 152 52.0
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 8.4e-37 160.2 139 56.8
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 1.1e-36 159.8 127 60.6
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 2.7e-35 155.2 148 52.7
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 6.1e-35 154.1 121 61.2
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 6.1e-35 154.1 138 52.9
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 7.9e-35 153.7 161 47.8
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 1.0e-34 153.3 161 48.4
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 2.3e-34 152.1 152 53.3
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 8.7e-34 150.2 144 52.8
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 2.5e-33 148.7 151 53.6
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 2.5e-33 148.7 130 60.0
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 2.8e-32 145.2 128 52.3
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 4.1e-31 141.4 175 46.9
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 5.0e-29 134.4 143 44.8
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 1.5e-25 122.9 147 48.3
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 2.2e-24 119.0 105 60.0
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 5.3e-23 114.4 143 42.0
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.9e-20 105.9 124 46.8
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 8.5e-13 80.5 88 48.9
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 1.8e-10 72.8 46 82.6
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 6.3e-08 64.3 130 32.3
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 4.1e-07 61.6 175 24.6
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 5.3e-07 61.2 177 27.1
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 3.5e-06 58.5 164 24.4
Phvul.008G197400 Phaseolus vulgaris HOM05D002453 ORTHO05D002107 3.5e-06 58.5 164 25.0
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 4.5e-06 58.2 164 26.2
Lsat_1_v5_gn_1_13300 Lactuca sativa HOM05D002453 ORTHO05D002107 7.7e-06 57.4 175 25.1


User provided reference genes

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