Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7P716T17 Lonicera japonica HOM05D004982 ORTHO05D002186 7.3e-35 149.8 67 100.0
HanXRQChr12g0373981 Helianthus annuus HOM05D004982 ORTHO05D002186 1.3e-12 75.9 54 61.1
Lsat_1_v5_gn_5_121881 Lactuca sativa HOM05D004982 ORTHO05D002186 1.3e-12 75.9 61 57.4
Nitab4.5_0001166g0010 Nicotiana tabacum HOM05D004982 ORTHO05D002186 1.8e-12 75.5 76 50.0
PGSC0003DMG400018830 Solanum tuberosum HOM05D004982 ORTHO05D002186 1.9e-11 72.0 62 51.6
Solyc05g040040.1 Solanum lycopersicum HOM05D004982 ORTHO05D002186 2.5e-11 71.6 62 51.6
Sopen05g025150 Solanum pennellii HOM05D004982 ORTHO05D002186 2.5e-11 71.6 62 51.6
Dinv21279 Davidia involucrata HOM05D004982 ORTHO05D002186 3.3e-11 71.2 74 50.0
Lsat_1_v5_gn_9_104061 Lactuca sativa HOM05D004982 ORTHO05D002186 4.3e-11 70.9 54 57.4
MSTRG.12246 Avicennia marina HOM05D004982 ORTHO05D002186 5.6e-11 70.5 75 48.0
CAN.G1036.3 Capsicum annuum HOM05D004982 ORTHO05D002186 5.6e-11 70.5 61 54.1
Manes.12G065100 Manihot esculenta HOM05D004982 ORTHO05D002186 5.6e-11 70.5 74 47.3
DCAR_019701 Daucus carota HOM05D004982 ORTHO05D002186 7.4e-11 70.1 63 52.4
Peaxi162Scf00147g01916 Petunia axillaris HOM05D004982 ORTHO05D002186 7.4e-11 70.1 69 47.8
Lj8P134T70 Lonicera japonica HOM05D004982 ORTHO05D002186 9.6e-11 69.7 69 47.8
Nitab4.5_0002987g0020 Nicotiana tabacum HOM05D004982 ORTHO05D002186 9.6e-11 69.7 76 46.1
Oeu029969.1 Olea europaea HOM05D004982 ORTHO05D002186 9.6e-11 69.7 67 50.7
CANSAT64G0146 Cannabis sativa HOM05D004982 ORTHO05D002186 2.8e-10 68.2 71 50.7
CiPaw.03G280400 Carya illinoinensis HOM05D004982 ORTHO05D002186 3.7e-10 67.8 72 48.6
Duzib133G0730 Durio zibethinus HOM05D004982 ORTHO05D002186 3.7e-10 67.8 67 49.3
Migut.M00043 Erythranthe guttata HOM05D004982 ORTHO05D002186 3.7e-10 67.8 54 51.9
Peaxi162Scf00776g00012 Petunia axillaris HOM05D004982 ORTHO05D002186 3.7e-10 67.8 77 45.5
TAR629G0570 Trochodendron aralioides HOM05D004982 ORTHO05D002186 4.8e-10 67.4 54 53.7
Cfa014236 Carpinus fangiana HOM05D004982 ORTHO05D002186 6.2e-10 67.0 70 50.0
Haze_12651 Corylus avellana HOM05D004982 ORTHO05D002186 6.2e-10 67.0 70 50.0
Haze_12653 Corylus avellana HOM05D004982 ORTHO05D002186 6.2e-10 67.0 70 50.0
Duzib138G0769 Durio zibethinus HOM05D004982 ORTHO05D002186 6.2e-10 67.0 66 45.5
QL08p028387 Quercus lobata HOM05D004982 ORTHO05D002186 6.2e-10 67.0 68 51.5
SalBow7G1604 Salvia bowleyana HOM05D004982 ORTHO05D002186 8.2e-10 66.6 54 53.7
TWI75G0082 Tripterygium wilfordii HOM05D004982 ORTHO05D002186 8.2e-10 66.6 71 47.9
Solyc07g047680.3 Solanum lycopersicum HOM05D004982 ORTHO05D002186 1.1e-09 66.2 61 52.5
PGSC0003DMG400006123 Solanum tuberosum HOM05D004982 ORTHO05D002186 1.1e-09 66.2 61 52.5
CSS0012122 Camellia sinensis var. sinensis HOM05D004982 ORTHO05D002186 1.4e-09 65.9 54 55.6
CSS0024183 Camellia sinensis var. sinensis HOM05D004982 ORTHO05D002186 1.4e-09 65.9 54 55.6
FAN02G0651 Fragaria x ananassa HOM05D004982 ORTHO05D002186 1.4e-09 65.9 69 49.3
Thecc.01G192300 Theobroma cacao HOM05D004982 ORTHO05D002186 1.4e-09 65.9 67 49.3
TWI18G1163 Tripterygium wilfordii HOM05D004982 ORTHO05D002186 1.4e-09 65.9 54 53.7
TWI23G0673 Tripterygium wilfordii HOM05D004982 ORTHO05D002186 1.4e-09 65.9 53 54.7
TWI36G1761 Tripterygium wilfordii HOM05D004982 ORTHO05D002186 1.4e-09 65.9 53 54.7
TAR627G1196 Trochodendron aralioides HOM05D004982 ORTHO05D002186 1.4e-09 65.9 60 48.3
FvH4_6g40870 Fragaria vesca HOM05D004982 ORTHO05D002186 1.8e-09 65.5 69 49.3
FAN09G2641 Fragaria x ananassa HOM05D004982 ORTHO05D002186 1.8e-09 65.5 69 49.3
FAN14G0821 Fragaria x ananassa HOM05D004982 ORTHO05D002186 1.8e-09 65.5 69 49.3
Hma1.2p1_0545F.1_g176050 Hydrangea macrophylla HOM05D004982 ORTHO05D002186 1.8e-09 65.5 67 49.3
Potri.014G165700 Populus trichocarpa HOM05D004982 ORTHO05D002186 1.8e-09 65.5 75 46.7
Oeu064360.1 Olea europaea HOM05D004982 ORTHO05D002186 2.4e-09 65.1 64 46.9
FAN05G3922 Fragaria x ananassa HOM05D004982 ORTHO05D002186 3.1e-09 64.7 69 49.3
RcHm_v2.0_Chr2g0156431 Rosa chinensis HOM05D004982 ORTHO05D002186 3.1e-09 64.7 69 47.8
Glyma.14G009000 Glycine max HOM05D004982 ORTHO05D002186 4.0e-09 64.3 71 50.7
ClCG02G009320 Citrullus lanatus HOM05D004982 ORTHO05D002186 5.3e-09 63.9 71 46.5
HanXRQChr03g0075171 Helianthus annuus HOM05D004982 ORTHO05D002186 5.3e-09 63.9 55 50.9
Sabra14G0126300 Salix brachista HOM05D004982 ORTHO05D002186 5.3e-09 63.9 75 45.3
CiPaw.04G196500 Carya illinoinensis HOM05D004982 ORTHO05D002186 6.9e-09 63.5 69 44.9
MELO3C025964.2 Cucumis melo HOM05D004982 ORTHO05D002186 6.9e-09 63.5 71 46.5
CsaV3_6G009570 Cucumis sativus L. HOM05D004982 ORTHO05D002186 6.9e-09 63.5 71 46.5
Gorai.001G098900 Gossypium raimondii HOM05D004982 ORTHO05D002186 9.0e-09 63.2 49 53.1
Nn1g07475 Nelumbo nucifera HOM05D004982 ORTHO05D002186 9.0e-09 63.2 77 44.2
Gohir.D07G092300 Gossypium hirsutum HOM05D004982 ORTHO05D002186 1.2e-08 62.8 49 51.0
HanXRQChr14g0458611 Helianthus annuus HOM05D004982 ORTHO05D002186 1.2e-08 62.8 64 50.0
Sopen07g024130 Solanum pennellii HOM05D004982 ORTHO05D002186 1.5e-08 62.4 61 50.8
Glyma.02G304900 Glycine max HOM05D004982 ORTHO05D002186 2.0e-08 62.0 71 49.3
GSVIVG01030062001 Vitis vinifera HOM05D000053 ORTHO05D002186 2.6e-08 61.6 54 51.9
Sed0018645 Sechium edule HOM05D004982 ORTHO05D002186 3.4e-08 61.2 70 45.7
SGA_v2.0_scaffold73G24499 Striga asiatica HOM05D004982 ORTHO05D002186 3.4e-08 61.2 69 43.5
Aqoxy4G02235 Aquilegia oxysepala HOM05D004982 ORTHO05D002186 4.5e-08 60.8 53 50.9
Prupe.3G200200 Prunus persica HOM05D004982 ORTHO05D002186 4.5e-08 60.8 69 49.3
Atru.chr6.3374 Acer truncatum HOM05D004982 ORTHO05D002186 5.8e-08 60.5 78 43.6
Ca_06447_v3 Cicer arietinum L. HOM05D004982 ORTHO05D002186 5.8e-08 60.5 72 47.2
DCAR_021099 Daucus carota HOM05D004982 ORTHO05D002186 5.8e-08 60.5 73 45.2
Eucgr.A01039 Eucalyptus grandis HOM05D004982 ORTHO05D002186 5.8e-08 60.5 55 52.7
Lalb_Chr04g0247341 Lupinus albus HOM05D004982 ORTHO05D002186 5.8e-08 60.5 72 47.2
Medtr5g097150 Medicago truncatula HOM05D004982 ORTHO05D002186 5.8e-08 60.5 72 47.2
Nn1g03222 Nelumbo nucifera HOM05D004982 ORTHO05D002186 5.8e-08 60.5 79 39.2
Cc05_g02080 Coffea canephora HOM05D004982 ORTHO05D002186 7.6e-08 60.1 54 48.1
Cc05_g02090 Coffea canephora HOM05D004982 ORTHO05D002186 7.6e-08 60.1 54 48.1
MD17G1114700 Malus domestica HOM05D004982 ORTHO05D002186 1.0e-07 59.7 69 47.8
arahy.Tifrunner.gnm1.ann1.IU3Y9Z Arachis hypogaea HOM05D004982 ORTHO05D002186 1.7e-07 58.9 56 53.6
arahy.Tifrunner.gnm1.ann1.M8NM2L Arachis hypogaea HOM05D004982 ORTHO05D002186 1.7e-07 58.9 56 53.6
Gorai.001G221300 Gossypium raimondii HOM05D004982 ORTHO05D002186 1.7e-07 58.9 59 49.2
MD09G1123900 Malus domestica HOM05D004982 ORTHO05D002186 1.7e-07 58.9 69 46.4
Psat2g004800 Pisum sativum HOM05D004982 ORTHO05D002186 1.7e-07 58.9 72 45.8
Sed0002771 Sechium edule HOM05D004982 ORTHO05D002186 1.7e-07 58.9 70 44.3
VMungo0647G1787 Vigna mungo HOM05D004982 ORTHO05D002186 1.7e-07 58.9 70 48.6
COL.COLO4_33355 Corchorus olitorius HOM05D004982 ORTHO05D002186 2.2e-07 58.5 66 42.4
Phvul.008G284300 Phaseolus vulgaris HOM05D004982 ORTHO05D002186 2.2e-07 58.5 70 48.6
Gohir.D07G197600 Gossypium hirsutum HOM05D004982 ORTHO05D002186 2.9e-07 58.2 59 49.2
Duzib211G0315 Durio zibethinus HOM05D004982 ORTHO05D002186 3.8e-07 57.8 60 48.3
Gohir.A07G191100 Gossypium hirsutum HOM05D004982 ORTHO05D002186 3.8e-07 57.8 66 45.5
Gohir.A07G191200 Gossypium hirsutum HOM05D004982 ORTHO05D002186 3.8e-07 57.8 66 47.0
Sed0011483 Sechium edule HOM05D004982 ORTHO05D002186 3.8e-07 57.8 55 52.7
Actinidia07875 Actinidia chinensis HOM05D004982 ORTHO05D002186 6.5e-07 57.0 55 50.9
Actinidia27650 Actinidia chinensis HOM05D004982 ORTHO05D002186 6.5e-07 57.0 55 50.9
Gohir.D07G197500 Gossypium hirsutum HOM05D004982 ORTHO05D002186 6.5e-07 57.0 53 49.1
Gorai.001G221200 Gossypium raimondii HOM05D004982 ORTHO05D002186 6.5e-07 57.0 53 49.1
Sc21g0000640 Simmondsia chinensis HOM05D004982 ORTHO05D002186 6.5e-07 57.0 55 45.5
Sc21g0000690 Simmondsia chinensis HOM05D004982 ORTHO05D002186 6.5e-07 57.0 55 45.5
Lalb_Chr04g0247541 Lupinus albus HOM05D004982 ORTHO05D002186 1.1e-06 56.2 57 49.1
TPR.G1238 Trifolium pratense HOM05D004982 ORTHO05D002186 1.9e-06 55.5 72 44.4
Ciclev10016961m.g Citrus clementina HOM05D004982 ORTHO05D002186 3.2e-06 54.7 73 42.5
LjContig00081g0025622 Lotus japonicus HOM05D004982 ORTHO05D002186 4.2e-06 54.3 56 51.8
Actinidia09785 Actinidia chinensis HOM05D004982 ORTHO05D002186 5.5e-06 53.9 55 47.3
EL10Ac9g22690 Beta vulgaris HOM05D004982 ORTHO05D002186 7.1e-06 53.5 86 38.4
Rhsim01G0200200 Rhododendron simsii HOM05D004982 ORTHO05D002186 7.1e-06 53.5 55 47.3
Rhsim06G0174900 Rhododendron simsii HOM05D004982 ORTHO05D002186 7.1e-06 53.5 55 47.3


User provided reference genes

Program Settings