Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7P707T11 Lonicera japonica HOM05D008234 ORTHO05D010422 1.5e-189 666.0 333 100.0
Dinv14224 Davidia involucrata HOM05D008234 ORTHO05D010422 5.6e-128 461.5 330 69.4
Hma1.2p1_1255F.1_g270650 Hydrangea macrophylla HOM05D008234 ORTHO05D010422 5.5e-115 418.3 330 62.7
Actinidia31219 Actinidia chinensis HOM05D008234 ORTHO05D010422 1.2e-109 400.6 333 60.4
TWI34G1157 Tripterygium wilfordii HOM05D008234 ORTHO05D010422 4.7e-106 388.7 333 58.9
MSTRG.25893 Avicennia marina HOM05D008234 ORTHO05D010422 2.2e-100 369.8 331 58.0
Lj1g0008618 Lotus japonicus HOM05D008234 ORTHO05D010422 8.0e-98 361.3 334 54.5
Migut.A00244 Erythranthe guttata HOM05D008234 ORTHO05D010422 6.7e-97 358.2 332 54.8
Prupe.1G453000 Prunus persica HOM05D008234 ORTHO05D010422 8.8e-97 357.8 330 54.5
Lsat_1_v5_gn_6_11021 Lactuca sativa HOM05D008234 ORTHO05D010422 3.3e-96 355.9 327 54.7
SGA_v2.0_scaffold185G40113 Striga asiatica HOM05D008234 ORTHO05D010422 5.3e-94 348.6 330 52.1
Ca_12814_v3 Cicer arietinum L. HOM05D008234 ORTHO05D010422 6.5e-92 341.7 331 53.2
Ah.16g105160 Amaranthus hybridus HOM05D008234 ORTHO05D010422 8.5e-92 341.3 331 52.0
TPR.G12012 Trifolium pratense HOM05D008234 ORTHO05D010422 1.1e-91 340.9 331 52.9
CDE04G1659 Ceratophyllum demersum HOM05D008234 ORTHO05D010422 3.2e-91 339.3 327 49.8
QL12p026340 Quercus lobata HOM05D008234 ORTHO05D010422 1.2e-90 337.4 331 52.9
SalBow4G0332 Salvia bowleyana HOM05D008234 ORTHO05D010422 3.6e-90 335.9 335 51.6
TAR626G1903 Trochodendron aralioides HOM05D008234 ORTHO05D010422 2.3e-89 333.2 330 52.1
Cc08_g08970 Coffea canephora HOM05D008234 ORTHO05D010422 2.6e-88 329.7 332 50.9
HanXRQChr02g0048071 Helianthus annuus HOM05D008234 ORTHO05D010422 2.8e-87 326.2 330 50.6
FAN20G2600 Fragaria x ananassa HOM05D008234 ORTHO05D010422 9.1e-86 321.2 330 50.0
Aqoxy7G03839 Aquilegia oxysepala HOM05D008234 ORTHO05D010422 2.7e-85 319.7 328 48.5
RcHm_v2.0_Chr6g0305711 Rosa chinensis HOM05D008234 ORTHO05D010422 3.2e-83 312.8 330 49.4
CiPaw.08G023300 Carya illinoinensis HOM05D008234 ORTHO05D010422 2.1e-82 310.1 331 49.8
Hund19548 Selenicereus undatus HOM05D008234 ORTHO05D010422 1.3e-79 300.8 330 47.0
Sabra06G0190100 Salix brachista HOM05D008234 ORTHO05D010422 3.1e-78 296.2 331 46.5
ECA233G2242 Erigeron canadensis HOM05D008234 ORTHO05D010422 9.1e-78 294.7 292 51.4
Glyma.14G141400 Glycine max HOM05D008234 ORTHO05D010422 1.1e-75 287.7 334 46.4
Medtr1g008360 Medicago truncatula HOM05D008234 ORTHO05D010422 3.3e-75 286.2 331 47.7
GSVIVG01035674001 Vitis vinifera HOM05D008234 ORTHO05D010422 7.2e-75 285.0 333 47.4
CSS0041765 Camellia sinensis var. sinensis HOM05D008234 ORTHO05D010422 1.6e-74 283.9 333 46.8
Gohir.A03G071900 Gossypium hirsutum HOM05D008234 ORTHO05D010422 2.8e-74 283.1 323 46.1
Manes.03G062500 Manihot esculenta HOM05D008234 ORTHO05D010422 6.1e-74 282.0 331 45.0
AUR62023021 Chenopodium quinoa HOM05D008234 ORTHO05D010422 5.2e-73 278.9 325 46.5
Psat6g034200 Pisum sativum HOM05D008234 ORTHO05D010422 2.6e-72 276.6 331 44.7
MD08G1118800 Malus domestica HOM05D008234 ORTHO05D010422 4.1e-70 269.2 328 46.6
FAN15G0125 Fragaria x ananassa HOM05D008234 ORTHO05D010422 1.7e-68 263.8 330 44.2
Zm00001eb004480 Zea mays HOM05D008234 ORTHO05D010422 1.7e-68 263.8 326 40.2
AUR62009335 Chenopodium quinoa HOM05D008234 ORTHO05D010422 8.6e-68 261.5 290 49.0
Os03g0159700 Oryza sativa ssp. japonica HOM05D008234 ORTHO05D010422 4.3e-67 259.2 330 40.9
FvH4_2g36160 Fragaria vesca HOM05D008234 ORTHO05D010422 5.6e-67 258.8 328 43.6
Phvul.001G078800 Phaseolus vulgaris HOM05D008234 ORTHO05D010422 5.6e-67 258.8 333 44.1
EL10Ac2g04079 Beta vulgaris HOM05D008234 ORTHO05D010422 2.8e-66 256.5 329 44.1
Oeu011264.1 Olea europaea HOM05D008234 ORTHO05D010422 2.8e-66 256.5 296 47.3
Ciclev10008407m.g Citrus clementina HOM05D008234 ORTHO05D010422 1.8e-65 253.8 327 44.6
Psat6g034160 Pisum sativum HOM05D008234 ORTHO05D010422 7.0e-62 241.9 331 43.2
Thecc.03G110200 Theobroma cacao HOM05D008234 ORTHO05D010422 2.0e-61 240.4 333 39.9
Potri.006G243000 Populus trichocarpa HOM05D008234 ORTHO05D010422 1.3e-60 237.7 331 40.2
COL.COLO4_28841 Corchorus olitorius HOM05D008234 ORTHO05D010422 3.9e-60 236.1 328 39.6
Duzib068G0878 Durio zibethinus HOM05D008234 ORTHO05D010422 5.6e-59 232.3 333 39.6
HPP92_009609 Vanilla planifolia HOM05D008234 ORTHO05D010422 9.5e-59 231.5 289 41.2
Gorai.003G103400 Gossypium raimondii HOM05D008234 ORTHO05D001322 1.4e-54 217.6 278 43.9
ATR0697G092 Amborella trichopoda HOM05D008234 ORTHO05D010422 1.9e-54 217.2 327 38.8
MELO3C003586.2 Cucumis melo HOM05D008234 ORTHO05D010422 1.3e-52 211.1 227 44.9
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 1.5e-51 207.6 305 37.7
Cfa013340 Carpinus fangiana HOM05D001758 ORTHO05D005969 1.9e-51 207.2 271 41.0
CsaV3_3G047390 Cucumis sativus L. HOM05D008234 ORTHO05D010422 7.3e-51 205.3 223 43.9
Haze_21845 Corylus avellana HOM05D008234 ORTHO05D010422 1.5e-48 197.6 271 39.9
unitig_27.g25079 Utricularia gibba HOM05D006621 ORTHO05D008425 1.6e-42 177.6 331 33.5
Gohir.D03G098650 Gossypium hirsutum HOM05D008234 ORTHO05D010422 1.1e-41 174.9 137 62.0
Nn2g11729 Nelumbo nucifera HOM05D008234 ORTHO05D010422 3.2e-38 163.3 331 32.9
SEGI_11609 Sequoiadendron giganteum HOM05D008234 ORTHO05D010422 1.6e-34 151.0 196 40.3
Gohir.D03G098600 Gossypium hirsutum HOM05D008234 ORTHO05D010422 3.8e-31 139.8 123 55.3
Hma1.2p1_1434F.1_g283110 Hydrangea macrophylla HOM05D008234 ORTHO05D010422 5.3e-25 119.4 92 55.4
arahy.Tifrunner.gnm1.ann1.CUF5YV Arachis hypogaea HOM05D002479 ORTHO05D002675 2.2e-15 87.4 303 25.4
SHI15422 Sapria himalayana HOM05D005775 ORTHO05D000023 1.6e-13 81.3 314 22.0
Sed0021692 Sechium edule HOM05D008234 ORTHO05D010422 6.0e-13 79.3 86 44.2
Dinv11864 Davidia involucrata HOM05D008234 ORTHO05D010422 1.1e-11 75.1 57 57.9
CDE10G0767 Ceratophyllum demersum HOM05D000001 ORTHO05D000003 4.3e-11 73.2 322 23.6
AagrBONN_evm.TU.Sc2ySwM_369.313 Anthoceros agrestis HOM05D005775 ORTHO05D000023 3.7e-10 70.1 332 22.0
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 6.2e-10 69.3 322 23.3
GSVIVG01032162001 Vitis vinifera HOM05D001779 ORTHO05D001753 6.9e-09 65.9 169 26.6
TWI79G0596 Tripterygium wilfordii HOM05D007173 ORTHO05D009151 1.2e-08 65.1 164 26.2
TAR383G0679 Trochodendron aralioides HOM05D007173 ORTHO05D009151 1.2e-08 65.1 152 24.3
PSO063G5446 Papaver somniferum HOM05D000001 ORTHO05D000003 1.5e-08 64.7 234 24.4
Os05g0365500 Oryza sativa ssp. japonica HOM05D002825 ORTHO05D003824 3.4e-08 63.5 202 23.8
Eucgr.B00648 Eucalyptus grandis HOM05D000001 ORTHO05D000003 4.5e-08 63.2 207 23.2
BraA07t28860Z Brassica rapa HOM05D007173 ORTHO05D009151 5.8e-08 62.8 173 23.7
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 5.8e-08 62.8 322 22.7
Thecc.01G407600 Theobroma cacao HOM05D001779 ORTHO05D001753 5.8e-08 62.8 143 28.7
VMungo0647G0382 Vigna mungo HOM05D001779 ORTHO05D001753 5.8e-08 62.8 169 25.4
RcHm_v2.0_Chr3g0483111 Rosa chinensis HOM05D007173 ORTHO05D009151 7.6e-08 62.4 167 23.4
THA.LOC104819486 Tarenaya hassleriana HOM05D007173 ORTHO05D009151 7.6e-08 62.4 181 22.7
Lalb_Chr18g0048891 Lupinus albus HOM05D007173 ORTHO05D009151 1.0e-07 62.0 167 22.2
Sed0001001 Sechium edule HOM05D001779 ORTHO05D001753 1.3e-07 61.6 146 28.1
Thecc.09G250500 Theobroma cacao HOM05D000001 ORTHO05D000003 1.3e-07 61.6 194 24.2
MELO3C023572.2 Cucumis melo HOM05D001779 ORTHO05D001753 1.7e-07 61.2 143 28.0
Duzib177G1124 Durio zibethinus HOM05D000001 ORTHO05D000003 1.7e-07 61.2 276 23.2
Ca_19095_v3 Cicer arietinum L. HOM05D001779 ORTHO05D001753 2.2e-07 60.8 140 27.9
CsaV3_7G030850 Cucumis sativus L. HOM05D001779 ORTHO05D001753 2.2e-07 60.8 143 28.7
Prupe.3G134300 Prunus persica HOM05D007173 ORTHO05D009151 2.2e-07 60.8 135 27.4
QL05p064661 Quercus lobata HOM05D000001 ORTHO05D000003 2.2e-07 60.8 188 23.4
RcHm_v2.0_Chr3g0483141 Rosa chinensis HOM05D007173 ORTHO05D009151 2.2e-07 60.8 167 23.4
Atru.chr4.20 Acer truncatum HOM05D000001 ORTHO05D000003 3.8e-07 60.1 214 23.4
A07p10660 Brassica napus HOM05D007173 ORTHO05D009151 3.8e-07 60.1 173 23.1
COL.COLO4_26887 Corchorus olitorius HOM05D000001 ORTHO05D000003 5.0e-07 59.7 187 26.7
Mapoly0043s0117 Marchantia polymorpha HOM05D006106 ORTHO05D007662 5.0e-07 59.7 164 25.6
Rhsim08G0188000 Rhododendron simsii HOM05D007173 ORTHO05D009151 5.0e-07 59.7 162 22.8
FAN06G0941 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.4e-07 58.9 239 22.2
Glyma.02G271600 Glycine max HOM05D007173 ORTHO05D009151 8.4e-07 58.9 333 21.3
CiPaw.03G118400 Carya illinoinensis HOM05D007173 ORTHO05D009151 1.1e-06 58.5 164 24.4
QL05p064694 Quercus lobata HOM05D000001 ORTHO05D000003 1.1e-06 58.5 226 23.5
Cfa007278 Carpinus fangiana HOM05D007173 ORTHO05D009151 1.4e-06 58.2 164 24.4
Haze_14814 Corylus avellana HOM05D007173 ORTHO05D009151 1.4e-06 58.2 164 24.4
Eucgr.G03360 Eucalyptus grandis HOM05D001779 ORTHO05D001753 1.4e-06 58.2 140 25.7
RcHm_v2.0_Chr1g0317271 Rosa chinensis HOM05D001779 ORTHO05D001753 1.4e-06 58.2 169 25.4
SEGI_02727 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 1.4e-06 58.2 216 24.1
Sopen01g036300 Solanum pennellii HOM05D000001 ORTHO05D000003 1.4e-06 58.2 177 24.3
vmacro19218 Vaccinium macrocarpon HOM05D007173 ORTHO05D009151 1.4e-06 58.2 162 21.6
Cpa.g.sc108.57 Carica papaya HOM05D007358 ORTHO05D009117 1.9e-06 57.8 183 24.0
COL.COLO4_06474 Corchorus olitorius HOM05D007173 ORTHO05D009151 1.9e-06 57.8 177 24.3
FvH4_7g16210 Fragaria vesca HOM05D000001 ORTHO05D000003 1.9e-06 57.8 239 22.2
QL06p048956 Quercus lobata HOM05D000001 ORTHO05D000003 1.9e-06 57.8 230 25.7
THA.LOC104807686 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 1.9e-06 57.8 210 22.4
GSVIVG01026463001 Vitis vinifera HOM05D007173 ORTHO05D009151 1.9e-06 57.8 155 24.5
BcaC06g35432 Brassica carinata HOM05D007173 ORTHO05D009151 2.5e-06 57.4 168 22.6
C07p16260 Brassica napus HOM05D007173 ORTHO05D009151 2.5e-06 57.4 168 22.6
Psat5g209840 Pisum sativum HOM05D001779 ORTHO05D001753 2.5e-06 57.4 132 29.5
Prupe.4G268300 Prunus persica HOM05D000001 ORTHO05D000003 2.5e-06 57.4 175 22.9
QL07p046901 Quercus lobata HOM05D000001 ORTHO05D000003 2.5e-06 57.4 188 22.9
Actinidia31096 Actinidia chinensis HOM05D000001 ORTHO05D000003 3.2e-06 57.0 239 24.7
CSS0004396 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 3.2e-06 57.0 171 24.0
Cc10_g12890 Coffea canephora HOM05D000001 ORTHO05D000003 3.2e-06 57.0 209 26.3
Lj6g0024647 Lotus japonicus HOM05D000001 ORTHO05D000003 3.2e-06 57.0 202 23.8
MD02G1305700 Malus domestica HOM05D001779 ORTHO05D001753 3.2e-06 57.0 169 24.9
AagrBONN_evm.TU.Sc2ySwM_117.627 Anthoceros agrestis HOM05D006414 ORTHO05D007780 4.2e-06 56.6 104 31.7
AagrBONN_evm.TU.Sc2ySwM_369.154 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.2e-06 56.6 192 24.0
EL10Ac1g01607 Beta vulgaris HOM05D000424 ORTHO05D000355 4.2e-06 56.6 143 29.4
CSS0002295 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 4.2e-06 56.6 176 24.4
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 4.2e-06 56.6 147 32.7
CSS0039833 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 4.2e-06 56.6 171 24.0
Cfa010613 Carpinus fangiana HOM05D000001 ORTHO05D009595 4.2e-06 56.6 190 25.3
COL.COLO4_33271 Corchorus olitorius HOM05D000001 ORTHO05D000003 4.2e-06 56.6 197 23.9
Gorai.011G226000 Gossypium raimondii HOM05D007173 ORTHO05D009151 4.2e-06 56.6 173 23.1
MD17G1234700 Malus domestica HOM05D007173 ORTHO05D009151 4.2e-06 56.6 331 22.1
Oeu006556.1 Olea europaea HOM05D001779 ORTHO05D001753 4.2e-06 56.6 173 27.7
QL10p041753 Quercus lobata HOM05D007173 ORTHO05D009151 4.2e-06 56.6 167 24.0
Rhsim03G0215000 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.2e-06 56.6 218 23.9
Sc09g0002270 Simmondsia chinensis HOM05D007173 ORTHO05D009151 4.2e-06 56.6 155 23.2
Solyc01g090510.2 Solanum lycopersicum HOM05D000001 ORTHO05D000003 4.2e-06 56.6 166 25.3
Gohir.D10G201300 Gossypium hirsutum HOM05D007173 ORTHO05D009151 5.5e-06 56.2 174 23.6
MD02G1306000 Malus domestica HOM05D001779 ORTHO05D001753 5.5e-06 56.2 169 24.9
Potri.006G090900 Populus trichocarpa HOM05D000001 ORTHO05D009595 5.5e-06 56.2 203 25.6
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 5.5e-06 56.2 174 25.3
Migut.D00798 Erythranthe guttata HOM05D007173 ORTHO05D009151 7.2e-06 55.8 158 22.2
Glyma.14G007500 Glycine max HOM05D001779 ORTHO05D001753 7.2e-06 55.8 169 24.9
MD03G1273200 Malus domestica HOM05D005775 ORTHO05D000023 7.2e-06 55.8 120 29.2
MD11G1295800 Malus domestica HOM05D005775 ORTHO05D000023 7.2e-06 55.8 122 27.9
QL11p004771 Quercus lobata HOM05D000001 ORTHO05D000003 7.2e-06 55.8 196 23.5
ATR0487G016 Amborella trichopoda HOM05D005775 ORTHO05D000023 9.3e-06 55.5 335 19.1
arahy.Tifrunner.gnm1.ann1.5SK0BH Arachis hypogaea HOM05D007173 ORTHO05D009151 9.3e-06 55.5 155 23.9
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 9.3e-06 55.5 199 23.1
ECA232G3256 Erigeron canadensis HOM05D001779 ORTHO05D001753 9.3e-06 55.5 176 26.1
Thhalv10022652m.g Eutrema salsugineum HOM05D007173 ORTHO05D009151 9.3e-06 55.5 173 22.5
FAN06G3831 Fragaria x ananassa HOM05D001779 ORTHO05D001753 9.3e-06 55.5 169 25.4
FAN08G2967 Fragaria x ananassa HOM05D002007 ORTHO05D000355 9.3e-06 55.5 185 21.1
FAN24G1052 Fragaria x ananassa HOM05D003210 ORTHO05D000001 9.3e-06 55.5 151 26.5
Medtr3g008430 Medicago truncatula HOM05D007173 ORTHO05D009151 9.3e-06 55.5 165 24.2
Phvul.009G216300 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 9.3e-06 55.5 200 22.0
Psat2g000200 Pisum sativum HOM05D000001 ORTHO05D000003 9.3e-06 55.5 120 28.3
RcHm_v2.0_Chr2g0167331 Rosa chinensis HOM05D000001 ORTHO05D000003 9.3e-06 55.5 234 26.9
THA.LOC104815579 Tarenaya hassleriana HOM05D000001 ORTHO05D009595 9.3e-06 55.5 146 26.7


User provided reference genes

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