Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 0.0e+00 1125.2 592 100.0
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 1.5e-272 942.6 600 82.7
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 1.2e-266 922.9 599 81.3
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 2.8e-263 911.8 598 79.1
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 6.3e-263 910.6 599 80.5
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 2.5e-259 898.7 599 79.0
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 1.9e-251 872.5 599 76.3
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 9.4e-251 870.2 594 77.8
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 1.6e-250 869.4 599 77.0
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 2.7e-250 868.6 599 76.1
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 6.1e-250 867.5 620 74.8
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 1.4e-249 866.3 600 78.0
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 3.9e-249 864.8 598 75.9
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 8.8e-249 863.6 600 75.7
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 2.6e-248 862.1 599 75.0
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 4.4e-248 861.3 599 75.8
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 5.7e-248 860.9 599 76.0
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 2.8e-247 858.6 593 77.6
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.7e-247 858.2 599 75.8
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.7e-247 858.2 595 76.3
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 4.8e-247 857.8 599 75.8
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 8.2e-247 857.1 604 74.2
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 1.4e-246 856.3 598 75.6
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 3.1e-246 855.1 605 74.7
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 4.1e-246 854.7 597 77.2
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 7.0e-246 854.0 599 77.6
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 7.0e-246 854.0 596 75.3
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.0e-245 852.4 594 75.6
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 2.0e-245 852.4 597 74.7
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 2.0e-245 852.4 598 76.1
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 2.6e-245 852.0 596 76.3
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 2.6e-245 852.0 598 76.1
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 3.4e-245 851.7 599 74.6
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 4.5e-245 851.3 594 75.4
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 7.7e-245 850.5 594 76.3
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 7.7e-245 850.5 594 75.4
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 7.7e-245 850.5 578 78.0
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.0e-244 850.1 578 78.2
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.3e-244 849.7 599 74.5
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 1.7e-244 849.4 598 76.3
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 1.7e-244 849.4 598 75.9
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 6.5e-244 847.4 599 75.3
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 1.1e-243 846.7 593 75.4
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 5.5e-243 844.3 598 74.4
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 1.2e-242 843.2 592 74.7
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 2.7e-242 842.0 587 75.0
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 4.7e-242 841.3 597 74.5
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 4.7e-242 841.3 574 77.7
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 8.0e-242 840.5 599 74.5
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.4e-241 839.7 599 74.5
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.4e-241 839.7 599 74.0
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.0e-241 838.6 599 73.6
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 3.0e-241 838.6 597 74.2
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 3.9e-241 838.2 600 74.8
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 6.7e-241 837.4 596 74.7
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 8.8e-241 837.0 597 73.9
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 2.0e-240 835.9 599 74.3
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 2.0e-240 835.9 600 74.5
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 2.6e-240 835.5 597 74.4
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 7.4e-240 833.9 586 74.7
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 1.3e-239 833.2 599 73.6
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 2.8e-239 832.0 594 73.9
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 6.3e-239 830.9 599 73.8
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 6.3e-239 830.9 595 72.9
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 8.2e-239 830.5 597 73.2
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 1.8e-238 829.3 587 74.1
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 3.1e-238 828.6 602 74.3
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 5.3e-238 827.8 599 73.1
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 1.6e-237 826.2 594 74.1
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 2.6e-237 825.5 630 70.6
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 5.9e-237 824.3 598 73.4
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 7.7e-237 823.9 598 73.6
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 6.5e-236 820.8 567 76.7
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 8.5e-236 820.5 594 73.9
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 1.1e-235 820.1 588 71.9
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.5e-235 819.7 599 72.0
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 7.2e-235 817.4 591 72.8
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 2.1e-234 815.8 609 73.2
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.7e-234 815.5 599 71.5
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 1.0e-233 813.5 590 71.9
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 1.4e-233 813.1 568 75.2
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.0e-233 812.0 588 73.1
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 4.0e-233 811.6 599 71.3
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 5.2e-233 811.2 588 71.3
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 8.8e-233 810.4 590 71.7
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 2.0e-232 809.3 590 71.5
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 2.6e-232 808.9 588 71.6
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 3.3e-232 808.5 699 64.4
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 5.7e-232 807.7 596 71.3
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.3e-231 806.6 595 71.6
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 3.7e-231 805.1 588 71.4
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 4.8e-231 804.7 591 71.6
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 6.3e-231 804.3 510 80.2
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 1.1e-230 803.5 600 72.8
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 1.8e-230 802.7 588 73.3
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 9.1e-230 800.4 591 70.1
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 9.1e-230 800.4 513 80.7
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.2e-229 800.0 588 70.6
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 3.5e-229 798.5 573 72.8
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 4.5e-229 798.1 590 70.5
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 5.9e-229 797.7 591 71.4
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 7.7e-229 797.3 599 69.1
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 7.7e-229 797.3 592 69.9
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 1.0e-228 797.0 600 72.2
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 3.8e-228 795.0 592 70.9
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 2.5e-227 792.3 592 69.9
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 9.4e-227 790.4 701 63.8
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.2e-226 790.0 598 71.9
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 1.6e-226 789.6 601 69.7
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 2.7e-226 788.9 600 71.7
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 1.4e-225 786.6 573 72.4
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 4.0e-225 785.0 590 70.2
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 1.0e-217 760.4 604 68.5
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 1.6e-210 736.5 572 68.2
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 1.6e-210 736.5 590 66.8
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 2.9e-207 725.7 575 68.0
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 2.9e-207 725.7 595 65.5
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 1.1e-198 697.2 591 63.3
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 1.6e-194 683.3 590 63.9
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.8e-194 682.6 594 64.0
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 9.2e-190 667.5 435 80.9
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 3.9e-188 662.1 512 69.5
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 5.3e-177 625.2 450 73.6
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.1e-174 617.5 480 66.9
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 1.4e-174 617.1 509 67.8
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 6.2e-154 548.5 526 59.1
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 1.3e-151 540.8 376 75.5
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 4.6e-141 505.8 373 70.0
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.9e-135 486.5 578 55.0
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.0e-135 485.7 402 67.7
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 1.4e-134 484.2 584 48.5
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 2.8e-130 469.9 326 76.7
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 3.1e-121 439.9 360 69.2
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.1e-110 404.8 252 81.0
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 1.6e-109 401.0 505 45.5
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.9e-95 353.2 230 83.5
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 2.5e-94 350.5 607 40.0
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 9.5e-94 348.6 228 77.2
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.2e-77 295.0 243 66.3
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 6.2e-69 266.2 211 64.9
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 8.7e-63 245.7 245 53.9
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 3.4e-59 233.8 321 41.1
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 5.1e-47 193.4 250 46.4
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 6.7e-47 193.0 115 79.1
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 1.3e-42 178.7 129 72.1
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 5.5e-33 146.7 137 59.1
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 3.0e-23 114.4 217 39.6
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 6.7e-23 113.2 188 43.6
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 1.8e-20 105.1 106 58.5
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.9e-18 97.8 50 86.0
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 5.0e-18 97.1 104 54.8
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 9.4e-17 92.8 52 86.5
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 9.4e-17 92.8 52 86.5
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 7.9e-16 89.7 102 49.0
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 5.1e-15 87.0 65 69.2
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.3e-13 82.4 69 66.7
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 1.1e-09 69.3 71 49.3
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 1.5e-09 68.9 70 50.0
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 2.5e-09 68.2 57 54.4
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 7.2e-09 66.6 71 47.9
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 1.4e-07 62.4 30 93.3
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 1.4e-07 62.4 30 93.3
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 3.0e-07 61.2 256 28.1


User provided reference genes

Program Settings