Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7P517T29 Lonicera japonica HOM05D000002 ORTHO05D012852 4.9e-111 404.4 199 100.0
RcHm_v2.0_Chr2g0124571 Rosa chinensis HOM05D000011 ORTHO05D000157 1.3e-18 97.4 171 40.9
RcHm_v2.0_Chr5g0032551 Rosa chinensis HOM05D000002 ORTHO05D000001 3.7e-18 95.9 123 47.2
RcHm_v2.0_Chr1g0347991 Rosa chinensis HOM05D000002 ORTHO05D000001 1.4e-17 94.0 78 64.1
FvH4_5g03531 Fragaria vesca HOM05D026255 ORTHO05D012852 3.5e-16 89.4 82 56.1
FvH4_5g11221 Fragaria vesca HOM05D000002 ORTHO05D000001 7.8e-16 88.2 120 43.3
FvH4_7g19191 Fragaria vesca HOM05D000002 ORTHO05D000001 7.8e-16 88.2 78 59.0
RcHm_v2.0_Chr5g0082731 Rosa chinensis HOM05D000002 ORTHO05D000001 3.0e-15 86.3 82 54.9
MD03G1056000 Malus domestica HOM05D000002 ORTHO05D000001 6.2e-13 78.6 196 35.7
THA.LOC104807900 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 8.9e-12 74.7 211 32.2
RcHm_v2.0_Chr1g0350631 Rosa chinensis HOM05D000002 ORTHO05D000001 1.5e-11 73.9 62 58.1
FvH4_6g11491 Fragaria vesca HOM05D000002 ORTHO05D000001 2.6e-11 73.2 43 79.1
Rhsim13G0196100 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.4e-11 72.4 157 35.7
MD04G1231400 Malus domestica HOM05D000002 ORTHO05D000001 3.7e-10 69.3 208 34.1
ECA232G1531 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.3e-10 68.2 220 28.6
MD00G1024600 Malus domestica HOM05D000002 ORTHO05D000001 8.3e-10 68.2 204 30.9
FvH4_3g08011 Fragaria vesca HOM05D000002 ORTHO05D000001 1.4e-09 67.4 43 72.1
MD07G1259300 Malus domestica HOM05D000002 ORTHO05D000157 1.4e-09 67.4 203 31.0
TPR.G11004 Trifolium pratense HOM05D000002 ORTHO05D000001 1.4e-09 67.4 199 29.1
MD17G1115400 Malus domestica HOM05D000002 ORTHO05D000001 1.9e-09 67.0 209 30.1
TPR.G20899 Trifolium pratense HOM05D000002 ORTHO05D000001 1.9e-09 67.0 210 29.5
ECA233G3640 Erigeron canadensis HOM05D004901 ORTHO05D000001 2.4e-09 66.6 195 28.7
MD16G1247000 Malus domestica HOM05D000002 ORTHO05D003361 2.4e-09 66.6 204 31.4
TPR.G14102 Trifolium pratense HOM05D000002 ORTHO05D000001 3.2e-09 66.2 43 65.1
ECA233G4466 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.1e-09 65.9 215 32.6
Sopen01g012520 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-09 65.9 228 27.6
RcHm_v2.0_Chr1g0320771 Rosa chinensis HOM05D000002 ORTHO05D000001 5.4e-09 65.5 235 30.2
TPR.G8647 Trifolium pratense HOM05D000002 ORTHO05D000001 7.0e-09 65.1 112 39.3
Aqoxy5G02395 Aquilegia oxysepala HOM05D000002 ORTHO05D000001 9.2e-09 64.7 82 45.1
ECA236G1244 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.2e-09 64.7 199 28.6
ECA236G2708 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.2e-09 64.7 203 29.1
Hma1.2p1_0883F.1_g232310 Hydrangea macrophylla HOM05D000002 ORTHO05D012852 9.2e-09 64.7 79 44.3
MD17G1248200 Malus domestica HOM05D000002 ORTHO05D000001 9.2e-09 64.7 216 31.9
Atru.chr2.2580 Acer truncatum HOM05D000002 ORTHO05D000001 1.2e-08 64.3 213 27.7
ECA233G0883 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-08 64.3 200 27.5
ECA238G4695 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-08 64.3 200 27.5
MD12G1185900 Malus domestica HOM05D000002 ORTHO05D000001 1.2e-08 64.3 211 30.8
RcHm_v2.0_Chr2g0134981 Rosa chinensis HOM05D000002 ORTHO05D000001 1.2e-08 64.3 43 69.8
ECA233G5539 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.6e-08 63.9 200 29.0
MD13G1050200 Malus domestica HOM05D000002 ORTHO05D000001 1.6e-08 63.9 228 27.6
RcHm_v2.0_Chr1g0326341 Rosa chinensis HOM05D000002 ORTHO05D000001 1.6e-08 63.9 220 29.1
TPR.G17816 Trifolium pratense HOM05D000002 ORTHO05D000001 1.6e-08 63.9 201 27.9
CSS0042232 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.0e-08 63.5 204 28.9
Nn8g39601 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.0e-08 63.5 196 30.1
MD12G1052500 Malus domestica HOM05D000002 ORTHO05D000001 2.7e-08 63.2 200 31.5
TPR.G18516 Trifolium pratense HOM05D000002 ORTHO05D000001 2.7e-08 63.2 114 37.7
CSS0045539 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.5e-08 62.8 210 31.0
ECA234G2692 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.5e-08 62.8 222 32.4
TPR.G21983 Trifolium pratense HOM05D000002 ORTHO05D000001 3.5e-08 62.8 145 33.8
ECA233G3042 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.6e-08 62.4 201 30.3
Sopen01g016220 Solanum pennellii HOM05D000002 ORTHO05D000001 4.6e-08 62.4 53 56.6
Sopen04g021560 Solanum pennellii HOM05D000002 ORTHO05D018079 4.6e-08 62.4 43 60.5
Sopen12g023520 Solanum pennellii HOM05D000002 ORTHO05D000001 4.6e-08 62.4 53 56.6
Sopen11g022270 Solanum pennellii HOM05D000002 ORTHO05D000001 6.0e-08 62.0 251 28.7
HanXRQChr13g0410331 Helianthus annuus HOM05D000002 ORTHO05D000001 7.8e-08 61.6 222 29.3
MD10G1196700 Malus domestica HOM05D000002 ORTHO05D000001 7.8e-08 61.6 212 27.4
CSS0039053 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.0e-07 61.2 210 30.5
MD14G1225200 Malus domestica HOM05D000002 ORTHO05D000001 1.0e-07 61.2 199 27.6
CSS0038576 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-07 60.8 210 30.5
ECA232G0739 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-07 60.8 211 28.9
ECA234G0762 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.7e-07 60.5 210 29.5
Sopen01g050910 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-07 60.1 205 28.3
Sopen03g027590 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-07 60.1 205 28.3
Sopen08g016690 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-07 60.1 205 28.3
Sopen08g017760 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-07 60.1 205 28.3
Sopen10g019670 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-07 60.1 205 28.3
Sopen10g024340 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-07 60.1 205 28.3
Sopen11g006290 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-07 60.1 205 28.3
Sopen11g022120 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-07 60.1 205 28.3
THA.LOC104818098 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 2.3e-07 60.1 201 29.9
CiPaw.09G081000 Carya illinoinensis HOM05D000013 ORTHO05D010607 3.0e-07 59.7 42 61.9
HanXRQChr14g0440681 Helianthus annuus HOM05D000002 ORTHO05D000001 3.0e-07 59.7 228 29.4
HanXRQChr14g0457091 Helianthus annuus HOM05D000002 ORTHO05D000001 3.0e-07 59.7 228 29.4
Nn1g01357 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.0e-07 59.7 59 47.5
QL03p020061 Quercus lobata HOM05D000002 ORTHO05D000001 3.0e-07 59.7 45 62.2
TPR.G601 Trifolium pratense HOM05D000002 ORTHO05D000001 3.0e-07 59.7 89 41.6
Atru.chr6.1203 Acer truncatum HOM05D000002 ORTHO05D000001 3.9e-07 59.3 205 30.7
ECA240G0803 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.9e-07 59.3 200 28.5
ECA240G3804 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.9e-07 59.3 189 29.6
MD14G1189500 Malus domestica HOM05D000002 ORTHO05D000001 3.9e-07 59.3 142 31.7
Ah.03g140980 Amaranthus hybridus HOM05D000002 ORTHO05D000001 5.0e-07 58.9 191 27.7
ECA234G0657 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.0e-07 58.9 201 28.9
SEGI_16566 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 5.0e-07 58.9 60 50.0
THA.LOC104817067 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 5.0e-07 58.9 187 27.3
TPR.G8161 Trifolium pratense HOM05D000002 ORTHO05D000001 6.6e-07 58.5 215 27.4
MD11G1146000 Malus domestica HOM05D000002 ORTHO05D000001 8.6e-07 58.2 204 31.4
Rhsim11G0150600 Rhododendron simsii HOM05D000002 ORTHO05D012852 8.6e-07 58.2 51 54.9
HanXRQChr14g0457791 Helianthus annuus HOM05D000013 ORTHO05D000011 1.1e-06 57.8 227 28.2
Sopen11g003490 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-06 57.8 157 31.8
CSS0044431 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-06 57.4 202 25.7
ECA233G3870 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-06 57.4 208 29.3
HanXRQChr15g0476521 Helianthus annuus HOM05D000002 ORTHO05D000001 1.5e-06 57.4 236 30.1
QL08p061042 Quercus lobata HOM05D000002 ORTHO05D000001 1.5e-06 57.4 208 31.2
Rhsim05G0196600 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.5e-06 57.4 72 43.1
ECA236G4198 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.9e-06 57.0 204 28.9
ECA236G4365 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.9e-06 57.0 204 28.9
RcHm_v2.0_Chr7g0182281 Rosa chinensis HOM05D000002 ORTHO05D000001 1.9e-06 57.0 183 31.1
RcHm_v2.0_Chr7g0210861 Rosa chinensis HOM05D000002 ORTHO05D000001 1.9e-06 57.0 43 58.1
Sopen04g009020 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-06 57.0 179 29.1
ECA232G3319 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.5e-06 56.6 192 27.6
ECA246G1242 Erigeron canadensis HOM05D000308 ORTHO05D000001 2.5e-06 56.6 234 28.2
Sopen03g026870 Solanum pennellii HOM05D000002 ORTHO05D000001 2.5e-06 56.6 205 28.3
ECA232G1227 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.3e-06 56.2 210 30.0
FvH4_3g38851 Fragaria vesca HOM05D000002 ORTHO05D000001 4.3e-06 55.8 161 33.5
TPR.G14261 Trifolium pratense HOM05D000002 ORTHO05D000001 4.3e-06 55.8 81 37.0
CSS0031686 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.6e-06 55.5 200 29.5
ECA247G2938 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.6e-06 55.5 209 27.8
PSO724G0639 Papaver somniferum HOM05D000002 ORTHO05D000001 5.6e-06 55.5 56 50.0
Atru.chr8.532 Acer truncatum HOM05D000002 ORTHO05D000001 7.3e-06 55.1 206 26.2
Aa31LG3G5060 Aethionema arabicum HOM05D000002 ORTHO05D000001 7.3e-06 55.1 211 28.0
CSS0005122 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.3e-06 55.1 216 27.3
ECA234G0889 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.3e-06 55.1 194 32.5
TPR.G40840 Trifolium pratense HOM05D000002 ORTHO05D000001 7.3e-06 55.1 54 53.7
ECA248G0638 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.5e-06 54.7 46 54.3
PSO729G0199 Papaver somniferum HOM05D000002 ORTHO05D000001 9.5e-06 54.7 144 34.0
RcHm_v2.0_Chr3g0454851 Rosa chinensis HOM05D000002 ORTHO05D000001 9.5e-06 54.7 212 28.8


User provided reference genes

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