Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 0.0e+00 1225.3 631 100.0
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 9.2e-289 996.5 634 80.6
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 2.3e-279 965.3 632 77.7
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 2.1e-277 958.7 624 80.8
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.5e-275 952.6 624 79.3
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 4.5e-275 951.0 631 79.2
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 1.2e-267 926.4 631 76.5
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 2.6e-267 925.2 624 77.9
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 3.9e-263 911.4 631 73.9
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 6.7e-263 910.6 593 80.1
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 6.9e-260 900.6 636 73.3
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 2.0e-259 899.0 636 73.6
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.0e-258 896.7 645 71.9
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 8.4e-258 893.6 638 73.2
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 1.1e-257 893.3 645 71.6
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 1.4e-257 892.9 638 73.2
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 5.5e-257 891.0 637 72.2
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 7.9e-256 887.1 640 71.9
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 1.9e-254 882.5 649 70.4
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 1.9e-254 882.5 645 70.9
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 4.3e-254 881.3 645 70.7
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 5.7e-254 880.9 645 70.7
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 2.2e-253 879.0 652 70.2
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 3.7e-253 878.2 634 71.3
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 8.2e-253 877.1 643 71.4
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 1.1e-252 876.7 647 70.9
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 1.2e-251 873.2 637 70.8
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 2.0e-251 872.5 647 70.5
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 2.0e-251 872.5 647 70.5
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 4.5e-251 871.3 634 72.1
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 8.5e-250 867.1 634 71.8
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 1.1e-249 866.7 658 69.0
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 1.1e-249 866.7 658 69.5
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 1.4e-249 866.3 633 71.2
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 5.5e-249 864.4 654 69.4
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 7.2e-249 864.0 647 70.0
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 9.4e-249 863.6 634 70.2
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 9.4e-249 863.6 634 70.0
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 1.6e-248 862.8 646 69.7
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 1.6e-248 862.8 650 68.8
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 2.7e-248 862.1 647 69.7
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 3.6e-248 861.7 646 69.8
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.0e-247 860.1 639 71.7
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.0e-247 860.1 639 71.7
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 1.8e-247 859.4 648 69.6
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 6.7e-247 857.4 616 72.6
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 1.1e-246 856.7 647 70.5
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 1.1e-246 856.7 640 70.8
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 1.5e-246 856.3 650 68.8
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.5e-246 856.3 649 70.1
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 3.3e-246 855.1 649 70.0
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 3.3e-246 855.1 634 69.9
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 4.3e-246 854.7 647 70.3
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 5.7e-246 854.4 647 70.0
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 9.7e-246 853.6 641 69.6
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 9.7e-246 853.6 645 70.2
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 1.3e-245 853.2 634 69.9
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 1.3e-245 853.2 648 69.0
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 1.7e-245 852.8 634 72.1
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 6.3e-245 850.9 647 68.6
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 1.8e-244 849.4 619 70.9
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 9.1e-244 847.0 644 70.0
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 2.6e-243 845.5 651 68.8
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 3.4e-243 845.1 649 69.0
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 1.3e-242 843.2 647 69.7
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 5.0e-242 841.3 650 69.4
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 6.5e-242 840.9 644 68.2
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 8.5e-242 840.5 639 70.1
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 1.6e-240 836.3 630 70.3
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 3.6e-240 835.1 633 69.4
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 4.7e-240 834.7 650 68.8
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 1.8e-239 832.8 651 69.0
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 3.0e-239 832.0 649 67.3
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 8.8e-239 830.5 650 67.7
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 1.3e-237 826.6 629 69.5
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 1.4e-236 823.2 631 68.5
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 3.8e-234 815.1 631 69.1
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.1e-233 813.5 640 66.7
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 2.1e-232 809.3 652 66.4
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.8e-231 806.2 650 65.8
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 7.4e-230 800.8 652 65.5
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 1.3e-229 800.0 654 64.8
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 1.3e-229 800.0 653 65.1
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 2.2e-229 799.3 652 65.0
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 2.8e-229 798.9 655 64.4
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 2.8e-229 798.9 654 64.5
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 1.1e-228 797.0 652 64.7
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 1.4e-228 796.6 650 65.8
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 1.8e-228 796.2 653 65.2
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 7.0e-228 794.3 658 64.3
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 9.1e-228 793.9 615 70.6
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 2.0e-227 792.7 656 65.2
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 4.5e-227 791.6 654 64.5
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 5.9e-227 791.2 656 64.2
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 7.7e-227 790.8 658 64.9
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 7.7e-227 790.8 661 64.0
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 1.3e-226 790.0 653 64.3
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 1.2e-224 783.5 653 64.9
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 2.3e-223 779.2 581 70.2
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 2.8e-221 772.3 648 64.7
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 1.1e-220 770.4 656 64.2
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 9.1e-220 767.3 631 66.4
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 4.5e-219 765.0 644 63.7
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 2.9e-218 762.3 650 64.6
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 1.5e-217 760.0 651 62.7
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 2.5e-217 759.2 644 63.2
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.2e-214 750.4 530 74.7
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 9.8e-214 747.3 638 61.9
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.4e-212 742.7 636 62.3
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.3e-210 736.9 636 63.1
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 3.8e-210 735.3 635 61.1
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 5.7e-206 721.5 637 59.2
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 7.0e-204 714.5 628 64.6
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 3.8e-202 708.8 643 61.3
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 8.3e-189 664.5 632 59.5
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 1.7e-186 656.8 646 55.9
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 1.1e-183 647.5 646 54.8
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 4.7e-168 595.5 638 54.1
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.3e-161 572.8 540 59.4
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 5.3e-159 565.5 614 54.2
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 1.5e-153 547.4 656 47.4
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 2.6e-150 536.6 656 47.4
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 8.4e-141 505.0 616 50.0
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 2.0e-129 467.2 663 42.4
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 6.7e-114 415.6 349 63.6
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 2.2e-109 400.6 319 69.6
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 1.2e-99 368.2 380 52.9
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 3.6e-91 340.1 243 68.3
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 3.1e-66 257.3 306 51.3
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 2.9e-40 171.0 562 27.6
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 3.0e-37 161.0 118 73.7
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 2.8e-35 154.5 118 64.4
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 5.3e-18 97.1 113 48.7
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 2.2e-16 91.7 96 56.2
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 4.6e-14 84.0 98 50.0
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 7.7e-09 66.6 51 56.9
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 5.0e-08 63.9 44 68.2
SalBow4G0612 Salvia bowleyana HOM05D005586 ORTHO05D360416 2.1e-06 58.5 46 56.5


User provided reference genes

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