Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7P457T37 Lonicera japonica HOM05D002136 ORTHO05D002145 1.6e-125 453.0 258 100.0
Nitab4.5_0005188g0020 Nicotiana tabacum HOM05D002136 ORTHO05D002145 3.7e-34 149.4 260 42.3
Dinv42867 Davidia involucrata HOM05D000882 ORTHO05D001142 3.1e-33 146.4 185 49.2
Dinv43233 Davidia involucrata HOM05D000882 ORTHO05D001142 3.1e-33 146.4 185 49.2
Actinidia04291 Actinidia chinensis HOM05D000882 ORTHO05D001142 3.8e-31 139.4 216 44.0
CAN.G551.37 Capsicum annuum HOM05D002136 ORTHO05D002145 4.7e-29 132.5 249 39.4
DCAR_014814 Daucus carota HOM05D002136 ORTHO05D002145 1.4e-28 131.0 256 41.8
Lj9C716T6 Lonicera japonica HOM05D002136 ORTHO05D002145 1.5e-27 127.5 212 43.4
Oeu021272.1 Olea europaea HOM05D002136 ORTHO05D002145 3.3e-27 126.3 290 38.3
TWI34G1274 Tripterygium wilfordii HOM05D002136 ORTHO05D002145 5.7e-27 125.6 285 37.9
Peaxi162Scf00252g00119 Petunia axillaris HOM05D002136 ORTHO05D002145 7.4e-27 125.2 186 44.1
Cc06_g15140 Coffea canephora HOM05D002136 ORTHO05D002145 4.1e-25 119.4 194 43.8
Manes.06G036600 Manihot esculenta HOM05D002136 ORTHO05D002145 1.6e-24 117.5 232 40.1
MSTRG.26283 Avicennia marina HOM05D002136 ORTHO05D002145 2.2e-23 113.6 307 35.2
HanXRQChr05g0148671 Helianthus annuus HOM05D002136 ORTHO05D002145 2.2e-23 113.6 245 36.3
Rhsim01G0035300 Rhododendron simsii HOM05D000882 ORTHO05D001142 3.8e-23 112.8 95 60.0
Actinidia38334 Actinidia chinensis HOM05D000882 ORTHO05D001142 1.5e-22 110.9 287 35.5
Cpa.g.sc46.142 Carica papaya HOM05D002136 ORTHO05D002145 1.5e-22 110.9 284 36.3
DCAR_019386 Daucus carota HOM05D002136 ORTHO05D002145 1.0e-20 104.8 269 34.9
Manes.14G112628 Manihot esculenta HOM05D002136 ORTHO05D002145 1.0e-20 104.8 254 34.3
Lsat_1_v5_gn_8_61721 Lactuca sativa HOM05D002136 ORTHO05D002145 3.0e-20 103.2 262 35.5
Glyma.02G203100 Glycine max HOM05D002136 ORTHO05D002145 6.7e-20 102.1 266 38.3
CANSAT11G0512 Cannabis sativa HOM05D002136 ORTHO05D002145 1.1e-19 101.3 285 33.7
Nitab4.5_0006527g0020 Nicotiana tabacum HOM05D002136 ORTHO05D002145 2.8e-18 96.7 275 36.0
Gohir.D06G097400 Gossypium hirsutum HOM05D002136 ORTHO05D002145 3.7e-18 96.3 261 33.7
Glyma.17G074600 Glycine max HOM05D002136 ORTHO05D002145 6.3e-18 95.5 282 36.2
Dinv41387 Davidia involucrata HOM05D002136 ORTHO05D002145 8.2e-18 95.1 188 38.3
Atru.chr7.100 Acer truncatum HOM05D002136 ORTHO05D002145 1.1e-17 94.7 137 46.7
Gohir.A06G096900 Gossypium hirsutum HOM05D002136 ORTHO05D002145 1.1e-17 94.7 262 34.4
Medtr2g460800 Medicago truncatula HOM05D002136 ORTHO05D002145 1.1e-17 94.7 297 34.7
TWI63G0145 Tripterygium wilfordii HOM05D002136 ORTHO05D002145 1.4e-17 94.4 268 35.4
PGSC0003DMG400011178 Solanum tuberosum HOM05D002136 ORTHO05D002145 2.4e-17 93.6 254 35.8
arahy.Tifrunner.gnm1.ann1.D8DRS0 Arachis hypogaea HOM05D002136 ORTHO05D002145 3.1e-17 93.2 244 36.5
Ciclev10028046m.g Citrus clementina HOM05D002136 ORTHO05D002145 9.1e-17 91.7 269 32.3
Lalb_Chr07g0179811 Lupinus albus HOM05D002136 ORTHO05D002145 9.1e-17 91.7 268 30.2
Potri.018G108200 Populus trichocarpa HOM05D002136 ORTHO05D002145 9.1e-17 91.7 313 33.2
Gorai.010G112500 Gossypium raimondii HOM05D002136 ORTHO05D002145 1.6e-16 90.9 265 32.8
arahy.Tifrunner.gnm1.ann1.CL36ZV Arachis hypogaea HOM05D002136 ORTHO05D002145 2.0e-16 90.5 244 36.1
TAR636G1536 Trochodendron aralioides HOM05D002136 ORTHO05D002145 2.0e-16 90.5 196 36.2
Phvul.009G206800 Phaseolus vulgaris HOM05D002136 ORTHO05D002145 2.7e-16 90.1 310 33.5
MD15G1153100 Malus domestica HOM05D002136 ORTHO05D002145 3.5e-16 89.7 247 34.0
Prupe.7G261500 Prunus persica HOM05D002136 ORTHO05D002145 4.5e-16 89.4 289 31.8
Gohir.A05G052200 Gossypium hirsutum HOM05D002136 ORTHO05D002145 1.0e-15 88.2 277 35.7
TPR.G31935 Trifolium pratense HOM05D002136 ORTHO05D002145 1.0e-15 88.2 118 44.1
TAR625G1124 Trochodendron aralioides HOM05D002136 ORTHO05D002145 1.0e-15 88.2 77 54.5
Aqoxy7G03429 Aquilegia oxysepala HOM05D002136 ORTHO05D002145 1.3e-15 87.8 255 31.4
MBI14_g24800_MAGBIO Magnolia biondii HOM05D002136 ORTHO05D002145 1.3e-15 87.8 190 37.4
Phvul.005G040700 Phaseolus vulgaris HOM05D002136 ORTHO05D002145 1.7e-15 87.4 280 31.1
Carub.0008s1853 Capsella rubella HOM05D002136 ORTHO05D002145 2.2e-15 87.0 251 31.9
Gohir.D13G190800 Gossypium hirsutum HOM05D002136 ORTHO05D002145 2.9e-15 86.7 236 35.2
BolC9t57832H Brassica oleracea HOM05D002136 ORTHO05D002145 3.8e-15 86.3 254 31.5
Gohir.A13G184451 Gossypium hirsutum HOM05D002136 ORTHO05D002145 3.8e-15 86.3 251 39.8
Peaxi162Scf00062g00314 Petunia axillaris HOM05D002136 ORTHO05D002145 3.8e-15 86.3 257 32.7
Gohir.D05G053700 Gossypium hirsutum HOM05D002136 ORTHO05D002145 5.0e-15 85.9 93 52.7
Sabra18G0091800 Salix brachista HOM05D002136 ORTHO05D002145 6.5e-15 85.5 98 45.9
Sopen12g005000 Solanum pennellii HOM05D002136 ORTHO05D002145 6.5e-15 85.5 214 40.2
PGSC0003DMG400007900 Solanum tuberosum HOM05D002136 ORTHO05D002145 6.5e-15 85.5 245 38.8
Nitab4.5_0002315g0120 Nicotiana tabacum HOM05D002136 ORTHO05D002145 8.5e-15 85.1 156 39.1
Thecc.09G032000 Theobroma cacao HOM05D002136 ORTHO05D002145 8.5e-15 85.1 321 35.5
Migut.K00334 Erythranthe guttata HOM05D002136 ORTHO05D002145 1.1e-14 84.7 268 35.1
FAN28G0826 Fragaria x ananassa HOM05D002136 ORTHO05D002145 1.9e-14 84.0 312 29.8
Psat1g021960 Pisum sativum HOM05D002136 ORTHO05D002145 2.5e-14 83.6 236 34.7
MSTRG.6123 Avicennia marina HOM05D002136 ORTHO05D002145 3.2e-14 83.2 294 30.6
Duzib150G0547 Durio zibethinus HOM05D002136 ORTHO05D002145 3.2e-14 83.2 219 41.1
CARHR271790 Cardamine hirsuta HOM05D002136 ORTHO05D002145 4.2e-14 82.8 260 30.0
FAN26G0651 Fragaria x ananassa HOM05D002136 ORTHO05D002145 4.2e-14 82.8 314 29.6
Lalb_Chr08g0234111 Lupinus albus HOM05D002136 ORTHO05D002145 4.2e-14 82.8 266 32.3
Sabra06G0141000 Salix brachista HOM05D002136 ORTHO05D002145 4.2e-14 82.8 98 45.9
Thhalv10013006m.g Eutrema salsugineum HOM05D002136 ORTHO05D002145 7.2e-14 82.0 265 35.1
FvH4_1g01050 Fragaria vesca HOM05D002136 ORTHO05D002145 7.2e-14 82.0 305 29.5
Ca_05791_v3 Cicer arietinum L. HOM05D002136 ORTHO05D002145 9.4e-14 81.6 189 35.4
C09p49820 Brassica napus HOM05D002136 ORTHO05D002145 1.2e-13 81.3 254 33.1
Nitab4.5_0001478g0030 Nicotiana tabacum HOM05D002136 ORTHO05D002145 1.2e-13 81.3 178 38.2
RcHm_v2.0_Chr2g0085811 Rosa chinensis HOM05D002136 ORTHO05D002145 1.6e-13 80.9 329 29.2
FAN23G0309 Fragaria x ananassa HOM05D002136 ORTHO05D002145 2.1e-13 80.5 320 28.8
Nn1g06026 Nelumbo nucifera HOM05D002136 ORTHO05D002145 2.7e-13 80.1 76 53.9
Duzib187G1505 Durio zibethinus HOM05D002136 ORTHO05D002145 6.1e-13 79.0 209 38.8
Gorai.013G216600 Gossypium raimondii HOM05D002136 ORTHO05D002145 6.1e-13 79.0 253 38.3
FAN19G2520 Fragaria x ananassa HOM05D002136 ORTHO05D002145 1.0e-12 78.2 324 28.4
Glyma.06G221600 Glycine max HOM05D002136 ORTHO05D002145 1.0e-12 78.2 93 43.0
PGR102G1057 Punica granatum HOM05D002136 ORTHO05D002145 1.0e-12 78.2 93 46.2
CSS0047757 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 1.8e-12 77.4 49 71.4
CSS0001593 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 2.3e-12 77.0 49 71.4
CiPaw.16G113900 Carya illinoinensis HOM05D002136 ORTHO05D002145 2.3e-12 77.0 202 37.6
CsaV3_1G028840 Cucumis sativus L. HOM05D002136 ORTHO05D002145 2.3e-12 77.0 132 43.2
Gorai.009G055500 Gossypium raimondii HOM05D002136 ORTHO05D002145 2.3e-12 77.0 298 29.5
Solyc12g010120.2 Solanum lycopersicum HOM05D002136 ORTHO05D002145 2.3e-12 77.0 210 38.6
CSS0035282 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 4.0e-12 76.3 49 71.4
PSO339G5388 Papaver somniferum HOM05D002136 ORTHO05D002145 4.0e-12 76.3 96 46.9
Potri.006G185700 Populus trichocarpa HOM05D002136 ORTHO05D002145 4.0e-12 76.3 315 28.9
Cfa020837 Carpinus fangiana HOM05D002136 ORTHO05D002145 5.2e-12 75.9 236 34.3
Duzib168G2318 Durio zibethinus HOM05D002136 ORTHO05D002145 6.8e-12 75.5 313 34.5
CSS0036585 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 8.8e-12 75.1 49 71.4
AL8G34080 Arabidopsis lyrata HOM05D002136 ORTHO05D002145 1.2e-11 74.7 253 30.0
EL10Ac8g18853 Beta vulgaris HOM05D002136 ORTHO05D002145 2.0e-11 73.9 72 51.4
ATR0739G045 Amborella trichopoda HOM05D002136 ORTHO05D002145 3.4e-11 73.2 70 48.6
Sp6g19660 Schrenkiella parvula HOM05D002136 ORTHO05D002145 3.4e-11 73.2 248 31.9
Nn8g39864 Nelumbo nucifera HOM05D002136 ORTHO05D002145 4.4e-11 72.8 43 72.1
BcaB08g36161 Brassica carinata HOM05D002136 ORTHO05D002145 5.7e-11 72.4 247 29.1
Lj6g0008983 Lotus japonicus HOM05D002136 ORTHO05D002145 5.7e-11 72.4 333 28.2
BraA05t22884Z Brassica rapa HOM05D002136 ORTHO05D002145 9.8e-11 71.6 135 38.5
AT5G58000 Arabidopsis thaliana HOM05D002136 ORTHO05D002145 2.2e-10 70.5 248 30.2
AUR62043252 Chenopodium quinoa HOM05D002136 ORTHO05D002145 2.2e-10 70.5 41 75.6
CSS0000642 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 2.8e-10 70.1 44 72.7
Eucgr.C02575 Eucalyptus grandis HOM05D002136 ORTHO05D002145 6.3e-10 68.9 163 31.9
Aqoxy6G02864 Aquilegia oxysepala HOM05D002136 ORTHO05D002145 8.3e-10 68.6 273 26.4
A02p08060 Brassica napus HOM05D002136 ORTHO05D002145 8.3e-10 68.6 258 29.8
BraA02t05879Z Brassica rapa HOM05D002136 ORTHO05D002145 8.3e-10 68.6 258 29.8
Aa31LG3G13790 Aethionema arabicum HOM05D002136 ORTHO05D002145 1.1e-09 68.2 255 30.2
MELO3C010233.2 Cucumis melo HOM05D002136 ORTHO05D002145 1.1e-09 68.2 256 33.2
BraA10t43611Z Brassica rapa HOM05D002136 ORTHO05D002145 1.4e-09 67.8 179 33.5
Sed0008209 Sechium edule HOM05D002136 ORTHO05D002145 3.1e-09 66.6 249 30.5
A10p16180 Brassica napus HOM05D002136 ORTHO05D002145 4.1e-09 66.2 249 30.5
Lalb_Chr11g0072721 Lupinus albus HOM05D002136 ORTHO05D002145 4.1e-09 66.2 260 31.2
SalBow1G7188 Salvia bowleyana HOM05D002136 ORTHO05D002145 4.1e-09 66.2 80 46.2
THA.LOC104818119 Tarenaya hassleriana HOM05D002136 ORTHO05D002145 1.6e-08 64.3 74 45.9
ClCG06G012320 Citrullus lanatus HOM05D002136 ORTHO05D002145 5.9e-08 62.4 295 32.2
Zm00001eb177690 Zea mays HOM05D002136 ORTHO05D002145 1.0e-07 61.6 101 36.6
CDE05G2969 Ceratophyllum demersum HOM05D002136 ORTHO05D002145 1.3e-07 61.2 296 31.8
CDE02G0562 Ceratophyllum demersum HOM05D002136 ORTHO05D002145 2.9e-07 60.1 206 35.4
Nn1g06481 Nelumbo nucifera HOM05D002136 ORTHO05D002145 2.9e-07 60.1 82 41.5
Haze_19220 Corylus avellana HOM05D002136 ORTHO05D002145 3.8e-07 59.7 246 32.1
CiPaw.15G175400 Carya illinoinensis HOM05D002136 ORTHO05D002145 6.5e-07 58.9 96 37.5
CDE12G0918 Ceratophyllum demersum HOM05D002136 ORTHO05D002145 8.5e-07 58.5 176 31.8
BcaB05g22392 Brassica carinata HOM05D002136 ORTHO05D002145 1.1e-06 58.2 250 29.6
QL02p093024 Quercus lobata HOM05D002136 ORTHO05D002145 1.1e-06 58.2 45 57.8
AUR62039745 Chenopodium quinoa HOM05D002136 ORTHO05D002145 1.5e-06 57.8 253 27.7
unitig_748.g7199 Utricularia gibba HOM05D002136 ORTHO05D002145 1.9e-06 57.4 61 47.5
CSS0014039 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 3.2e-06 56.6 58 50.0
SGA_v2.0_scaffold206G41810 Striga asiatica HOM05D002136 ORTHO05D002145 5.5e-06 55.8 263 27.0
C02p13700 Brassica napus HOM05D002136 ORTHO05D002145 7.2e-06 55.5 263 27.8
BolC2t07489H Brassica oleracea HOM05D002136 ORTHO05D002145 7.2e-06 55.5 263 27.8


User provided reference genes

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