Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7P445T11 Lonicera japonica HOM05D025174 ORTHO05D012910 2.3e-74 282.0 127 100.0
Lj2P1198T31 Lonicera japonica HOM05D039584 ORTHO05D012910 7.9e-38 160.6 115 57.4
Lju682P1T12 Lonicera japonica HOM05D025174 ORTHO05D012910 7.6e-33 144.1 112 54.5
Lj4P763T2 Lonicera japonica HOM05D039584 ORTHO05D012910 6.7e-21 104.4 93 45.2
Atru.chr6.1397 Acer truncatum HOM05D000003 ORTHO05D000022 9.4e-15 84.0 102 40.2
Lj8P259T33 Lonicera japonica HOM05D064272 ORTHO05D012910 2.1e-14 82.8 106 34.9
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-13 79.7 101 39.6
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-13 78.6 100 40.0
Atru.chr2.971 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-12 77.0 116 35.3
Atru.chr4.661 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-12 77.0 104 38.5
vmacro01820 Vaccinium macrocarpon HOM05D001647 ORTHO05D001191 1.9e-12 76.3 95 34.7
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-12 75.5 102 36.3
Atru.chr2.2395 Acer truncatum HOM05D000003 ORTHO05D000022 4.3e-12 75.1 101 38.6
Atru.chr4.1025 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-12 75.1 98 37.8
Atru.chr1.2620 Acer truncatum HOM05D000003 ORTHO05D000004 5.7e-12 74.7 97 41.2
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 7.4e-12 74.3 94 35.1
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 7.4e-12 74.3 112 36.6
Atru.chr6.1145 Acer truncatum HOM05D000003 ORTHO05D012910 9.7e-12 73.9 104 40.4
Atru.chr6.2848 Acer truncatum HOM05D000003 ORTHO05D000022 9.7e-12 73.9 98 35.7
Atru.chr13.2390 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-11 73.6 93 37.6
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.3e-11 73.6 94 39.4
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 1.7e-11 73.2 94 37.2
Atru.chr1.1484 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-11 72.8 108 36.1
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 2.2e-11 72.8 96 39.6
Atru.chr4.1146 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-11 72.8 88 42.0
Atru.chr6.1028 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-11 72.4 97 36.1
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-11 72.4 95 40.0
Atru.chr12.1990 Acer truncatum HOM05D000003 ORTHO05D000004 3.7e-11 72.0 98 37.8
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 3.7e-11 72.0 95 35.8
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 3.7e-11 72.0 100 38.0
Atru.chr4.29 Acer truncatum HOM05D000003 ORTHO05D000022 4.8e-11 71.6 99 34.3
Aqoxy12s031 Aquilegia oxysepala HOM05D000003 ORTHO05D012910 4.8e-11 71.6 94 37.2
COL.COLO4_30893 Corchorus olitorius HOM05D000327 ORTHO05D000218 4.8e-11 71.6 89 41.6
Atru.chr2.1761 Acer truncatum HOM05D000003 ORTHO05D000004 6.3e-11 71.2 96 38.5
CSS0044635 Camellia sinensis var. sinensis HOM05D025174 ORTHO05D012910 6.3e-11 71.2 88 35.2
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 8.2e-11 70.9 100 38.0
Atru.chr8.1058 Acer truncatum HOM05D000003 ORTHO05D000004 8.2e-11 70.9 95 40.0
CSS0029848 Camellia sinensis var. sinensis HOM05D025174 ORTHO05D012910 8.2e-11 70.9 88 35.2
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 8.2e-11 70.9 94 36.2
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 8.2e-11 70.9 94 36.2
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 1.1e-10 70.5 110 31.8
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-10 70.1 98 36.7
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 1.4e-10 70.1 96 34.4
Atru.chr13.1905 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-10 69.3 101 36.6
CSS0014297 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.4e-10 69.3 77 36.4
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 3.1e-10 68.9 96 38.5
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 5.3e-10 68.2 94 36.2
Atru.chr13.1101 Acer truncatum HOM05D000003 ORTHO05D000022 5.3e-10 68.2 95 40.0
RcHm_v2.0_Chr2g0144631 Rosa chinensis HOM05D000003 ORTHO05D000022 5.3e-10 68.2 104 34.6
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 6.9e-10 67.8 94 37.2
COL.COLO4_36608 Corchorus olitorius HOM05D000003 ORTHO05D012910 6.9e-10 67.8 93 36.6
Atru.chr2.451 Acer truncatum HOM05D000003 ORTHO05D000004 9.1e-10 67.4 98 34.7
Actinidia07755 Actinidia chinensis HOM05D000003 ORTHO05D012910 9.1e-10 67.4 97 38.1
FvH4_6g46881 Fragaria vesca HOM05D000003 ORTHO05D000022 1.5e-09 66.6 112 29.5
CSS0038037 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.6e-09 65.9 97 33.0
AUR62008390 Chenopodium quinoa HOM05D000045 ORTHO05D013987 2.6e-09 65.9 101 34.7
RcHm_v2.0_Chr1g0382551 Rosa chinensis HOM05D000003 ORTHO05D000004 2.6e-09 65.9 95 33.7
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 5.9e-09 64.7 90 34.4
Atru.chr5.2276 Acer truncatum HOM05D000003 ORTHO05D000004 5.9e-09 64.7 90 40.0
Cc11_g12030 Coffea canephora HOM05D000003 ORTHO05D000004 5.9e-09 64.7 125 28.8
QL04p041207 Quercus lobata HOM05D000003 ORTHO05D000004 5.9e-09 64.7 119 29.4
SGA_v2.0_scaffold255G45431 Striga asiatica HOM05D021982 ORTHO05D012910 5.9e-09 64.7 78 37.2
Atru.chr13.1154 Acer truncatum HOM05D000003 ORTHO05D000004 7.7e-09 64.3 92 37.0
Atru.chr3.3019 Acer truncatum HOM05D000003 ORTHO05D000022 7.7e-09 64.3 102 37.3
COL.COLO4_21884 Corchorus olitorius HOM05D000003 ORTHO05D000004 7.7e-09 64.3 94 34.0
Atru.chr6.783 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-08 63.9 118 33.1
CSS0009370 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.0e-08 63.9 97 32.0
TPR.G22534 Trifolium pratense HOM05D000003 ORTHO05D000007 1.0e-08 63.9 112 29.5
Atru.chr1.1866 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-08 63.5 99 33.3
Atru.chr5.2238 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-08 63.2 90 35.6
Nn3g18384 Nelumbo nucifera HOM05D000003 ORTHO05D000004 2.9e-08 62.4 117 29.1
BcaC02g11021 Brassica carinata HOM05D000003 ORTHO05D000925 3.8e-08 62.0 114 26.3
QL03p072831 Quercus lobata HOM05D000003 ORTHO05D000004 3.8e-08 62.0 119 30.3
PSO017G3724 Papaver somniferum HOM05D000003 ORTHO05D000004 5.0e-08 61.6 95 33.7
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 6.5e-08 61.2 59 49.2
Atru.chr11.1461 Acer truncatum HOM05D000003 ORTHO05D000022 8.5e-08 60.8 96 34.4
Aqoxy4G01084 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.5e-08 60.8 97 32.0
BcaB01g01579 Brassica carinata HOM05D000003 ORTHO05D001498 8.5e-08 60.8 108 30.6
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 8.5e-08 60.8 95 30.5
Atru.chr2.2101 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-07 60.5 98 34.7
COL.COLO4_08472 Corchorus olitorius HOM05D000003 ORTHO05D000022 1.1e-07 60.5 101 32.7
COL.COLO4_10453 Corchorus olitorius HOM05D000003 ORTHO05D000022 1.1e-07 60.5 94 33.0
PSO067G0096 Papaver somniferum HOM05D000003 ORTHO05D000004 1.1e-07 60.5 101 31.7
Atru.chr12.1755 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-07 60.1 60 45.0
Atru.chr9.1174 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-07 60.1 116 32.8
EL10Ac5g10920 Beta vulgaris HOM05D000003 ORTHO05D012910 1.4e-07 60.1 105 30.5
Nn1g09365 Nelumbo nucifera HOM05D000003 ORTHO05D000004 1.4e-07 60.1 111 29.7
PSO478G4306 Papaver somniferum HOM05D000003 ORTHO05D000004 1.4e-07 60.1 96 31.2
BolC6t37477H Brassica oleracea HOM05D000003 ORTHO05D001498 1.9e-07 59.7 120 28.3
QL07p011071 Quercus lobata HOM05D000151 ORTHO05D000074 1.9e-07 59.7 106 34.0
PGSC0003DMG400014363 Solanum tuberosum HOM05D000003 ORTHO05D000004 1.9e-07 59.7 102 29.4
Atru.chr1.3365 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-07 59.3 94 34.0
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-07 59.3 72 40.3
Atru.chr7.949 Acer truncatum HOM05D000003 ORTHO05D000022 2.5e-07 59.3 102 34.3
Aqoxy4G01607 Aquilegia oxysepala HOM05D013665 ORTHO05D011148 2.5e-07 59.3 109 31.2
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.5e-07 59.3 63 36.5
CSS0048939 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.5e-07 59.3 69 36.2
COL.COLO4_22591 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.5e-07 59.3 108 26.9
Sopen02g033120 Solanum pennellii HOM05D000003 ORTHO05D000004 2.5e-07 59.3 96 34.4
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.2e-07 58.9 63 36.5
Lj2g0002183 Lotus japonicus HOM05D010643 ORTHO05D012910 3.2e-07 58.9 114 26.3
QL12p000462 Quercus lobata HOM05D001165 ORTHO05D001347 3.2e-07 58.9 103 34.0
Atru.chr4.136 Acer truncatum HOM05D000003 ORTHO05D000022 4.2e-07 58.5 95 35.8
Atru.chr5.2550 Acer truncatum HOM05D000003 ORTHO05D000004 4.2e-07 58.5 90 37.8
BcaB05g22054 Brassica carinata HOM05D000003 ORTHO05D001498 4.2e-07 58.5 105 30.5
PSO210G5611 Papaver somniferum HOM05D000003 ORTHO05D000006 4.2e-07 58.5 94 28.7
Psat1g083000 Pisum sativum HOM05D000003 ORTHO05D015733 4.2e-07 58.5 99 33.3
COL.COLO4_07368 Corchorus olitorius HOM05D000003 ORTHO05D000022 5.5e-07 58.2 107 29.9
FvH4_1g24182 Fragaria vesca HOM05D000003 ORTHO05D000004 5.5e-07 58.2 95 31.6
QL09p011339 Quercus lobata HOM05D000003 ORTHO05D000006 5.5e-07 58.2 119 31.1
THA.LOC104799794 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 5.5e-07 58.2 101 32.7
Ah.15g097350 Amaranthus hybridus HOM05D000003 ORTHO05D000004 9.4e-07 57.4 108 29.6
EL10Ac8g18961 Beta vulgaris HOM05D000327 ORTHO05D000218 9.4e-07 57.4 103 31.1
CSS0032702 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 9.4e-07 57.4 63 34.9
CSS0038564 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 9.4e-07 57.4 65 40.0
AUR62022035 Chenopodium quinoa HOM05D000022 ORTHO05D013985 1.2e-06 57.0 76 38.2
AUR62044423 Chenopodium quinoa HOM05D000022 ORTHO05D013985 1.2e-06 57.0 76 38.2
RcHm_v2.0_Chr6g0301391 Rosa chinensis HOM05D000003 ORTHO05D000004 1.2e-06 57.0 110 30.0
CANSAT25G1387 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 56.6 108 31.5
CANSAT25G3689 Cannabis sativa HOM05D000003 ORTHO05D000167 1.6e-06 56.6 108 31.5
RcHm_v2.0_Chr1g0384551 Rosa chinensis HOM05D000003 ORTHO05D000004 1.6e-06 56.6 108 29.6
PGSC0003DMG400024990 Solanum tuberosum HOM05D000003 ORTHO05D000004 1.6e-06 56.6 103 30.1
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 2.1e-06 56.2 111 27.9
Manes.13G092620 Manihot esculenta HOM05D000003 ORTHO05D000004 2.1e-06 56.2 113 32.7
Psat1g139400 Pisum sativum HOM05D009122 ORTHO05D012377 2.1e-06 56.2 95 35.8
QL06p022241 Quercus lobata HOM05D000200 ORTHO05D000262 2.1e-06 56.2 110 32.7
SGA_v2.0_scaffold130G34315 Striga asiatica HOM05D000003 ORTHO05D000004 2.1e-06 56.2 121 30.6
Aqoxy6G02329 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.7e-06 55.8 102 32.4
BcaC06g34670 Brassica carinata HOM05D000003 ORTHO05D000925 2.7e-06 55.8 99 31.3
FAN06G0503 Fragaria x ananassa HOM05D031998 ORTHO05D011148 2.7e-06 55.8 63 41.3
Os03g0643433 Oryza sativa ssp. japonica HOM05D000003 ORTHO05D000004 2.7e-06 55.8 111 28.8
QL04p017759 Quercus lobata HOM05D003550 ORTHO05D004336 2.7e-06 55.8 101 31.7
QL10p055856 Quercus lobata HOM05D000003 ORTHO05D000004 2.7e-06 55.8 125 28.8
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.7e-06 55.8 90 27.8
Ah.02g114890 Amaranthus hybridus HOM05D000003 ORTHO05D000004 3.6e-06 55.5 98 27.6
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 3.6e-06 55.5 54 42.6
QL10p023951 Quercus lobata HOM05D003769 ORTHO05D004521 3.6e-06 55.5 101 31.7
Aqoxy3G01491 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.7e-06 55.1 99 31.3
PSO782G4857 Papaver somniferum HOM05D000003 ORTHO05D001026 4.7e-06 55.1 102 33.3
QL09p000395 Quercus lobata HOM05D000003 ORTHO05D000004 4.7e-06 55.1 103 32.0
RcHm_v2.0_Chr5g0053531 Rosa chinensis HOM05D000003 ORTHO05D000004 4.7e-06 55.1 104 29.8
PGSC0003DMG400027303 Solanum tuberosum HOM05D000003 ORTHO05D000004 4.7e-06 55.1 103 32.0
TPR.G36225 Trifolium pratense HOM05D013665 ORTHO05D011148 4.7e-06 55.1 58 43.1
Aqoxy4G01023 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.1e-06 54.7 99 30.3
Aqoxy7G03157 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.1e-06 54.7 110 32.7
BcaB04g18843 Brassica carinata HOM05D000003 ORTHO05D001498 6.1e-06 54.7 59 42.4
AUR62037014 Chenopodium quinoa HOM05D000486 ORTHO05D000375 6.1e-06 54.7 90 28.9
MBI01_g39982_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 6.1e-06 54.7 104 30.8
MBI16_g10452_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D003186 6.1e-06 54.7 97 30.9
PSO210G5003 Papaver somniferum HOM05D000003 ORTHO05D000004 6.1e-06 54.7 104 32.7
QL09p031838 Quercus lobata HOM05D000003 ORTHO05D000004 6.1e-06 54.7 107 28.0
PGSC0003DMG400017390 Solanum tuberosum HOM05D005309 ORTHO05D006648 6.1e-06 54.7 87 32.2
Aa31LG9G5230 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.9e-06 54.3 92 32.6
Gorai.007G197300 Gossypium raimondii HOM05D057598 ORTHO05D017373 7.9e-06 54.3 68 33.8
PSO478G1836 Papaver somniferum HOM05D000003 ORTHO05D001026 7.9e-06 54.3 114 28.9
QL06p008495 Quercus lobata HOM05D008417 ORTHO05D010741 7.9e-06 54.3 98 29.6
Sed0020565 Sechium edule HOM05D000003 ORTHO05D000004 7.9e-06 54.3 117 28.2
PGSC0003DMG400013620 Solanum tuberosum HOM05D000003 ORTHO05D000004 7.9e-06 54.3 103 30.1


User provided reference genes

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