Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7E642T0 Lonicera japonica HOM05D005850 ORTHO05D007405 5.5e-71 270.8 129 100.0
CSS0015458 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 1.1e-47 193.4 96 91.7
Hma1.2p1_1968F.1_g309450 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 1.5e-47 193.0 96 92.7
Cc06_g09340 Coffea canephora HOM05D005850 ORTHO05D007405 2.5e-47 192.2 100 90.0
CSS0027687 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 3.2e-47 191.8 96 90.6
Hma1.2p1_1968F.1_g309460 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 5.5e-47 191.0 95 92.6
DCAR_028730 Daucus carota HOM05D005850 ORTHO05D007405 7.2e-47 190.7 98 88.8
CiPaw.03G235100 Carya illinoinensis HOM05D005850 ORTHO05D007405 1.4e-45 186.4 98 86.7
Dinv41576 Davidia involucrata HOM05D005850 ORTHO05D007405 1.4e-45 186.4 96 89.6
Actinidia20338 Actinidia chinensis HOM05D005850 ORTHO05D007405 4.0e-45 184.9 96 88.5
FvH4_1g05370 Fragaria vesca HOM05D005850 ORTHO05D007405 5.2e-45 184.5 96 85.4
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 5.2e-45 184.5 96 85.4
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 5.2e-45 184.5 96 85.4
Rhsim01G0091700 Rhododendron simsii HOM05D005850 ORTHO05D007405 8.8e-45 183.7 108 81.5
vmacro20668 Vaccinium macrocarpon HOM05D005850 ORTHO05D007405 8.8e-45 183.7 96 86.5
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.0e-44 182.6 96 84.4
GSVIVG01015433001 Vitis vinifera HOM05D005850 ORTHO05D007405 2.0e-44 182.6 96 86.5
RcHm_v2.0_Chr2g0091051 Rosa chinensis HOM05D005850 ORTHO05D007405 2.6e-44 182.2 96 84.4
Peaxi162Scf00560g00618 Petunia axillaris HOM05D005850 ORTHO05D007405 4.4e-44 181.4 98 84.7
FAN28G1812 Fragaria x ananassa HOM05D005850 ORTHO05D007405 5.7e-44 181.0 126 69.0
MD02G1062200 Malus domestica HOM05D005850 ORTHO05D007405 5.7e-44 181.0 96 84.4
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 7.5e-44 180.6 95 85.3
Atru.chr7.1296 Acer truncatum HOM05D005850 ORTHO05D007405 4.8e-43 177.9 126 68.3
Cfa003291 Carpinus fangiana HOM05D005850 ORTHO05D007405 4.8e-43 177.9 96 83.3
Haze_25681 Corylus avellana HOM05D002586 ORTHO05D007521 1.1e-42 176.8 95 85.3
Ciclev10008544m.g Citrus clementina HOM05D005850 ORTHO05D007405 1.8e-42 176.0 126 66.7
CsaV3_2G002440 Cucumis sativus L. HOM05D005850 ORTHO05D007405 3.1e-42 175.3 96 82.3
Nitab4.5_0004979g0100 Nicotiana tabacum HOM05D005850 ORTHO05D007405 4.1e-42 174.9 100 82.0
QL02p086096 Quercus lobata HOM05D005850 ORTHO05D007405 4.1e-42 174.9 96 80.2
CANSAT56G0565 Cannabis sativa HOM05D005850 ORTHO05D007405 5.3e-42 174.5 96 82.3
Glyma.12G008700 Glycine max HOM05D005850 ORTHO05D007405 5.3e-42 174.5 98 80.6
Prupe.7G227200 Prunus persica HOM05D005850 ORTHO05D007405 5.3e-42 174.5 96 82.3
Nitab4.5_0010299g0010 Nicotiana tabacum HOM05D005850 ORTHO05D007405 9.1e-42 173.7 100 82.0
PGR102G2365 Punica granatum HOM05D005850 ORTHO05D007405 9.1e-42 173.7 96 81.2
TWI32G0506 Tripterygium wilfordii HOM05D005850 ORTHO05D007405 1.6e-41 172.9 98 79.6
MELO3C004544.2 Cucumis melo HOM05D005850 ORTHO05D007405 2.0e-41 172.6 96 80.2
ClCG11G002620 Citrullus lanatus HOM05D005850 ORTHO05D007405 3.5e-41 171.8 96 80.2
PSO782G2614 Papaver somniferum HOM05D005850 ORTHO05D007405 3.5e-41 171.8 96 79.2
PSO063G4477 Papaver somniferum HOM05D005850 ORTHO05D007405 4.5e-41 171.4 96 79.2
Manes.16G069601 Manihot esculenta HOM05D005850 ORTHO05D007405 7.7e-41 170.6 96 80.2
Solyc04g049620.2 Solanum lycopersicum HOM05D005850 ORTHO05D007405 7.7e-41 170.6 98 79.6
Sopen04g019720 Solanum pennellii HOM05D005850 ORTHO05D007405 7.7e-41 170.6 98 79.6
Thecc.09G114700 Theobroma cacao HOM05D005850 ORTHO05D007405 7.7e-41 170.6 93 79.6
AUR62033402 Chenopodium quinoa HOM05D005850 ORTHO05D007405 1.3e-40 169.9 96 81.2
Sed0018565 Sechium edule HOM05D005850 ORTHO05D007405 1.3e-40 169.9 96 79.2
Eucgr.C04135 Eucalyptus grandis HOM05D005850 ORTHO05D007405 1.7e-40 169.5 94 80.9
Lalb_Chr19g0140271 Lupinus albus HOM05D005850 ORTHO05D007405 1.7e-40 169.5 96 79.2
Duzib168G1614 Durio zibethinus HOM05D005850 ORTHO05D007405 2.2e-40 169.1 139 60.4
Glyma.09G227900 Glycine max HOM05D005850 ORTHO05D007405 2.2e-40 169.1 96 79.2
Lj3g0026332 Lotus japonicus HOM05D005850 ORTHO05D007405 2.9e-40 168.7 96 79.2
Phvul.011G012400 Phaseolus vulgaris HOM05D005850 ORTHO05D007405 2.9e-40 168.7 97 76.3
VMungo1127G0399 Vigna mungo HOM05D005850 ORTHO05D007405 3.8e-40 168.3 96 79.2
HanXRQChr12g0355831 Helianthus annuus HOM05D005850 ORTHO05D007405 8.5e-40 167.2 100 81.0
Nn8g39265 Nelumbo nucifera HOM05D005850 ORTHO05D007405 8.5e-40 167.2 96 78.1
Hund09180 Selenicereus undatus HOM05D005850 ORTHO05D007405 8.5e-40 167.2 96 82.3
EL10Ac8g18542 Beta vulgaris HOM05D005850 ORTHO05D007405 1.5e-39 166.4 96 80.2
Aqoxy7G01830 Aquilegia oxysepala HOM05D005850 ORTHO05D007405 5.5e-39 164.5 96 77.1
Migut.J01174 Erythranthe guttata HOM05D005850 ORTHO05D007405 5.5e-39 164.5 95 76.8
Sabra18G0064500 Salix brachista HOM05D005850 ORTHO05D007405 9.4e-39 163.7 96 76.0
COL.COLO4_34934 Corchorus olitorius HOM05D005850 ORTHO05D007405 1.2e-38 163.3 96 75.0
THA.LOC104808745 Tarenaya hassleriana HOM05D005850 ORTHO05D007405 2.7e-38 162.2 108 73.1
ECA234G3981 Erigeron canadensis HOM05D005850 ORTHO05D007405 3.6e-38 161.8 96 81.2
Gohir.A06G060700 Gossypium hirsutum HOM05D005850 ORTHO05D007405 4.7e-38 161.4 96 76.0
Potri.018G076700 Populus trichocarpa HOM05D005850 ORTHO05D007405 2.3e-37 159.1 96 71.9
Gohir.D06G059100 Gossypium hirsutum HOM05D005850 ORTHO05D007405 4.0e-37 158.3 96 75.0
Aa31LG9G4350 Aethionema arabicum HOM05D005850 ORTHO05D007405 5.2e-37 157.9 96 76.0
Lsat_1_v5_gn_5_100240 Lactuca sativa HOM05D005850 ORTHO05D007405 5.2e-37 157.9 95 77.9
MBI01_g03369_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D007405 6.8e-37 157.5 94 74.5
Carub.0007s2916 Capsella rubella HOM05D005850 ORTHO05D007405 8.8e-37 157.1 108 71.3
Medtr0314s0030 Medicago truncatula HOM05D005850 ORTHO05D007405 1.2e-36 156.8 98 74.5
A04p08720 Brassica napus HOM05D005850 ORTHO05D007405 1.5e-36 156.4 96 76.0
TPR.G30190 Trifolium pratense HOM05D005850 ORTHO05D007405 2.0e-36 156.0 98 73.5
BcaC02g09427 Brassica carinata HOM05D005850 ORTHO05D007405 2.6e-36 155.6 96 76.0
C04p42500 Brassica napus HOM05D005850 ORTHO05D007405 2.6e-36 155.6 96 76.0
BolC4t25826H Brassica oleracea HOM05D005850 ORTHO05D007405 2.6e-36 155.6 96 76.0
BraA04t16569Z Brassica rapa HOM05D005850 ORTHO05D007405 2.6e-36 155.6 96 76.0
BcaB03g16095 Brassica carinata HOM05D005850 ORTHO05D007405 7.5e-36 154.1 96 75.0
Thhalv10025099m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 7.5e-36 154.1 108 68.5
Thhalv10025558m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 7.5e-36 154.1 108 68.5
arahy.Tifrunner.gnm1.ann1.JQ4W8U Arachis hypogaea HOM05D005850 ORTHO05D007405 9.8e-36 153.7 117 64.1
Sp7g10960 Schrenkiella parvula HOM05D005850 ORTHO05D007405 1.3e-35 153.3 96 75.0
arahy.Tifrunner.gnm1.ann1.2WTJ41 Arachis hypogaea HOM05D005850 ORTHO05D007405 1.7e-35 152.9 124 59.7
ATR0037G042 Amborella trichopoda HOM05D005850 ORTHO05D007405 2.2e-35 152.5 94 69.1
unitig_22.g6630 Utricularia gibba HOM05D005850 ORTHO05D007405 2.2e-35 152.5 93 74.2
AL9U10250 Arabidopsis lyrata HOM05D005850 ORTHO05D007405 2.8e-35 152.1 108 70.4
Gorai.010G068900 Gossypium raimondii HOM05D005850 ORTHO05D007405 2.8e-35 152.1 107 68.2
Psat0s3467g0080 Pisum sativum HOM05D005850 ORTHO05D007405 2.8e-35 152.1 96 74.0
Zm00001eb295310 Zea mays HOM05D005850 ORTHO05D007405 8.3e-35 150.6 93 69.9
Os05g0556000 Oryza sativa ssp. japonica HOM05D005850 ORTHO05D007405 1.2e-33 146.7 96 65.6
HPP92_003437 Vanilla planifolia HOM05D005850 ORTHO05D007405 5.9e-33 144.4 94 67.0
MSTRG.19610 Avicennia marina HOM05D005850 ORTHO05D007405 7.7e-33 144.1 96 67.7
CSS0006300 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 2.6e-28 129.0 88 70.5
SEGI_17149 Sequoiadendron giganteum HOM05D005850 ORTHO05D007405 6.3e-27 124.4 96 57.3
Zm00001eb343200 Zea mays HOM05D005850 ORTHO05D007405 9.2e-26 120.6 92 55.4
Ah.14g081400 Amaranthus hybridus HOM05D005850 ORTHO05D007405 5.9e-25 117.9 71 77.5
AT4G13400 Arabidopsis thaliana HOM05D005850 ORTHO05D007405 6.1e-22 107.8 68 75.0
Cpa.g.sc23.141 Carica papaya HOM05D005850 ORTHO05D007405 6.1e-22 107.8 63 76.2
TAR636G0790 Trochodendron aralioides HOM05D005850 ORTHO05D007405 2.0e-20 102.8 55 85.5
AUR62011029 Chenopodium quinoa HOM05D005850 ORTHO05D007405 9.8e-20 100.5 63 73.0
Pp3c8_16220 Physcomitrium patens HOM05D005850 ORTHO05D007405 4.9e-19 98.2 95 49.5
Mapoly0029s0010 Marchantia polymorpha HOM05D005850 ORTHO05D007405 3.6e-14 82.0 94 46.8
CBR_g37310 Chara braunii HOM05D005850 ORTHO05D007405 4.7e-14 81.6 73 47.9
Cre02.g104100 Chlamydomonas reinhardtii HOM05D005850 ORTHO05D007405 1.7e-11 73.2 89 42.7
SMO297G0022 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 2.2e-11 72.8 60 51.7
SMO266G0057 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 8.3e-11 70.9 56 51.8
Sc07g0007400 Simmondsia chinensis HOM05D005850 ORTHO05D007405 7.8e-09 64.3 33 84.8
SMO266G0037 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 1.3e-08 63.5 56 46.4
CDE05G0787 Ceratophyllum demersum HOM05D006802 ORTHO05D008507 2.3e-08 62.8 127 31.5
THA.LOC104801985 Tarenaya hassleriana HOM05D006802 ORTHO05D008507 2.3e-08 62.8 108 30.6
PSO782G1089 Papaver somniferum HOM05D005850 ORTHO05D007405 6.6e-08 61.2 30 86.7
AT3G63290 Arabidopsis thaliana HOM05D006802 ORTHO05D008507 8.6e-08 60.8 105 31.4
CARHR291660 Cardamine hirsuta HOM05D006802 ORTHO05D008507 1.1e-07 60.5 104 34.6
AL5G46150 Arabidopsis lyrata HOM05D006802 ORTHO05D008507 1.9e-07 59.7 115 29.6
Carub.0005s2995 Capsella rubella HOM05D006802 ORTHO05D008507 1.9e-07 59.7 114 29.8
PGSC0003DMG400019349 Solanum tuberosum HOM05D006802 ORTHO05D008507 1.9e-07 59.7 122 32.0
AagrBONN_evm.TU.Sc2ySwM_368.2173 Anthoceros agrestis HOM05D006802 ORTHO05D008507 2.5e-07 59.3 58 48.3
Sp5g00240 Schrenkiella parvula HOM05D006802 ORTHO05D008507 4.3e-07 58.5 145 26.9
Thhalv10006021m.g Eutrema salsugineum HOM05D006802 ORTHO05D008507 5.6e-07 58.2 113 30.1
Nitab4.5_0000678g0020 Nicotiana tabacum HOM05D006802 ORTHO05D008507 7.3e-07 57.8 122 32.0
vmacro14901 Vaccinium macrocarpon HOM05D006802 ORTHO05D008507 7.3e-07 57.8 119 30.3
Sopen09g027330 Solanum pennellii HOM05D006802 ORTHO05D008507 1.2e-06 57.0 122 31.1
C04p29940 Brassica napus HOM05D000738 ORTHO05D000675 2.1e-06 56.2 116 30.2
BolC4t24525H Brassica oleracea HOM05D006802 ORTHO05D000675 2.1e-06 56.2 116 30.2
Eucgr.K03337 Eucalyptus grandis HOM05D006802 ORTHO05D008507 2.1e-06 56.2 112 33.0
RcHm_v2.0_Chr6g0290231 Rosa chinensis HOM05D006802 ORTHO05D008507 2.1e-06 56.2 111 31.5
Solyc09g065580.4 Solanum lycopersicum HOM05D006802 ORTHO05D008507 2.8e-06 55.8 122 30.3
CSS0013542 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 3.6e-06 55.5 123 26.0
CSS0022180 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 3.6e-06 55.5 123 26.0
FvH4_2g23081 Fragaria vesca HOM05D006802 ORTHO05D008507 3.6e-06 55.5 111 31.5
Os10g0208500 Oryza sativa ssp. japonica HOM05D006802 ORTHO05D008507 4.7e-06 55.1 51 49.0
Ca_14665_v3 Cicer arietinum L. HOM05D005850 ORTHO05D007405 6.2e-06 54.7 33 75.8
Gorai.008G002600 Gossypium raimondii HOM05D006802 ORTHO05D008507 6.2e-06 54.7 115 28.7
Sabra02G0040100 Salix brachista HOM05D006802 ORTHO05D008507 6.2e-06 54.7 113 29.2
Cpa.g.sc52.110 Carica papaya HOM05D006802 ORTHO05D008507 8.1e-06 54.3 116 28.4


User provided reference genes

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