Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 5.8e-42 173.7 82 100.0
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 9.6e-21 103.2 82 61.0
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 2.0e-18 95.5 79 53.2
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 3.4e-18 94.7 75 52.0
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 5.8e-18 94.0 76 56.6
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 1.3e-17 92.8 76 55.3
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 1.7e-17 92.4 77 54.5
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 2.5e-16 88.6 77 51.9
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 3.2e-16 88.2 74 52.7
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 9.3e-16 86.7 88 45.5
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 9.3e-16 86.7 73 53.4
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 9.3e-16 86.7 74 51.4
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 1.6e-15 85.9 77 51.9
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 2.1e-15 85.5 76 47.4
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 2.7e-15 85.1 78 50.0
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 4.6e-15 84.3 76 47.4
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 4.6e-15 84.3 81 50.6
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 4.6e-15 84.3 76 48.7
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 6.0e-15 84.0 76 48.7
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 7.9e-15 83.6 78 50.0
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.0e-14 83.2 74 51.4
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 1.8e-14 82.4 77 51.9
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 5.1e-14 80.9 57 61.4
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 5.1e-14 80.9 75 48.0
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 8.7e-14 80.1 77 50.6
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 8.7e-14 80.1 77 50.6
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.1e-13 79.7 77 53.2
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.5e-13 79.3 77 45.5
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.9e-13 79.0 76 51.3
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 1.9e-13 79.0 75 50.7
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.5e-13 78.6 70 51.4
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 3.3e-13 78.2 74 47.3
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 3.3e-13 78.2 76 44.7
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 5.7e-13 77.4 74 50.0
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 5.7e-13 77.4 74 45.9
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 7.4e-13 77.0 68 45.6
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 7.4e-13 77.0 77 44.2
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 9.6e-13 76.6 91 44.0
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 1.6e-12 75.9 77 45.5
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 3.7e-12 74.7 79 44.3
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 4.8e-12 74.3 57 56.1
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 4.8e-12 74.3 77 42.9
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 8.2e-12 73.6 77 46.8
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 8.2e-12 73.6 58 55.2
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 1.1e-11 73.2 68 50.0
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.4e-11 72.8 77 42.9
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.4e-11 72.8 75 48.0
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.4e-11 72.8 79 46.8
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 1.8e-11 72.4 57 52.6
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 3.1e-11 71.6 73 46.6
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 3.1e-11 71.6 75 48.0
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 4.0e-11 71.2 77 42.9
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 5.3e-11 70.9 77 45.5
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 6.9e-11 70.5 60 53.3
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 6.9e-11 70.5 60 53.3
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 9.0e-11 70.1 58 58.6
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 1.5e-10 69.3 51 52.9
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.0e-10 68.9 80 41.2
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 2.0e-10 68.9 80 41.2
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.6e-10 68.6 74 41.9
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 4.5e-10 67.8 116 35.3
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 5.8e-10 67.4 75 44.0
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 5.8e-10 67.4 76 39.5
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 5.8e-10 67.4 70 41.4
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 5.8e-10 67.4 70 41.4
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 5.8e-10 67.4 68 45.6
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 7.6e-10 67.0 72 43.1
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 7.6e-10 67.0 64 45.3
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.0e-09 66.6 72 37.5
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 1.0e-09 66.6 77 40.3
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 1.0e-09 66.6 72 40.3
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 1.3e-09 66.2 84 40.5
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 1.3e-09 66.2 59 45.8
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 2.2e-09 65.5 74 41.9
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.8e-09 64.7 71 36.6
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 3.8e-09 64.7 62 43.5
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 5.0e-09 64.3 74 40.5
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 6.5e-09 63.9 72 40.3
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.1e-08 63.2 72 41.7
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 1.9e-08 62.4 74 43.2
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 2.5e-08 62.0 61 45.9
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 3.2e-08 61.6 66 42.4
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 3.2e-08 61.6 71 42.3
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 3.2e-08 61.6 62 48.4
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 3.2e-08 61.6 75 40.0
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 3.2e-08 61.6 59 40.7
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.2e-08 61.2 75 40.0
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 4.2e-08 61.2 74 39.2
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 7.1e-08 60.5 71 40.8
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 7.1e-08 60.5 88 31.8
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 7.1e-08 60.5 75 42.7
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 1.2e-07 59.7 74 37.8
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 1.2e-07 59.7 73 39.7
Peaxi162Scf00066g00424 Petunia axillaris HOM05D020480 ORTHO05D003486 1.2e-07 59.7 50 46.0
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.6e-07 59.3 71 40.8
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 1.6e-07 59.3 71 40.8
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 1.6e-07 59.3 72 45.8
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 1.6e-07 59.3 52 55.8
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.6e-07 59.3 60 45.0
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 1.6e-07 59.3 72 33.3
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 2.1e-07 58.9 68 39.7
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 2.1e-07 58.9 68 42.6
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 3.5e-07 58.2 66 39.4
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 3.5e-07 58.2 72 37.5
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 4.6e-07 57.8 73 38.4
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 4.6e-07 57.8 58 41.4
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 6.1e-07 57.4 58 37.9
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 7.9e-07 57.0 66 37.9
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 7.9e-07 57.0 53 50.9
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 7.9e-07 57.0 53 50.9
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 7.9e-07 57.0 56 48.2
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 1.0e-06 56.6 73 39.7
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 1.0e-06 56.6 73 37.0
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.0e-06 56.6 38 57.9
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.3e-06 56.2 66 39.4
Cc10_g13660 Coffea canephora HOM05D006236 ORTHO05D003486 1.3e-06 56.2 52 51.9
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 1.3e-06 56.2 87 34.5
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 1.8e-06 55.8 74 33.8
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 1.8e-06 55.8 74 33.8
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 1.8e-06 55.8 59 47.5
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 2.3e-06 55.5 73 37.0
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 3.0e-06 55.1 75 36.0
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 3.0e-06 55.1 53 45.3
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 3.0e-06 55.1 66 42.4
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 3.9e-06 54.7 78 34.6
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 3.9e-06 54.7 66 42.4
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 5.1e-06 54.3 75 38.7
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 5.1e-06 54.3 75 38.7
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 6.7e-06 53.9 68 39.7
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 6.7e-06 53.9 68 39.7
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 6.7e-06 53.9 68 39.7
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 6.7e-06 53.9 68 39.7
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 6.7e-06 53.9 68 39.7
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 6.7e-06 53.9 51 49.0
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 8.7e-06 53.5 71 33.8
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 8.7e-06 53.5 71 33.8
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 8.7e-06 53.5 71 33.8
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 8.7e-06 53.5 68 36.8


User provided reference genes

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