Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C712G4 Lonicera japonica HOM05D003461 ORTHO05D004386 0.0e+00 3033.0 1532 100.0
DCAR_006261 Daucus carota HOM05D003461 ORTHO05D004386 0.0e+00 2537.7 1515 84.3
Dinv35880 Davidia involucrata HOM05D003461 ORTHO05D004386 0.0e+00 2535.0 1507 84.1
Cc08_g08280 Coffea canephora HOM05D003461 ORTHO05D004386 0.0e+00 2495.3 1538 81.9
CSS0003133 Camellia sinensis var. sinensis HOM05D003461 ORTHO05D004386 0.0e+00 2476.8 1528 81.5
Dinv30215 Davidia involucrata HOM05D003461 ORTHO05D004386 0.0e+00 2473.4 1528 81.9
Sopen08g021790 Solanum pennellii HOM05D003461 ORTHO05D004386 0.0e+00 2459.5 1543 80.0
ECA240G1832 Erigeron canadensis HOM05D003461 ORTHO05D004386 0.0e+00 2457.6 1516 81.8
CAN.G21.14 Capsicum annuum HOM05D003461 ORTHO05D004386 0.0e+00 2451.4 1528 80.7
Atru.chr7.2323 Acer truncatum HOM05D003461 ORTHO05D004386 0.0e+00 2446.8 1529 80.3
TAR383G0906 Trochodendron aralioides HOM05D003461 ORTHO05D004386 0.0e+00 2431.8 1529 79.6
Manes.13G069700 Manihot esculenta HOM05D003461 ORTHO05D004386 0.0e+00 2419.0 1529 79.3
Ciclev10007226m.g Citrus clementina HOM05D003461 ORTHO05D004386 0.0e+00 2417.5 1509 80.3
Thecc.09G143900 Theobroma cacao HOM05D003461 ORTHO05D004386 0.0e+00 2412.1 1544 78.8
COL.COLO4_24068 Corchorus olitorius HOM05D003461 ORTHO05D004386 0.0e+00 2411.7 1516 79.9
Haze_21625 Corylus avellana HOM05D003461 ORTHO05D004386 0.0e+00 2411.3 1538 79.6
Migut.A00272 Erythranthe guttata HOM05D003461 ORTHO05D004386 0.0e+00 2401.7 1528 78.2
Lsat_1_v5_gn_5_45581 Lactuca sativa HOM05D003461 ORTHO05D004386 0.0e+00 2401.7 1539 80.0
RcHm_v2.0_Chr6g0312731 Rosa chinensis HOM05D003461 ORTHO05D004386 0.0e+00 2394.8 1530 79.0
SGA_v2.0_scaffold27G11498 Striga asiatica HOM05D003461 ORTHO05D004386 0.0e+00 2391.7 1520 78.9
Gorai.010G053900 Gossypium raimondii HOM05D003461 ORTHO05D004386 0.0e+00 2389.4 1530 78.4
Gohir.A06G048100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 2386.7 1535 78.2
Prupe.1G466400 Prunus persica HOM05D003461 ORTHO05D004386 0.0e+00 2381.3 1540 77.7
PGR044G2079 Punica granatum HOM05D003461 ORTHO05D004386 0.0e+00 2372.4 1529 77.9
TWI34G1710 Tripterygium wilfordii HOM05D003461 ORTHO05D004386 0.0e+00 2369.0 1529 77.6
MD08G1135800 Malus domestica HOM05D003461 ORTHO05D004386 0.0e+00 2366.3 1529 78.2
FAN27G2808 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 2365.9 1530 78.0
FAN15G0070 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 2365.1 1542 77.6
Rhsim07G0154200 Rhododendron simsii HOM05D003461 ORTHO05D004386 0.0e+00 2365.1 1655 74.0
FvH4_2g30180 Fragaria vesca HOM05D003461 ORTHO05D004386 0.0e+00 2363.2 1531 78.4
Duzib150G1527 Durio zibethinus HOM05D003461 ORTHO05D004386 0.0e+00 2362.4 1544 76.6
Nn2g11834 Nelumbo nucifera HOM05D003461 ORTHO05D004386 0.0e+00 2358.6 1531 77.1
FAN20G1067 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 2356.3 1530 77.7
Potri.018G034700 Populus trichocarpa HOM05D003461 ORTHO05D004386 0.0e+00 2354.3 1532 77.6
Gohir.A05G010700 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 2351.2 1529 77.7
Gorai.009G011800 Gossypium raimondii HOM05D003461 ORTHO05D004386 0.0e+00 2350.9 1529 77.4
GSVIVG01035727001 Vitis vinifera HOM05D003461 ORTHO05D004386 0.0e+00 2349.7 1546 77.0
Gohir.D05G011400 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 2348.9 1529 77.3
HanXRQChr08g0221141 Helianthus annuus HOM05D003461 ORTHO05D004386 0.0e+00 2333.5 1524 78.7
Aqoxy7G01835 Aquilegia oxysepala HOM05D003461 ORTHO05D004386 0.0e+00 2307.3 1529 75.3
Sc09g0008870 Simmondsia chinensis HOM05D003461 ORTHO05D004386 0.0e+00 2306.9 1545 75.1
THA.LOC104819890 Tarenaya hassleriana HOM05D003461 ORTHO05D004386 0.0e+00 2292.7 1531 75.6
CANSAT01G0438 Cannabis sativa HOM05D003461 ORTHO05D004386 0.0e+00 2286.5 1533 75.6
Phvul.001G055800 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 2286.1 1534 74.9
PSO063G5065 Papaver somniferum HOM05D003461 ORTHO05D004386 0.0e+00 2283.1 1530 75.2
Glyma.17G204000 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 2280.8 1534 74.8
PSO782G2185 Papaver somniferum HOM05D003461 ORTHO05D004386 0.0e+00 2278.8 1530 75.1
Eucgr.C02859 Eucalyptus grandis HOM05D003461 ORTHO05D004386 0.0e+00 2276.9 1539 73.9
unitig_747.g21880 Utricularia gibba HOM05D003461 ORTHO05D004386 0.0e+00 2276.5 1529 74.2
Lj5g0000879 Lotus japonicus HOM05D003461 ORTHO05D004386 0.0e+00 2275.0 1532 74.3
Sp4g05280 Schrenkiella parvula HOM05D003461 ORTHO05D004386 0.0e+00 2272.3 1529 75.0
BcaC02g08333 Brassica carinata HOM05D003461 ORTHO05D004386 0.0e+00 2267.3 1529 74.7
AL4G17260 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 0.0e+00 2265.7 1529 74.4
BcaB06g28084 Brassica carinata HOM05D003461 ORTHO05D004386 0.0e+00 2265.7 1529 74.4
Thhalv10000008m.g Eutrema salsugineum HOM05D003461 ORTHO05D004386 0.0e+00 2265.3 1529 74.5
Lalb_Chr11g0063991 Lupinus albus HOM05D003461 ORTHO05D004386 0.0e+00 2263.4 1532 74.0
Ah.12g063310 Amaranthus hybridus HOM05D003461 ORTHO05D004386 0.0e+00 2263.0 1551 73.2
A04p19870 Brassica napus HOM05D003461 ORTHO05D004386 0.0e+00 2262.3 1530 74.5
C04p55600 Brassica napus HOM05D003461 ORTHO05D004386 0.0e+00 2259.6 1531 74.7
Carub.0004s0545 Capsella rubella HOM05D003461 ORTHO05D004386 0.0e+00 2257.3 1529 74.5
Oeu019417.3 Olea europaea HOM05D003461 ORTHO05D004386 0.0e+00 2256.9 2008 60.9
BraA04t17575Z Brassica rapa HOM05D003461 ORTHO05D004386 0.0e+00 2255.7 1539 74.1
SalBow4G0560 Salvia bowleyana HOM05D003461 ORTHO05D004386 0.0e+00 2254.2 1689 68.9
BolC4t27084H Brassica oleracea HOM05D003461 ORTHO05D004386 0.0e+00 2250.7 1543 74.1
AUR62024833 Chenopodium quinoa HOM05D003461 ORTHO05D004386 0.0e+00 2249.2 1557 73.3
Medtr1g010300 Medicago truncatula HOM05D003461 ORTHO05D004386 0.0e+00 2245.7 1534 73.7
AT2G25660 Arabidopsis thaliana HOM05D003461 ORTHO05D004386 0.0e+00 2242.2 1529 74.0
Aa31sc76G80 Aethionema arabicum HOM05D003461 ORTHO05D004386 0.0e+00 2237.2 1529 73.8
Duzib168G0147 Durio zibethinus HOM05D003461 ORTHO05D004386 0.0e+00 2229.9 1516 74.8
arahy.Tifrunner.gnm1.ann1.3VS957 Arachis hypogaea HOM05D003461 ORTHO05D004386 0.0e+00 2216.8 1588 71.5
arahy.Tifrunner.gnm1.ann1.4R6GA4 Arachis hypogaea HOM05D003461 ORTHO05D004386 0.0e+00 2214.9 1535 73.3
Psat6g031040 Pisum sativum HOM05D003461 ORTHO05D004386 0.0e+00 2212.6 1537 73.4
TPR.G20094 Trifolium pratense HOM05D003461 ORTHO05D004386 0.0e+00 2208.7 1533 72.8
Sabra18G0035400 Salix brachista HOM05D003461 ORTHO05D004386 0.0e+00 2204.9 1461 76.8
EL10Ac2g02534 Beta vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 2197.9 1543 72.3
Actinidia15711 Actinidia chinensis HOM05D003461 ORTHO05D004386 0.0e+00 2195.6 1509 75.6
CARHR115590 Cardamine hirsuta HOM05D003461 ORTHO05D004386 0.0e+00 2194.9 1447 76.2
Cpa.g.sc91.7 Carica papaya HOM05D003461 ORTHO05D004386 0.0e+00 2190.6 1369 80.4
AUR62032384 Chenopodium quinoa HOM05D003461 ORTHO05D004386 0.0e+00 2185.2 1526 72.5
Sed0017351 Sechium edule HOM05D003461 ORTHO05D004386 0.0e+00 2184.5 1530 72.4
ClCG05G017220 Citrullus lanatus HOM05D003461 ORTHO05D004386 0.0e+00 2179.4 1530 72.4
MELO3C003666.2 Cucumis melo HOM05D003461 ORTHO05D004386 0.0e+00 2153.3 1561 70.3
CsaV3_3G046700 Cucumis sativus L. HOM05D003461 ORTHO05D004386 0.0e+00 2147.9 1554 70.0
FAN24G1347 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 2128.2 1926 60.7
Os01g0179400 Oryza sativa ssp. japonica HOM05D003461 ORTHO05D004386 0.0e+00 2062.3 1521 68.2
ATR0037G074 Amborella trichopoda HOM05D003461 ORTHO05D004386 0.0e+00 2060.4 1545 67.3
Zm00001eb122270 Zea mays HOM05D003461 ORTHO05D004386 0.0e+00 2038.1 1517 67.0
Glyma.06G073700 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 2023.4 1532 66.8
Glyma.04G072400 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 2015.7 1519 67.9
Nitab4.5_0009600g0030 Nicotiana tabacum HOM05D003461 ORTHO05D004386 0.0e+00 2001.9 1243 81.3
HPP92_015152 Vanilla planifolia HOM05D003461 ORTHO05D004386 0.0e+00 1987.6 1534 66.5
Lj1g0021913 Lotus japonicus HOM05D003461 ORTHO05D004386 0.0e+00 1986.8 1512 67.1
vmacro05447 Vaccinium macrocarpon HOM05D003461 ORTHO05D004386 0.0e+00 1976.4 1242 79.5
Medtr3g108080 Medicago truncatula HOM05D003461 ORTHO05D004386 0.0e+00 1952.2 1518 65.9
Solyc08g067860.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 0.0e+00 1950.3 1243 79.7
Gohir.D06G048050 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1924.8 1237 78.8
Psat5g027760 Pisum sativum HOM05D003461 ORTHO05D004386 0.0e+00 1896.3 1529 63.8
Hund28667 Selenicereus undatus HOM05D003461 ORTHO05D004386 0.0e+00 1882.8 1270 75.1
Hund28681 Selenicereus undatus HOM05D003461 ORTHO05D004386 0.0e+00 1882.8 1270 75.1
VMungo1309G1485 Vigna mungo HOM05D003461 ORTHO05D004386 0.0e+00 1749.6 1375 66.0
Ca_15696_v3 Cicer arietinum L. HOM05D003461 ORTHO05D004386 0.0e+00 1722.6 1481 60.9
VMungo0647G2469 Vigna mungo HOM05D003461 ORTHO05D004386 0.0e+00 1635.5 1108 74.1
Phvul.009G098100 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 1578.9 1242 64.8
Mapoly0004s0170 Marchantia polymorpha HOM05D003461 ORTHO05D004386 0.0e+00 1514.2 1534 52.7
Actinidia14640 Actinidia chinensis HOM05D003461 ORTHO05D004386 0.0e+00 1446.4 921 78.8
Pp3c4_150 Physcomitrium patens HOM05D003461 ORTHO05D004386 0.0e+00 1442.6 1569 50.5
MD15G1115200 Malus domestica HOM05D003461 ORTHO05D004386 0.0e+00 1430.2 941 77.5
CiPaw.07G217600 Carya illinoinensis HOM05D003461 ORTHO05D004386 0.0e+00 1394.4 855 82.8
Gohir.D06G048151 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1378.6 923 74.4
Nitab4.5_0000125g0130 Nicotiana tabacum HOM05D003461 ORTHO05D004386 0.0e+00 1359.4 991 71.9
Peaxi162Scf00105g01316 Petunia axillaris HOM05D003461 ORTHO05D004386 0.0e+00 1357.0 872 77.5
SMO347G0057 Selaginella moellendorffii HOM05D003461 ORTHO05D004386 0.0e+00 1349.3 1548 48.0
Glyma.14G129400 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1308.5 858 76.7
CBR_g20101 Chara braunii HOM05D003461 ORTHO05D004386 0.0e+00 1296.2 1624 46.1
TPR.G34693 Trifolium pratense HOM05D003461 ORTHO05D004386 0.0e+00 1282.7 1051 64.2
AagrBONN_evm.TU.Sc2ySwM_228.5632 Anthoceros agrestis HOM05D003461 ORTHO05D004386 0.0e+00 1218.4 1335 49.1
Actinidia14639 Actinidia chinensis HOM05D003461 ORTHO05D004386 2.6e-276 956.4 557 87.6
Glyma.14G129500 Glycine max HOM05D003461 ORTHO05D004386 7.0e-258 895.2 635 70.2
AUR62011223 Chenopodium quinoa HOM05D003461 ORTHO05D004386 3.6e-230 803.1 669 61.9
MD15G1115000 Malus domestica HOM05D003461 ORTHO05D004386 2.9e-227 793.5 580 68.8
SEGI_10354 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 1.1e-226 791.6 666 59.8
Nitab4.5_0000125g0120 Nicotiana tabacum HOM05D003461 ORTHO05D004386 9.6e-215 751.9 515 71.8
CDE07G1701 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 1.2e-209 734.9 513 69.8
SEGI_20580 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 3.8e-187 660.2 643 53.0
Peaxi162Scf00105g00133 Petunia axillaris HOM05D003461 ORTHO05D004386 2.3e-168 597.8 348 87.9
MCO11G459 Micromonas commoda HOM05D003461 ORTHO05D004386 5.5e-162 576.6 1081 34.2
HPP92_015178 Vanilla planifolia HOM05D003461 ORTHO05D004386 6.3e-158 563.1 634 48.9
TPR.G27605 Trifolium pratense HOM05D003461 ORTHO05D004386 9.2e-157 559.3 421 66.0
AL4G17180 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 1.7e-147 528.5 397 72.3
SEGI_09564 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 8.6e-147 526.2 485 55.9
CDE07G0137 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 4.1e-133 480.7 275 89.5
Solyc08g067870.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 3.5e-124 451.1 301 73.1
Nitab4.5_0009600g0020 Nicotiana tabacum HOM05D003461 ORTHO05D004386 1.3e-123 449.1 286 76.2
AL4G17190 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 5.3e-112 410.6 276 72.1
Peaxi162Scf00105g01315 Petunia axillaris HOM05D003461 ORTHO05D004386 9.6e-106 389.8 286 68.5
VMungo0647G2587 Vigna mungo HOM05D003461 ORTHO05D004386 2.5e-61 242.3 140 90.0
Zm00001eb088480 Zea mays HOM05D003461 ORTHO05D004386 1.1e-53 216.9 117 94.0
VMungo1309G0474 Vigna mungo HOM05D003461 ORTHO05D004386 4.0e-51 208.4 159 62.3
Zm00001eb305240 Zea mays HOM05D003461 ORTHO05D004386 4.2e-45 188.3 107 90.7
HPP92_015177 Vanilla planifolia HOM05D003461 ORTHO05D004386 1.5e-42 179.9 185 56.2
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 2.8e-41 175.6 119 73.9
Cre05.g243150 Chlamydomonas reinhardtii HOM05D003461 ORTHO05D004386 5.4e-40 171.4 676 24.1
MBI14_g07933_MAGBIO Magnolia biondii HOM05D001400 ORTHO05D001795 3.8e-38 165.2 107 72.9
Lsat_1_v5_gn_9_70541 Lactuca sativa HOM05D003461 ORTHO05D004386 8.6e-38 164.1 127 69.3
Lsat_1_v5_gn_4_41661 Lactuca sativa HOM05D003461 ORTHO05D004386 3.2e-32 145.6 98 77.6
Cfa013212 Carpinus fangiana HOM05D003461 ORTHO05D004386 2.7e-31 142.5 93 69.9
Gohir.D10G105800 Gossypium hirsutum HOM05D003461 ORTHO05D004386 4.6e-31 141.7 81 85.2
Gorai.013G159000 Gossypium raimondii HOM05D003461 ORTHO05D004386 7.8e-31 141.0 98 74.5
SEGI_12849 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 3.9e-30 138.7 96 75.0
Gohir.D13G142100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 6.6e-30 137.9 82 81.7
Lsat_1_v5_gn_9_53460 Lactuca sativa HOM05D003461 ORTHO05D004386 1.9e-29 136.3 98 77.6
Aqoxy7G02104 Aquilegia oxysepala HOM05D003461 ORTHO05D005897 1.2e-28 133.7 108 63.0
Hund03002 Selenicereus undatus HOM05D003461 ORTHO05D004386 1.1e-27 130.6 125 50.4
VMungo0647G0881 Vigna mungo HOM05D003461 ORTHO05D004386 1.4e-27 130.2 134 56.0
MBI03_g45443_MAGBIO Magnolia biondii HOM05D003461 ORTHO05D004386 4.0e-27 128.6 86 70.9
Gohir.D01G114000 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.5e-26 126.7 71 85.9
Hma1.2p1_0175F.1_g077280 Hydrangea macrophylla HOM05D003461 ORTHO05D004386 2.6e-26 125.9 60 98.3
VMungo0647G1896 Vigna mungo HOM05D003461 ORTHO05D004386 3.7e-25 122.1 113 53.1
Lsat_1_v5_gn_0_34461 Lactuca sativa HOM05D003461 ORTHO05D004386 2.4e-24 119.4 85 70.6
VMungo1127G1644 Vigna mungo HOM05D003461 ORTHO05D004386 2.1e-20 106.3 64 75.0
RcHm_v2.0_Chr1g0381071 Rosa chinensis HOM05D003461 ORTHO05D004386 6.2e-20 104.8 57 89.5
RcHm_v2.0_Chr4g0412921 Rosa chinensis HOM05D003461 ORTHO05D004386 4.0e-19 102.1 57 87.7
Cpa.g.sc91.8 Carica papaya HOM05D003461 ORTHO05D004386 1.3e-17 97.1 47 89.4
Lsat_1_v5_gn_9_113480 Lactuca sativa HOM05D003461 ORTHO05D004386 2.3e-14 86.3 49 89.8
Potri.006G246401 Populus trichocarpa HOM05D003461 ORTHO05D004386 3.0e-14 85.9 54 83.3
CiPaw.07G217500 Carya illinoinensis HOM05D003461 ORTHO05D004386 3.3e-13 82.4 46 71.7
Lsat_1_v5_gn_3_38460 Lactuca sativa HOM05D003461 ORTHO05D014082 3.3e-13 82.4 54 81.5
EL10Ac2g02535 Beta vulgaris HOM05D003461 ORTHO05D089362 4.7e-12 78.6 163 36.2
Sabra18G0035500 Salix brachista HOM05D003461 ORTHO05D004386 1.3e-09 70.5 65 50.8
Lsat_1_v5_gn_9_113440 Lactuca sativa HOM05D003461 ORTHO05D229147 6.6e-06 58.2 28 89.3


User provided reference genes

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