Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1778.5 870 100.0
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1370.1 868 76.0
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1354.0 868 75.3
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1352.8 869 76.6
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1344.7 868 75.1
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1343.6 868 74.7
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1343.2 868 75.1
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1330.1 875 74.7
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1322.0 871 72.7
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1322.0 868 73.8
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1317.0 870 73.6
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1317.0 871 72.3
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1316.6 868 72.9
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1312.0 880 72.5
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1311.2 868 72.7
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1307.4 871 72.4
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1307.4 870 72.4
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1306.2 868 72.1
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1306.2 867 72.4
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1304.7 871 72.4
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1303.9 868 72.7
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1303.1 869 72.7
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1300.0 870 72.4
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1299.6 870 72.0
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1297.3 869 72.5
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1293.1 870 71.5
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1288.1 870 71.6
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1286.6 869 71.7
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1286.2 868 71.2
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1285.0 871 71.2
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1280.8 868 71.2
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1280.4 868 70.6
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1279.2 868 70.6
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1274.6 868 71.3
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1271.1 871 71.0
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1270.8 871 70.8
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1269.6 867 70.7
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1267.7 871 70.7
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1263.8 870 70.6
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1263.4 879 70.0
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1261.1 868 70.2
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1260.4 872 70.6
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1260.4 867 70.4
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1255.4 872 69.6
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1252.7 871 69.6
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1251.9 870 69.5
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1251.5 870 69.4
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1250.7 870 70.8
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1250.0 870 69.3
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1250.0 867 69.1
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1249.6 868 70.5
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1249.6 871 69.3
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1248.0 867 69.0
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1246.9 869 70.0
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1245.3 867 69.6
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1245.0 869 69.2
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1245.0 867 70.8
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1244.6 868 69.0
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1244.2 868 69.7
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1243.4 872 69.0
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1240.3 869 69.6
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1239.9 827 72.2
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1239.2 868 69.8
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1236.5 865 69.1
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1233.0 868 68.2
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1231.9 889 67.5
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1229.2 871 68.4
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1228.8 870 69.2
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1219.1 860 68.6
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1216.1 890 66.9
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1213.0 871 68.2
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1212.2 882 67.1
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1209.5 868 67.5
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1202.6 868 66.5
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1200.3 872 67.3
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1184.9 868 66.4
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1184.5 868 66.4
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1181.8 872 65.8
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1181.4 868 65.8
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1180.2 872 65.7
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1178.7 867 66.8
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1177.9 872 65.7
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1174.8 872 65.6
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1174.5 865 66.5
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1164.4 872 65.4
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1160.2 873 65.3
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1160.2 874 64.5
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1155.6 871 64.5
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1142.9 869 64.1
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1114.8 853 63.8
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1092.4 745 71.7
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 0.0e+00 1084.7 870 60.8
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 1.8e-311 1072.4 860 61.9
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 1.2e-307 1059.7 692 72.4
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 3.7e-304 1048.1 646 76.6
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 1.3e-293 1013.1 862 61.0
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 5.2e-282 974.5 692 67.2
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 8.8e-282 973.8 864 53.8
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 2.2e-280 969.1 864 55.1
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 2.4e-279 965.7 871 54.4
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 2.8e-275 952.2 873 52.3
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 1.8e-202 710.3 755 47.4
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 4.5e-169 599.4 389 75.1
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 2.4e-154 550.4 477 58.1
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 2.6e-140 503.8 461 54.4
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 8.1e-118 429.1 363 60.1
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 1.2e-100 372.1 306 60.8
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 8.5e-75 286.2 204 67.2
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.0e-67 262.7 168 73.8
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 9.5e-50 203.0 162 63.6
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 4.4e-47 194.1 178 57.3
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 2.2e-46 191.8 199 53.8
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 3.1e-40 171.4 216 45.8
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 8.0e-33 146.7 112 66.1
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 6.8e-32 143.7 149 47.0
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 3.4e-31 141.4 85 78.8
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 8.9e-24 116.7 87 67.8
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 4.4e-23 114.4 69 76.8
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 7.5e-23 113.6 90 62.2
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.6e-20 105.9 81 61.7
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 5.1e-19 100.9 109 50.5
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.1e-13 83.2 328 25.9
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.2e-13 81.6 215 26.0
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 1.2e-12 79.7 288 25.0
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 7.8e-12 77.0 328 24.7
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 3.0e-11 75.1 95 42.1
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 3.3e-10 71.6 307 24.8
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 1.6e-09 69.3 299 24.1
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 2.1e-09 68.9 304 24.0
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 4.8e-09 67.8 239 24.3
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 8.1e-09 67.0 289 27.0
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.1e-08 66.6 309 23.6
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 1.8e-08 65.9 303 28.1
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 1.8e-08 65.9 64 48.4
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 5.3e-08 64.3 300 25.0
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 6.9e-08 63.9 83 45.8
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.0e-07 62.4 33 78.8
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.4e-07 61.6 177 28.8
Cre03.g145447 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 5.8e-07 60.8 213 23.5
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 3.8e-06 58.2 297 22.6
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 3.8e-06 58.2 296 23.6
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 4.9e-06 57.8 200 27.0
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 4.9e-06 57.8 349 21.5
CBR_g37950 Chara braunii HOM05D000019 ORTHO05D000002 6.4e-06 57.4 119 30.3
CBR_g36370 Chara braunii HOM05D008676 ORTHO05D010936 8.4e-06 57.0 70 42.9
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 8.4e-06 57.0 212 24.5


User provided reference genes

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