Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 0.0e+00 2069.7 1039 100.0
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 0.0e+00 1092.8 1071 56.0
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 0.0e+00 1086.2 1089 55.2
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 3.5e-293 1011.9 1085 53.1
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 8.1e-290 1000.7 1039 53.0
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 1.7e-287 993.0 1085 52.1
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 1.9e-286 989.6 1065 52.5
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 1.1e-283 980.3 1061 52.4
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 6.4e-279 964.5 1063 51.7
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 1.6e-277 959.9 1080 51.2
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 1.5e-272 943.3 1084 49.5
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 7.6e-272 941.0 1024 52.4
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 6.4e-271 937.9 1058 51.9
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 1.6e-269 933.3 1068 50.1
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 3.9e-268 928.7 1064 50.1
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 5.1e-268 928.3 1064 50.1
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.5e-267 926.8 1041 49.8
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 1.9e-267 926.4 1060 49.9
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 9.6e-267 924.1 1063 50.0
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 4.8e-266 921.8 1029 51.5
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 8.1e-266 921.0 990 51.9
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 2.6e-264 916.0 1075 49.5
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 1.2e-261 907.1 1016 51.9
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 7.9e-261 904.4 1024 51.1
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 1.8e-260 903.3 1004 50.8
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 3.9e-260 902.1 1001 50.3
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 2.5e-259 899.4 1075 48.4
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 6.2e-258 894.8 1077 47.7
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 1.4e-257 893.6 948 52.6
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 2.4e-257 892.9 851 56.3
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 4.0e-257 892.1 991 51.3
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 6.9e-257 891.3 1021 49.0
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 2.2e-255 886.3 1053 49.0
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 1.8e-252 876.7 965 50.6
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 8.7e-252 874.4 1073 47.1
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 1.5e-251 873.6 1020 48.4
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 1.5e-251 873.6 1033 48.7
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 3.7e-250 869.0 1030 48.5
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 1.8e-249 866.7 999 49.9
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 2.0e-248 863.2 1011 48.6
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 1.0e-247 860.9 987 48.3
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 1.6e-245 853.6 1015 48.0
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 2.1e-245 853.2 1006 47.7
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 1.3e-244 850.5 1008 47.6
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 3.3e-243 845.9 1003 47.5
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 3.4e-240 835.9 1016 47.0
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 7.7e-240 834.7 1079 45.4
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 7.2e-238 828.2 846 52.7
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 4.6e-237 825.5 1050 45.8
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 6.7e-236 821.6 968 49.5
Thecc.10G136000 Theobroma cacao HOM05D005395 ORTHO05D006352 6.5e-231 805.1 838 52.9
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 2.7e-229 799.7 849 51.4
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 3.9e-228 795.8 1018 45.3
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 1.5e-222 777.3 1021 45.5
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 2.5e-222 776.5 1029 45.6
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 1.1e-217 761.1 1057 44.0
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 1.4e-217 760.8 1059 43.0
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 2.3e-212 743.4 1013 44.5
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 1.8e-209 733.8 1029 44.4
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 5.7e-203 712.2 1041 43.6
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 4.9e-202 709.1 733 51.7
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 1.7e-199 700.7 882 46.4
Sc04g0005700 Simmondsia chinensis HOM05D005395 ORTHO05D006352 2.3e-199 700.3 859 45.6
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 1.7e-191 674.1 1078 39.8
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 4.0e-188 662.9 1013 43.1
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 1.5e-174 617.8 977 40.0
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 2.5e-174 617.1 893 41.4
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 3.3e-174 616.7 914 41.4
AUR62014136 Chenopodium quinoa HOM05D005395 ORTHO05D006352 5.6e-174 615.9 1017 38.3
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 2.8e-173 613.6 977 39.8
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 4.0e-172 609.8 1015 39.0
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 2.0e-171 607.4 974 39.4
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 4.4e-171 606.3 888 41.1
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 7.6e-171 605.5 886 40.6
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 1.4e-169 601.3 889 41.4
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 1.4e-164 584.7 586 54.6
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 9.3e-161 572.0 1011 36.5
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 1.6e-157 561.2 684 49.1
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 1.3e-143 515.0 822 40.1
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 2.6e-139 500.7 683 45.8
vmacro19894 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 6.0e-136 489.6 477 55.8
Hma1.2p1_0293F.1_g116170 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 2.6e-131 474.2 364 66.8
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 7.6e-131 472.6 775 38.2
Mapoly0009s0015 Marchantia polymorpha HOM05D005395 ORTHO05D006352 1.6e-128 464.9 1117 31.8
AagrBONN_evm.TU.Sc2ySwM_344.2351 Anthoceros agrestis HOM05D005395 ORTHO05D006352 8.5e-122 442.6 750 36.8
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 1.4e-116 425.2 367 59.9
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 1.4e-116 425.2 377 58.4
SHI19147 Sapria himalayana HOM05D005395 ORTHO05D006352 4.2e-113 413.7 647 40.6
Pp3c1_42700 Physcomitrium patens HOM05D005395 ORTHO05D006352 5.5e-113 413.3 1133 29.8
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 2.0e-110 404.8 370 57.6
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 2.2e-109 401.4 369 57.2
Lalb_Chr13g0291141 Lupinus albus HOM05D005395 ORTHO05D006352 3.5e-107 394.0 395 52.4
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 2.6e-94 351.3 318 56.6
QL05p050737 Quercus lobata HOM05D005395 ORTHO05D006352 4.5e-91 340.5 390 50.5
ATR0681G222 Amborella trichopoda HOM05D005395 ORTHO05D006352 1.5e-89 335.5 639 36.8
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 1.8e-76 292.0 288 53.1
SEGI_03843 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.1e-65 256.1 469 34.5
MCO03G604 Micromonas commoda HOM05D005395 ORTHO05D006352 2.8e-64 251.5 1063 24.8
SEGI_22370 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 2.2e-61 241.9 325 42.8
SEGI_30633 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 2.2e-61 241.9 325 42.8
Cpa.g.sc245.15 Carica papaya HOM05D005395 ORTHO05D006352 4.6e-59 234.2 257 50.6
Nitab4.5_0002179g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 2.3e-58 231.9 174 65.5
PSO384G3069 Papaver somniferum HOM05D005395 ORTHO05D006352 2.8e-56 224.9 248 46.8
Cfa026815 Carpinus fangiana HOM05D005395 ORTHO05D006352 3.6e-48 198.0 565 27.6
SEGI_09183 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 3.2e-44 184.9 230 43.0
CBR_g45714 Chara braunii HOM05D005395 ORTHO05D006352 5.6e-25 120.9 357 28.0
CDE07G1503 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 1.6e-24 119.4 147 45.6
CBR_g45710 Chara braunii HOM05D005395 ORTHO05D006352 2.8e-24 118.6 183 41.0
Cre04.g213652 Chlamydomonas reinhardtii HOM05D005395 ORTHO05D006352 6.2e-24 117.5 181 42.0
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 9.3e-20 103.6 82 64.6
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 9.7e-17 93.6 222 33.8
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 2.2e-16 92.4 82 59.8
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 2.8e-16 92.0 82 59.8
PSO384G2197 Papaver somniferum HOM05D005395 ORTHO05D006352 2.0e-14 85.9 85 48.2
CSS0042886 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 2.2e-13 82.4 82 54.9
Nitab4.5_0002179g0020 Nicotiana tabacum HOM05D005395 ORTHO05D006352 2.9e-13 82.0 75 53.3
Aa31sc690G30 Aethionema arabicum HOM05D005395 ORTHO05D006352 4.2e-12 78.2 80 47.5
Dinv18440 Davidia involucrata HOM05D005395 ORTHO05D006352 5.1e-10 71.2 51 62.7
QL02p026296 Quercus lobata HOM05D005395 ORTHO05D006352 1.5e-09 69.7 70 45.7
CDE07G0311 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 7.4e-09 67.4 69 50.7
Hma1.2p1_0293F.1_g116180 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 5.3e-07 61.2 122 40.2


User provided reference genes

Program Settings