Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 5.1e-204 714.1 353 100.0
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 2.0e-144 516.2 364 69.2
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 4.6e-144 515.0 362 71.5
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 1.3e-143 513.5 368 69.6
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 2.3e-143 512.7 370 68.9
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 2.3e-143 512.7 367 70.6
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 3.0e-143 512.3 370 69.7
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 1.5e-142 510.0 369 68.3
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.6e-141 506.5 371 69.5
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 3.6e-141 505.4 375 66.7
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 6.2e-141 504.6 364 69.5
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 1.1e-140 503.8 369 69.1
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 8.9e-140 500.7 370 68.6
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 4.4e-139 498.4 359 68.8
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 4.4e-139 498.4 369 67.2
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 7.5e-139 497.7 370 68.9
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 7.5e-139 497.7 370 68.1
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.7e-138 496.5 371 66.6
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 2.9e-138 495.7 369 68.0
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 2.9e-138 495.7 370 66.8
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 3.7e-138 495.4 366 67.5
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 3.7e-138 495.4 372 67.2
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.1e-137 493.8 371 66.3
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 2.4e-137 492.7 371 65.8
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 7.1e-137 491.1 370 67.3
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.7e-136 489.2 370 67.0
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 4.6e-136 488.4 372 66.4
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 8.6e-135 484.2 370 64.9
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.9e-134 483.0 368 64.9
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 1.9e-134 483.0 370 67.3
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 2.5e-134 482.6 371 65.8
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 1.2e-133 480.3 368 64.7
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 2.1e-133 479.6 368 66.0
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 3.6e-133 478.8 368 64.7
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 4.7e-133 478.4 368 66.6
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.4e-132 476.9 369 64.8
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 5.2e-132 474.9 357 67.5
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 8.9e-132 474.2 368 65.2
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 8.9e-132 474.2 361 65.1
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 2.0e-131 473.0 369 65.0
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 7.6e-131 471.1 368 64.7
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 7.6e-131 471.1 358 65.4
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 7.6e-131 471.1 363 63.9
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 4.9e-130 468.4 363 66.1
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.9e-129 466.5 367 65.1
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.9e-129 466.5 367 65.1
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 7.1e-129 464.5 370 61.9
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 2.7e-128 462.6 368 64.1
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 6.0e-128 461.5 336 69.0
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 1.7e-127 459.9 370 61.9
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 1.7e-127 459.9 368 65.2
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 2.3e-127 459.5 360 65.3
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 3.0e-127 459.1 369 64.2
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 6.6e-127 458.0 367 63.8
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.5e-126 456.8 362 63.8
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 4.3e-126 455.3 359 66.3
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 7.3e-126 454.5 364 63.7
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 1.6e-125 453.4 362 62.7
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 1.6e-125 453.4 360 62.5
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 3.6e-125 452.2 345 66.4
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 3.6e-125 452.2 396 60.6
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 1.8e-124 449.9 412 58.7
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 5.2e-124 448.4 362 62.4
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 1.7e-122 443.4 351 65.0
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 1.7e-122 443.4 372 60.2
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 8.4e-122 441.0 364 61.3
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 1.4e-121 440.3 364 61.3
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 2.4e-121 439.5 365 64.7
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 5.4e-121 438.3 355 63.4
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.6e-120 436.8 338 65.4
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 1.7e-119 433.3 356 62.6
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 3.9e-119 432.2 370 60.3
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 6.6e-119 431.4 343 65.9
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 6.6e-119 431.4 371 62.5
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 4.3e-118 428.7 373 59.2
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 4.3e-118 428.7 326 65.0
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.6e-117 426.8 374 59.1
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 3.6e-117 425.6 371 59.3
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 4.8e-117 425.2 370 58.4
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 4.8e-117 425.2 370 58.4
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 6.2e-117 424.9 374 58.8
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 8.1e-117 424.5 378 59.5
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.1e-116 424.1 384 58.9
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 1.8e-116 423.3 345 64.3
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 2.4e-116 422.9 373 59.0
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 1.5e-115 420.2 381 58.3
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 2.6e-115 419.5 369 58.8
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 2.6e-115 419.5 340 62.4
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 2.6e-115 419.5 373 57.9
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 3.4e-115 419.1 344 64.0
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 4.5e-115 418.7 370 57.6
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 5.8e-115 418.3 374 58.6
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 5.8e-115 418.3 370 57.8
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 5.8e-115 418.3 375 57.9
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 9.9e-115 417.5 321 64.2
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 4.9e-114 415.2 371 56.6
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 4.2e-113 412.1 329 64.4
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 9.3e-113 411.0 370 58.6
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 4.6e-112 408.7 326 63.8
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 1.8e-111 406.8 370 56.8
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 8.7e-111 404.4 344 62.8
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 4.3e-110 402.1 370 53.5
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 5.6e-110 401.7 370 54.9
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 6.2e-109 398.3 370 52.7
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 8.1e-109 397.9 353 59.5
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 1.4e-108 397.1 371 53.9
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 3.1e-108 396.0 368 57.6
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 3.1e-108 396.0 303 66.7
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 7.6e-107 391.3 368 53.5
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 7.6e-107 391.3 319 63.0
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 1.4e-105 387.1 350 56.3
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 4.6e-104 382.1 392 51.5
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 1.3e-103 380.6 358 58.9
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 5.1e-103 378.6 380 51.1
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 2.4e-100 369.8 346 54.9
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 1.5e-99 367.1 376 51.9
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 2.6e-99 366.3 335 56.4
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 2.2e-98 363.2 332 57.5
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 8.7e-95 351.3 300 58.7
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 8.2e-93 344.7 285 64.6
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.1e-92 344.4 374 51.9
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 6.5e-90 335.1 366 48.1
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 4.2e-81 305.8 342 46.8
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 1.2e-80 304.3 462 41.8
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 4.4e-78 295.8 295 55.3
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 9.7e-78 294.7 273 59.3
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 3.1e-76 289.7 411 39.4
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.6e-75 286.6 287 56.4
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 3.0e-71 273.1 369 39.8
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.1e-70 271.2 241 60.2
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.7e-69 267.3 374 40.6
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 2.2e-69 266.9 216 61.6
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 1.1e-65 254.6 259 55.6
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 4.1e-60 236.1 233 53.6
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 4.1e-60 236.1 191 60.2
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 5.9e-59 232.3 238 52.9
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 2.9e-58 229.9 260 46.9
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.5e-57 227.6 243 54.3
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 2.2e-53 213.8 324 37.7
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 3.7e-53 213.0 227 55.1
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.1e-52 211.5 366 35.0
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 3.4e-46 189.9 151 62.9
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 2.8e-45 186.8 139 63.3
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.1e-44 183.0 115 73.9
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 8.3e-29 132.1 415 24.6
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 4.1e-28 129.8 74 79.7
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.3e-26 124.0 149 50.3
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 6.8e-23 112.5 207 30.9
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 3.3e-17 93.6 120 43.3
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 5.6e-17 92.8 73 64.4
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 9.9e-14 82.0 42 90.5
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 9.9e-14 82.0 51 76.5
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 3.0e-10 70.5 55 61.8
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 2.1e-08 64.3 79 48.1
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 6.2e-08 62.8 59 54.2


User provided reference genes

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