Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 0.0e+00 1819.3 936 100.0
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 1324.7 1009 72.0
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 1307.7 1005 70.2
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1307.0 989 73.3
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 1307.0 1008 70.8
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1305.8 1012 71.5
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 1303.9 1014 71.0
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 1302.3 1008 70.6
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1302.3 1013 70.3
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 1300.0 1001 71.6
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1299.3 1006 71.2
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1290.8 1008 70.6
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1288.1 1008 70.3
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1287.7 1001 70.3
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1283.9 1082 67.3
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1281.9 1010 69.5
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 1281.5 987 70.1
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 1281.2 1007 70.4
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 0.0e+00 1280.4 984 71.3
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1273.1 991 69.8
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1273.1 991 69.8
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1271.9 1006 69.7
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1267.3 997 69.8
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 1263.8 1004 69.1
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1263.8 1004 69.1
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1261.9 895 76.2
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 0.0e+00 1260.0 1032 68.2
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 1255.4 1006 69.2
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1252.7 1008 69.2
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1250.0 1038 66.7
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1248.8 1010 69.1
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 0.0e+00 1247.6 1007 68.9
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1246.9 1005 68.1
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1245.7 1010 68.8
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1244.2 1019 68.4
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1243.0 1008 68.8
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1243.0 1005 67.9
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 1240.7 1008 68.4
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 1239.9 986 68.6
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 0.0e+00 1238.8 1015 68.4
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1238.4 1009 68.2
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1235.7 1001 68.6
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 1232.2 1006 67.0
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1231.5 1009 67.3
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1231.1 999 68.5
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1229.9 990 67.8
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1228.8 1049 65.6
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1228.8 1010 66.8
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1228.8 1004 67.7
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 0.0e+00 1226.1 1218 58.6
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 0.0e+00 1224.2 1013 67.3
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1219.5 984 67.7
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1216.4 1013 66.7
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1214.1 1011 66.6
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1213.7 996 66.0
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1213.0 1007 66.7
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1212.6 1009 66.5
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1212.2 1007 66.6
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1205.7 986 66.6
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1203.7 1005 66.8
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1203.3 1005 66.6
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1200.3 1017 66.4
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1199.9 1019 65.0
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 0.0e+00 1198.0 984 67.0
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1197.2 1006 65.7
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1196.4 1006 65.5
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1189.9 981 66.2
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1187.6 1039 64.4
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 0.0e+00 1176.8 1015 66.2
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1176.8 978 65.6
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 1176.0 1017 65.8
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1168.7 976 64.5
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1168.3 1017 65.5
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 0.0e+00 1165.6 1008 65.2
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1165.2 976 64.4
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 0.0e+00 1164.8 1006 64.9
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1163.7 1018 65.2
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1160.6 977 64.3
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1158.7 982 64.6
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1152.5 998 63.0
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1150.6 986 64.0
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1149.8 994 63.2
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1147.5 985 63.8
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 0.0e+00 1147.1 1009 62.9
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 0.0e+00 1146.3 1147 57.8
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 0.0e+00 1140.9 977 65.9
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1136.3 980 63.7
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1130.9 1007 65.1
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1105.9 832 71.8
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1102.0 1010 60.5
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 0.0e+00 1095.1 1009 61.6
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1092.4 986 62.8
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1085.1 965 62.1
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 0.0e+00 1077.0 891 65.3
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 6.4e-312 1073.9 982 61.4
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 3.2e-311 1071.6 855 69.0
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 4.1e-309 1064.7 853 68.0
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 2.9e-307 1058.5 1038 57.6
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 3.5e-300 1035.0 990 59.0
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 2.3e-299 1032.3 963 59.6
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 8.6e-299 1030.4 966 59.2
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 1.6e-297 1026.2 1006 58.4
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 1.5e-290 1003.0 963 57.8
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 5.4e-285 984.6 774 69.1
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 1.3e-283 979.9 1004 56.6
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 3.0e-283 978.8 949 58.9
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 2.1e-281 972.6 965 56.6
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 1.1e-280 970.3 928 58.0
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 1.1e-280 970.3 928 58.0
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 2.9e-278 962.2 922 58.7
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 4.9e-278 961.4 915 58.8
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 1.4e-277 959.9 921 58.6
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 2.3e-275 952.6 953 56.0
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 5.8e-263 911.4 769 64.9
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 7.1e-261 904.4 1038 52.5
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 2.9e-246 855.9 1090 49.4
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 4.5e-231 805.4 576 73.4
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 1.1e-226 790.8 543 76.4
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 2.0e-223 780.0 629 67.7
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 1.0e-222 777.7 1041 47.6
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 4.4e-210 735.7 1014 46.3
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 4.8e-209 732.3 1018 45.6
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 7.0e-208 728.4 1050 45.3
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 1.5e-202 710.7 962 46.9
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 3.1e-200 703.0 590 63.9
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 4.7e-196 689.1 889 50.8
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 1.8e-187 660.6 545 64.8
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 7.8e-167 592.0 919 42.8
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 2.4e-155 553.9 543 60.4
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 4.2e-136 490.0 418 67.0
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 7.9e-127 459.1 363 67.2
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 3.8e-113 413.7 418 59.1
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 3.8e-113 413.7 422 59.7
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 5.7e-109 399.8 407 60.4
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 2.6e-93 347.8 320 62.8
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 2.7e-79 301.2 261 66.3
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 3.0e-70 271.2 218 71.6
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 4.0e-54 217.6 176 71.6
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 3.5e-50 204.5 278 47.8
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 3.0e-41 174.9 115 80.0
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 3.9e-41 174.5 199 53.8
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 3.2e-35 154.8 136 61.8
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 1.2e-26 126.3 130 53.1
TPR.G35745 Trifolium pratense HOM05D004002 ORTHO05D004668 2.8e-23 115.2 133 52.6
ECA240G3712 Erigeron canadensis HOM05D004002 ORTHO05D004668 6.4e-20 104.0 96 57.3
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 8.4e-20 103.6 60 78.3
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 3.2e-19 101.7 60 76.7
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 3.2e-19 101.7 60 76.7
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 1.2e-18 99.8 115 48.7
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 1.6e-18 99.4 60 75.0
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 2.1e-18 99.0 58 75.9
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 3.5e-18 98.2 97 58.8
Hund09269 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.8e-17 95.9 76 60.5
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 8.7e-17 93.6 72 73.6
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 4.8e-15 87.8 205 37.6
PSO541G4337 Papaver somniferum HOM05D004002 ORTHO05D004668 1.7e-12 79.3 79 58.2
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 1.7e-12 79.3 59 74.6
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 2.5e-08 65.5 32 96.9
HanXRQChr03g0064791 Helianthus annuus HOM05D004002 ORTHO05D004668 1.3e-07 63.2 48 66.7
Sp1g38940 Schrenkiella parvula HOM05D004002 ORTHO05D004668 1.8e-06 59.3 68 48.5


User provided reference genes

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