Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C347T10 Lonicera japonica HOM05D001090 ORTHO05D002687 4.7e-91 337.8 166 100.0
Lj7C349G17 Lonicera japonica HOM05D001090 ORTHO05D002687 2.2e-80 302.4 198 80.8
Actinidia15217 Actinidia chinensis HOM05D001090 ORTHO05D002687 3.2e-71 271.9 186 75.3
GSVIVG01008813001 Vitis vinifera HOM05D001090 ORTHO05D002687 1.0e-69 266.9 193 72.0
Cc10_g12680 Coffea canephora HOM05D001090 ORTHO05D002687 4.4e-65 251.5 184 69.6
Oeu051970.1 Olea europaea HOM05D001090 ORTHO05D002687 3.7e-64 248.4 178 71.3
MD00G1100600 Malus domestica HOM05D001090 ORTHO05D002687 1.4e-63 246.5 186 67.7
Potri.002G078000 Populus trichocarpa HOM05D001090 ORTHO05D002687 3.2e-63 245.4 180 69.4
vmacro05516 Vaccinium macrocarpon HOM05D001090 ORTHO05D002687 4.1e-63 245.0 186 65.6
Gohir.D03G069000 Gossypium hirsutum HOM05D001090 ORTHO05D002687 1.2e-62 243.4 185 65.9
SGA_v2.0_scaffold81G26138 Striga asiatica HOM05D001090 ORTHO05D002687 1.2e-62 243.4 166 71.1
MBI03_g28478_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D002687 1.6e-62 243.0 193 63.7
Nn1g08972 Nelumbo nucifera HOM05D001090 ORTHO05D002687 2.1e-62 242.7 184 66.8
Thecc.08G132400 Theobroma cacao HOM05D001090 ORTHO05D002687 2.1e-62 242.7 186 65.6
Gohir.A02G110100 Gossypium hirsutum HOM05D001090 ORTHO05D002687 2.7e-62 242.3 185 65.9
Sc10g0008070 Simmondsia chinensis HOM05D001090 ORTHO05D002687 4.6e-62 241.5 183 65.0
TAR628G0124 Trochodendron aralioides HOM05D001090 ORTHO05D002687 4.6e-62 241.5 186 66.1
Prupe.1G490400 Prunus persica HOM05D001090 ORTHO05D002687 7.8e-62 240.7 186 65.1
CiPaw.15G032300 Carya illinoinensis HOM05D001090 ORTHO05D002687 1.0e-61 240.4 182 67.0
FvH4_2g27750 Fragaria vesca HOM05D001090 ORTHO05D002687 1.0e-61 240.4 186 66.1
FAN20G0562 Fragaria x ananassa HOM05D001090 ORTHO05D002687 1.7e-61 239.6 186 65.6
RcHm_v2.0_Chr6g0296621 Rosa chinensis HOM05D001090 ORTHO05D002687 1.7e-61 239.6 186 65.1
FAN24G1236 Fragaria x ananassa HOM05D001090 ORTHO05D002687 2.3e-61 239.2 186 65.6
A08p28880 Brassica napus HOM05D001090 ORTHO05D002687 3.0e-61 238.8 186 62.4
FAN15G0022 Fragaria x ananassa HOM05D001090 ORTHO05D002687 3.0e-61 238.8 186 65.6
CANSAT21G2061 Cannabis sativa HOM05D001090 ORTHO05D002687 6.6e-61 237.7 183 65.0
TWI32G0149 Tripterygium wilfordii HOM05D001090 ORTHO05D002687 1.9e-60 236.1 185 65.4
ECA232G2805 Erigeron canadensis HOM05D001090 ORTHO05D002687 2.5e-60 235.7 185 63.8
BolC8t49734H Brassica oleracea HOM05D001090 ORTHO05D002687 4.3e-60 235.0 186 61.3
Ca_16604_v3 Cicer arietinum L. HOM05D001090 ORTHO05D002687 5.6e-60 234.6 179 65.9
Ciclev10000116m.g Citrus clementina HOM05D001090 ORTHO05D002687 7.3e-60 234.2 186 63.4
C08p20970 Brassica napus HOM05D001090 ORTHO05D002687 9.6e-60 233.8 186 60.8
BraA08t34819Z Brassica rapa HOM05D001090 ORTHO05D002687 1.2e-59 233.4 178 62.9
Gorai.013G107400 Gossypium raimondii HOM05D001090 ORTHO05D002687 1.6e-59 233.0 215 56.7
Lj1g0001372 Lotus japonicus HOM05D001090 ORTHO05D002687 1.6e-59 233.0 179 65.4
Lalb_Chr08g0241141 Lupinus albus HOM05D001090 ORTHO05D002687 1.6e-59 233.0 177 65.5
Thhalv10006535m.g Eutrema salsugineum HOM05D001090 ORTHO05D002687 2.1e-59 232.6 186 61.3
PGR042G2877 Punica granatum HOM05D001090 ORTHO05D002687 2.1e-59 232.6 178 67.4
Aa31LG7G5620 Aethionema arabicum HOM05D001090 ORTHO05D002687 2.8e-59 232.3 178 63.5
MSTRG.24175 Avicennia marina HOM05D001090 ORTHO05D002687 2.8e-59 232.3 179 65.9
SalBow2G0524 Salvia bowleyana HOM05D001090 ORTHO05D002687 3.6e-59 231.9 191 64.4
Sp1g19170 Schrenkiella parvula HOM05D001090 ORTHO05D002687 3.6e-59 231.9 186 60.8
Carub.0001s2107 Capsella rubella HOM05D001090 ORTHO05D002687 4.7e-59 231.5 186 59.7
THA.LOC104812087 Tarenaya hassleriana HOM05D001090 ORTHO05D002687 4.7e-59 231.5 183 62.3
Peaxi162Scf01003g00003 Petunia axillaris HOM05D001090 ORTHO05D002687 6.2e-59 231.1 188 64.9
arahy.Tifrunner.gnm1.ann1.9Y6HC5 Arachis hypogaea HOM05D001090 ORTHO05D002687 1.1e-58 230.3 176 65.3
Psat5g085000 Pisum sativum HOM05D001090 ORTHO05D002687 1.1e-58 230.3 179 64.2
AL1G34790 Arabidopsis lyrata HOM05D001090 ORTHO05D002687 1.8e-58 229.6 178 62.4
arahy.Tifrunner.gnm1.ann1.V5YSST Arachis hypogaea HOM05D001090 ORTHO05D002687 1.8e-58 229.6 176 64.8
Nitab4.5_0002045g0110 Nicotiana tabacum HOM05D001090 ORTHO05D002687 1.8e-58 229.6 187 65.2
CARHR022000 Cardamine hirsuta HOM05D001090 ORTHO05D002687 2.4e-58 229.2 186 58.6
Sed0013290 Sechium edule HOM05D001090 ORTHO05D002687 2.4e-58 229.2 185 63.2
Eucgr.F03833 Eucalyptus grandis HOM05D001090 ORTHO05D002687 3.1e-58 228.8 178 65.7
PGSC0003DMG400006051 Solanum tuberosum HOM05D001090 ORTHO05D002687 3.1e-58 228.8 187 64.7
Aqoxy6G00322 Aquilegia oxysepala HOM05D001090 ORTHO05D002687 5.2e-58 228.0 178 65.2
Lsat_1_v5_gn_4_134081 Lactuca sativa HOM05D001090 ORTHO05D002687 2.0e-57 226.1 189 63.5
VMungo1309G1000 Vigna mungo HOM05D001090 ORTHO05D002687 2.0e-57 226.1 162 67.3
Manes.02G167501 Manihot esculenta HOM05D001090 ORTHO05D002687 2.6e-57 225.7 177 65.5
SGA_v2.0_scaffold28G11973 Striga asiatica HOM05D001090 ORTHO05D002687 3.4e-57 225.3 181 63.0
AT1G21650 Arabidopsis thaliana HOM05D001090 ORTHO05D002687 4.4e-57 224.9 186 59.7
HanXRQChr09g0260691 Helianthus annuus HOM05D001090 ORTHO05D002687 4.4e-57 224.9 187 62.0
CsaV3_4G006230 Cucumis sativus L. HOM05D001090 ORTHO05D002687 5.8e-57 224.6 184 62.5
CAN.G342.13 Capsicum annuum HOM05D001090 ORTHO05D002687 7.6e-57 224.2 179 65.4
Solyc11g005020.3 Solanum lycopersicum HOM05D001090 ORTHO05D002687 7.6e-57 224.2 185 63.8
Glyma.06G116900 Glycine max HOM05D001090 ORTHO05D002687 9.9e-57 223.8 178 62.4
Manes.02G167701 Manihot esculenta HOM05D001090 ORTHO05D002687 1.3e-56 223.4 177 64.4
MELO3C016326.2 Cucumis melo HOM05D001090 ORTHO05D002687 2.2e-56 222.6 184 62.0
Nitab4.5_0001168g0030 Nicotiana tabacum HOM05D001090 ORTHO05D002687 2.2e-56 222.6 216 57.4
Migut.N03263 Erythranthe guttata HOM05D001090 ORTHO05D002687 3.8e-56 221.9 171 66.1
PSO832G0312 Papaver somniferum HOM05D001090 ORTHO05D002687 3.8e-56 221.9 185 61.1
PSO764G0256 Papaver somniferum HOM05D001090 ORTHO05D002687 2.4e-55 219.2 185 60.0
Phvul.009G129400 Phaseolus vulgaris HOM05D001090 ORTHO05D002687 2.4e-55 219.2 178 60.7
Hma1.2p1_0014F.1_g010140 Hydrangea macrophylla HOM05D001090 ORTHO05D002687 4.2e-55 218.4 169 66.3
ClCG07G007660 Citrullus lanatus HOM05D001090 ORTHO05D002687 7.1e-55 217.6 184 60.3
unitig_22.g6741 Utricularia gibba HOM05D001090 ORTHO05D002687 7.8e-54 214.2 179 61.5
AUR62007722 Chenopodium quinoa HOM05D001090 ORTHO05D002687 1.5e-52 209.9 184 57.6
Os11g0195100 Oryza sativa ssp. japonica HOM05D001090 ORTHO05D002687 1.5e-52 209.9 177 58.2
EL10Ac1g01340 Beta vulgaris HOM05D001090 ORTHO05D002687 4.3e-52 208.4 181 60.2
TPR.G13471 Trifolium pratense HOM05D001090 ORTHO05D002687 7.3e-52 207.6 160 65.0
ATR0584G059 Amborella trichopoda HOM05D001090 ORTHO05D002687 6.2e-51 204.5 185 53.5
Medtr3g088555 Medicago truncatula HOM05D001090 ORTHO05D002687 3.1e-50 202.2 157 64.3
Zm00001eb090990 Zea mays HOM05D001090 ORTHO05D002687 2.6e-49 199.1 177 55.9
CSS0001559 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D002687 8.1e-43 177.6 108 78.7
QL09p032695 Quercus lobata HOM05D001090 ORTHO05D002687 1.7e-40 169.9 114 72.8
Sabra02G0061200 Salix brachista HOM05D001090 ORTHO05D002687 2.4e-39 166.0 103 76.7
COL.COLO4_09042 Corchorus olitorius HOM05D001090 ORTHO05D002687 1.2e-38 163.7 142 58.5
Duzib093G1991 Durio zibethinus HOM05D001090 ORTHO05D002687 9.6e-36 154.1 108 68.5
FAN27G1391 Fragaria x ananassa HOM05D001090 ORTHO05D002687 1.3e-35 153.7 108 67.6
Mapoly0073s0063 Marchantia polymorpha HOM05D001090 ORTHO05D002687 3.4e-33 145.6 167 45.5
CSS0005695 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D002687 5.8e-33 144.8 91 78.0
AagrBONN_evm.TU.Sc2ySwM_362.1596 Anthoceros agrestis HOM05D001090 ORTHO05D002687 1.0e-32 144.1 170 44.7
AUR62013420 Chenopodium quinoa HOM05D001090 ORTHO05D002687 1.8e-29 133.3 108 57.4
Pp3c27_7170 Physcomitrium patens HOM05D001090 ORTHO05D002687 1.6e-27 126.7 158 42.4
Hund17700 Selenicereus undatus HOM05D001090 ORTHO05D002687 4.8e-27 125.2 100 59.0
Hund26778 Selenicereus undatus HOM05D001090 ORTHO05D002687 4.8e-27 125.2 100 59.0
SEGI_04791 Sequoiadendron giganteum HOM05D001090 ORTHO05D002687 1.9e-23 113.2 108 47.2
CSS0022044 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D002687 1.8e-21 106.7 67 77.6
Cpa.g.sc64.147 Carica papaya HOM05D001090 ORTHO05D002687 3.7e-19 99.0 53 86.8
Cfa018122 Carpinus fangiana HOM05D001090 ORTHO05D002687 4.8e-19 98.6 65 67.7
CDE08G1456 Ceratophyllum demersum HOM05D004319 ORTHO05D002687 5.3e-18 95.1 54 81.5
HPP92_007345 Vanilla planifolia HOM05D001090 ORTHO05D002687 2.6e-17 92.8 85 49.4
SMO167G0049 Selaginella moellendorffii HOM05D001090 ORTHO05D002687 6.5e-16 88.2 143 39.9
CBR_g50342 Chara braunii HOM05D001090 ORTHO05D002687 1.0e-13 80.9 117 39.3
SMO347G0291 Selaginella moellendorffii HOM05D001090 ORTHO05D002687 5.7e-12 75.1 118 39.0
Glyma.09G123400 Glycine max HOM05D001090 ORTHO05D002687 6.5e-08 61.6 47 61.7
EL10Ac3g06526 Beta vulgaris HOM05D001090 ORTHO05D002687 1.4e-07 60.5 57 52.6


User provided reference genes

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