Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C297T5 Lonicera japonica HOM05D004393 ORTHO05D004897 2.6e-161 572.0 287 100.0
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 7.4e-84 314.7 331 55.6
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 5.5e-79 298.5 320 54.7
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 3.5e-78 295.8 321 56.1
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 3.0e-77 292.7 321 55.5
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 1.1e-76 290.8 316 55.4
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 9.6e-76 287.7 330 53.0
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 1.6e-75 287.0 313 55.3
DCAR_014776 Daucus carota HOM05D004393 ORTHO05D004897 2.1e-75 286.6 303 54.8
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 8.2e-75 284.6 325 53.8
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 1.2e-73 280.8 334 50.6
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 1.2e-73 280.8 311 53.4
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 4.5e-73 278.9 319 52.4
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.0e-72 277.7 325 52.0
Cfa018204 Carpinus fangiana HOM05D004393 ORTHO05D004897 2.2e-72 276.6 308 52.9
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 3.8e-72 275.8 320 52.5
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 6.5e-72 275.0 306 52.9
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 6.5e-72 275.0 318 52.2
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 4.2e-71 272.3 323 51.4
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 4.2e-71 272.3 335 48.7
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 1.6e-70 270.4 322 50.6
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 2.7e-70 269.6 321 51.4
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 3.5e-70 269.2 316 50.9
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 6.0e-70 268.5 317 50.2
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 1.8e-69 266.9 324 51.5
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 3.9e-69 265.8 323 50.2
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 3.9e-69 265.8 326 53.1
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 8.7e-69 264.6 357 47.9
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 1.1e-68 264.2 326 51.5
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 1.5e-68 263.8 326 51.5
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 2.5e-68 263.1 317 49.5
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 2.5e-68 263.1 323 48.9
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 3.3e-68 262.7 324 49.4
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 5.7e-68 261.9 307 50.5
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 7.4e-68 261.5 322 50.0
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 9.7e-68 261.2 322 50.0
PGSC0003DMG400009216 Solanum tuberosum HOM05D004393 ORTHO05D004897 1.3e-67 260.8 309 51.5
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 2.2e-67 260.0 317 49.2
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 3.7e-67 259.2 276 54.0
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 8.2e-67 258.1 328 47.9
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 8.2e-67 258.1 305 52.5
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 1.8e-66 256.9 370 45.1
PGSC0003DMG402026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 2.4e-66 256.5 326 50.0
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 3.1e-66 256.1 307 48.9
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 3.4e-65 252.7 321 48.9
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 7.7e-65 251.5 290 50.0
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 1.3e-64 250.8 328 47.0
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 2.9e-64 249.6 252 55.6
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 2.9e-64 249.6 290 50.7
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 2.9e-64 249.6 341 44.9
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 5.0e-64 248.8 318 49.1
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 9.4e-63 244.6 256 56.2
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 1.6e-62 243.8 294 46.6
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 1.6e-62 243.8 324 48.1
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 3.6e-62 242.7 299 47.8
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 4.6e-62 242.3 334 47.0
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 1.8e-61 240.4 307 47.9
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 5.1e-61 238.8 317 46.7
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 5.1e-61 238.8 330 47.9
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 6.7e-61 238.4 324 46.9
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 8.8e-61 238.0 292 48.6
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 2.0e-60 236.9 244 53.7
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 2.0e-60 236.9 313 47.0
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 5.7e-60 235.3 306 47.4
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 7.4e-60 235.0 329 46.5
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 1.7e-59 233.8 300 47.7
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 2.2e-59 233.4 299 47.8
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 3.7e-59 232.6 296 48.6
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 4.8e-59 232.3 310 46.5
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 1.1e-58 231.1 249 51.8
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 1.8e-58 230.3 302 45.7
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 6.9e-58 228.4 329 45.0
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 9.1e-58 228.0 287 46.0
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 1.5e-57 227.3 317 46.7
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 2.6e-57 226.5 329 45.3
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 5.9e-57 225.3 304 46.7
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 7.7e-57 224.9 328 46.3
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 1.3e-56 224.2 308 45.1
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 2.2e-56 223.4 322 46.3
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 2.9e-56 223.0 322 46.0
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 6.5e-56 221.9 321 45.8
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 1.1e-55 221.1 315 41.6
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.1e-55 221.1 329 45.6
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.9e-55 220.3 327 43.7
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 2.5e-55 219.9 301 45.2
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 3.2e-55 219.5 321 45.2
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 7.2e-55 218.4 294 44.2
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 7.2e-55 218.4 323 44.9
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 4.7e-54 215.7 316 44.6
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 4.7e-54 215.7 315 41.3
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 7.9e-54 214.9 318 44.3
arahy.Tifrunner.gnm1.ann1.6817V4 Arachis hypogaea HOM05D004393 ORTHO05D004897 2.3e-53 213.4 280 47.5
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 2.3e-53 213.4 318 44.0
CARHR033810 Cardamine hirsuta HOM05D004393 ORTHO05D004897 3.0e-53 213.0 315 43.8
arahy.Tifrunner.gnm1.ann1.MV35XS Arachis hypogaea HOM05D004393 ORTHO05D004897 5.1e-53 212.2 280 46.8
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 6.7e-53 211.8 318 43.7
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 6.7e-53 211.8 323 44.0
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 2.8e-51 206.5 318 43.4
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 2.8e-51 206.5 318 43.4
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 3.7e-51 206.1 316 41.8
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 3.7e-51 206.1 334 39.8
CDE04G2403 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 1.4e-50 204.1 322 41.0
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 2.4e-50 203.4 346 37.9
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 7.0e-50 201.8 277 43.0
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 7.0e-50 201.8 261 45.2
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 9.1e-50 201.4 270 45.2
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 1.2e-49 201.1 299 44.5
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 1.2e-49 201.1 326 42.3
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 1.5e-49 200.7 267 44.9
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 3.5e-49 199.5 247 44.9
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 5.9e-49 198.7 245 47.8
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 6.5e-48 195.3 231 48.9
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 6.1e-46 188.7 271 43.5
BcaB04g17878 Brassica carinata HOM05D004393 ORTHO05D004897 6.7e-45 185.3 289 40.8
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 1.5e-44 184.1 256 45.7
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 2.6e-44 183.3 270 43.0
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 5.7e-44 182.2 300 40.0
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 7.4e-44 181.8 286 43.0
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 8.2e-43 178.3 243 42.4
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 1.6e-41 174.1 253 39.9
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 2.0e-41 173.7 269 45.0
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 5.0e-40 169.1 235 45.1
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 8.5e-40 168.3 224 45.1
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 8.5e-40 168.3 224 45.1
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 1.9e-39 167.2 204 48.5
TAR624G0853 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.6e-38 164.1 128 63.3
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 3.6e-38 162.9 210 47.1
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 1.0e-37 161.4 262 38.5
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 7.5e-36 155.2 317 39.4
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 2.4e-34 150.2 250 37.2
AagrBONN_evm.TU.Sc2ySwM_344.4382 Anthoceros agrestis HOM05D004393 ORTHO05D004897 3.6e-30 136.3 209 42.1
Mapoly0005s0164 Marchantia polymorpha HOM05D004393 ORTHO05D004897 8.8e-29 131.7 191 40.8
SMO351G0170 Selaginella moellendorffii HOM05D004393 ORTHO05D004897 2.2e-27 127.1 254 34.6
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 5.9e-25 119.0 154 47.4
AUR62012506 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.5e-23 114.4 210 40.5
Pp3c27_1110 Physcomitrium patens HOM05D004393 ORTHO05D004897 1.2e-22 111.3 192 34.9
Pp3c16_5970 Physcomitrium patens HOM05D043451 ORTHO05D004897 6.1e-22 109.0 192 34.9
Glyma.20G176566 Glycine max HOM05D004393 ORTHO05D004897 5.2e-21 105.9 189 40.2
CDE12G0855 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 7.5e-20 102.1 126 45.2
Pp3c5_9820 Physcomitrium patens HOM05D004393 ORTHO05D004897 1.3e-19 101.3 193 35.8
Peaxi162Scf00207g01617 Petunia axillaris HOM05D004393 ORTHO05D004897 1.7e-19 100.9 81 60.5
Lalb_Chr24g0401061 Lupinus albus HOM05D004393 ORTHO05D004897 8.3e-19 98.6 134 45.5
EL10Ac1g00069 Beta vulgaris HOM05D004393 ORTHO05D004897 4.5e-17 92.8 160 37.5
Actinidia32880 Actinidia chinensis HOM05D004393 ORTHO05D004897 3.1e-13 80.1 122 45.9


User provided reference genes

Program Settings