Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 7.0e-281 969.9 476 100.0
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 4.1e-196 688.3 496 74.0
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.1e-172 610.5 507 64.9
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 7.0e-172 607.8 504 64.7
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 2.7e-168 595.9 502 63.5
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 2.7e-168 595.9 502 63.5
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 3.6e-168 595.5 506 63.2
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 6.1e-168 594.7 507 63.1
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 1.4e-167 593.6 501 63.7
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 1.8e-167 593.2 501 62.3
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 2.3e-167 592.8 508 63.4
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.0e-167 592.4 489 65.2
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 4.4e-166 588.6 506 62.6
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 7.5e-166 587.8 504 63.3
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 2.2e-165 586.3 495 63.4
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 4.8e-165 585.1 509 63.1
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 6.3e-165 584.7 503 62.2
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 3.1e-164 582.4 510 61.8
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 7.0e-164 581.3 480 64.0
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 7.0e-164 581.3 505 61.0
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 9.1e-164 580.9 508 62.2
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.2e-163 580.5 516 60.9
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.2e-163 580.5 508 62.6
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.6e-163 580.1 508 62.0
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 2.0e-163 579.7 502 62.0
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 3.5e-163 578.9 502 62.5
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 3.5e-163 578.9 502 62.2
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 3.5e-163 578.9 499 60.9
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 5.9e-163 578.2 502 62.0
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 7.7e-163 577.8 500 62.4
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.3e-162 577.0 510 61.4
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 1.3e-162 577.0 470 64.9
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.2e-162 576.2 509 61.9
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.2e-162 576.2 510 61.8
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 2.2e-162 576.2 457 65.4
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 2.2e-162 576.2 510 62.4
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 2.2e-162 576.2 468 65.2
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 3.8e-162 575.5 508 62.2
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 1.9e-161 573.2 502 60.4
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 1.9e-161 573.2 447 66.9
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 1.9e-161 573.2 501 60.7
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 5.5e-161 571.6 503 60.6
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 1.2e-160 570.5 502 61.8
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 1.6e-160 570.1 504 61.3
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 2.1e-160 569.7 506 60.9
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 2.7e-160 569.3 510 61.2
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 2.7e-160 569.3 471 63.7
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 3.6e-160 568.9 503 61.0
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 4.7e-160 568.5 491 61.5
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 6.1e-160 568.2 502 60.6
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 6.1e-160 568.2 502 61.0
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 8.0e-160 567.8 514 60.7
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 8.0e-160 567.8 480 62.7
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 1.0e-159 567.4 508 61.6
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 3.0e-159 565.8 505 61.0
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 5.2e-159 565.1 520 60.4
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 8.8e-159 564.3 490 61.2
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 1.2e-158 563.9 492 61.4
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.5e-158 563.5 511 60.1
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 1.5e-158 563.5 509 61.7
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 2.6e-158 562.8 470 63.4
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 2.6e-158 562.8 492 61.0
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 4.4e-158 562.0 502 60.0
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 4.4e-158 562.0 492 61.2
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 5.7e-158 561.6 492 60.8
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 5.7e-158 561.6 492 60.6
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 5.7e-158 561.6 492 60.8
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 5.7e-158 561.6 492 60.8
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 5.7e-158 561.6 492 60.6
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 5.7e-158 561.6 505 60.6
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 7.5e-158 561.2 503 60.4
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 7.5e-158 561.2 492 61.4
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 1.7e-157 560.1 510 59.8
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 2.2e-157 559.7 492 61.0
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 2.8e-157 559.3 506 59.5
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 2.8e-157 559.3 506 60.3
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 3.7e-157 558.9 507 60.6
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 6.3e-157 558.1 506 59.1
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 8.3e-157 557.8 511 59.3
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.1e-156 557.4 496 60.3
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 1.8e-156 556.6 492 60.0
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 2.4e-156 556.2 496 60.5
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 4.1e-156 555.4 516 58.7
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.4e-156 555.1 494 60.3
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 9.2e-156 554.3 468 63.0
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.2e-155 553.9 459 62.7
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.6e-155 553.5 447 63.8
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 2.0e-155 553.1 480 61.9
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.0e-155 553.1 496 60.3
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 3.8e-154 548.9 521 57.8
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 8.6e-154 547.7 468 62.6
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 8.6e-154 547.7 498 59.8
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 7.3e-153 544.7 503 59.4
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 6.1e-152 541.6 504 60.3
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 8.0e-152 541.2 502 58.8
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 1.5e-150 537.0 505 58.8
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 5.7e-150 535.0 271 95.9
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.7e-149 533.5 473 59.2
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 4.9e-149 531.9 507 57.8
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 6.4e-149 531.6 505 57.4
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 5.4e-148 528.5 503 58.4
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 9.2e-148 527.7 492 59.3
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 2.3e-146 523.1 496 58.1
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.3e-146 523.1 497 58.4
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 3.9e-146 522.3 495 56.6
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 6.8e-143 511.5 508 56.5
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 2.9e-141 506.1 375 68.8
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 1.4e-140 503.8 375 69.6
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 1.3e-138 497.3 495 55.4
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 6.2e-136 488.4 271 87.8
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 8.3e-133 478.0 465 54.6
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 2.4e-132 476.5 461 54.0
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 5.4e-132 475.3 463 53.8
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 2.1e-131 473.4 498 51.6
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 1.8e-127 460.3 502 53.2
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 2.2e-117 426.8 504 49.8
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 1.1e-116 424.5 471 49.9
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 4.6e-115 419.1 476 51.1
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 5.6e-113 412.1 497 47.1
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.2e-110 404.4 507 46.5
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 9.9e-110 401.4 274 71.2
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 1.0e-106 391.3 508 45.3
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.0e-106 391.3 375 55.2
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 9.9e-102 374.8 468 46.4
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 2.2e-101 373.6 473 45.0
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.2e-99 367.9 450 46.9
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 4.6e-99 365.9 450 46.7
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.0e-98 364.8 449 47.0
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 7.4e-97 358.6 511 44.2
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 4.6e-91 339.3 214 80.8
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 1.4e-87 327.8 482 42.9
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.1e-74 282.7 447 39.4
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.3e-72 278.1 479 38.4
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 1.8e-71 274.2 303 47.5
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 1.6e-67 261.2 252 49.6
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 6.3e-64 249.2 301 48.5
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.0e-62 244.2 419 39.9
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 1.3e-61 241.5 293 42.0
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.5e-53 212.6 378 38.4
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 7.5e-33 146.0 82 80.5
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.7e-32 144.8 257 35.8
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 6.6e-29 132.9 85 80.0
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.4e-26 125.2 167 43.7
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 4.1e-23 113.6 271 34.3
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 5.4e-23 113.2 268 34.3
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 5.0e-21 106.7 67 83.6
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 3.3e-20 104.0 60 80.0
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 2.7e-14 84.3 73 52.1
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 6.0e-14 83.2 137 38.0
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.4e-07 62.0 44 61.4
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 3.2e-07 60.8 29 89.7
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 3.2e-07 60.8 42 71.4


User provided reference genes

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