Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C254T5 Lonicera japonica HOM05D002986 ORTHO05D007611 1.3e-48 196.1 97 100.0
Lj7A250T23 Lonicera japonica HOM05D002986 ORTHO05D007611 1.6e-43 179.1 96 92.7
Dinv17357 Davidia involucrata HOM05D002986 ORTHO05D007611 1.7e-37 159.1 96 79.2
DCAR_007997 Daucus carota HOM05D002986 ORTHO05D007611 8.7e-37 156.8 96 77.1
Dinv40602 Davidia involucrata HOM05D002986 ORTHO05D007611 3.3e-36 154.8 96 78.1
vmacro03903 Vaccinium macrocarpon HOM05D002986 ORTHO05D007611 2.1e-35 152.1 96 74.0
CSS0042999 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D007611 6.2e-35 150.6 96 72.9
Actinidia05655 Actinidia chinensis HOM05D002986 ORTHO05D007611 8.1e-35 150.2 96 74.0
Rhsim13G0180300 Rhododendron simsii HOM05D002986 ORTHO05D007611 8.1e-35 150.2 96 74.0
CiPaw.10G052700 Carya illinoinensis HOM05D002986 ORTHO05D007611 1.8e-34 149.1 96 71.9
CSS0040504 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D007611 2.4e-34 148.7 96 71.9
QL07p003708 Quercus lobata HOM05D002986 ORTHO05D007611 3.1e-34 148.3 96 71.9
PSO210G3062 Papaver somniferum HOM05D002986 ORTHO05D007611 1.2e-33 146.4 95 70.5
TAR624G1385 Trochodendron aralioides HOM05D002986 ORTHO05D007611 2.6e-33 145.2 96 71.9
Atru.chr10.1787 Acer truncatum HOM05D002986 ORTHO05D007611 4.5e-33 144.4 96 70.8
Nn1g06408 Nelumbo nucifera HOM05D002986 ORTHO05D007611 4.5e-33 144.4 96 70.8
MD10G1288900 Malus domestica HOM05D002986 ORTHO05D007611 5.8e-33 144.1 96 70.8
Cc02_g13870 Coffea canephora HOM05D002986 ORTHO05D007611 7.6e-33 143.7 96 69.8
Cfa000530 Carpinus fangiana HOM05D002986 ORTHO05D007611 1.3e-32 142.9 96 68.8
Prupe.4G052800 Prunus persica HOM05D002986 ORTHO05D007611 1.7e-32 142.5 96 67.7
Nitab4.5_0017998g0010 Nicotiana tabacum HOM05D002986 ORTHO05D007611 3.8e-32 141.4 95 69.5
PSO832G1556 Papaver somniferum HOM05D002986 ORTHO05D007611 4.9e-32 141.0 94 68.1
RcHm_v2.0_Chr5g0009291 Rosa chinensis HOM05D002986 ORTHO05D007611 6.4e-32 140.6 96 68.8
CAN.G529.58 Capsicum annuum HOM05D002986 ORTHO05D007611 8.4e-32 140.2 95 69.5
Glyma.13G235200 Glycine max HOM05D002986 ORTHO05D007611 8.4e-32 140.2 96 65.6
HanXRQChr11g0346401 Helianthus annuus HOM05D002986 ORTHO05D007611 8.4e-32 140.2 96 63.5
Lj6g0015281 Lotus japonicus HOM05D002986 ORTHO05D007611 8.4e-32 140.2 96 64.6
FAN25G0667 Fragaria x ananassa HOM05D002986 ORTHO05D007611 1.1e-31 139.8 96 67.7
Ciclev10015063m.g Citrus clementina HOM05D002986 ORTHO05D007611 1.4e-31 139.4 96 67.7
Peaxi162Scf00099g00032 Petunia axillaris HOM05D002986 ORTHO05D007611 1.4e-31 139.4 95 69.5
Solyc02g077650.2 Solanum lycopersicum HOM05D002986 ORTHO05D007611 1.4e-31 139.4 95 68.4
Sopen02g022550 Solanum pennellii HOM05D002986 ORTHO05D007611 1.4e-31 139.4 95 68.4
PGSC0003DMG401031751 Solanum tuberosum HOM05D002986 ORTHO05D007611 1.4e-31 139.4 95 68.4
Nitab4.5_0001955g0120 Nicotiana tabacum HOM05D002986 ORTHO05D007611 1.9e-31 139.0 95 68.4
Sc17g0005920 Simmondsia chinensis HOM05D002986 ORTHO05D007611 2.4e-31 138.7 95 69.5
FvH4_3g08550 Fragaria vesca HOM05D002986 ORTHO05D007611 3.2e-31 138.3 96 67.7
FAN07G2492 Fragaria x ananassa HOM05D002986 ORTHO05D007611 3.2e-31 138.3 96 67.7
Lalb_Chr18g0059371 Lupinus albus HOM05D002986 ORTHO05D007611 3.2e-31 138.3 96 62.5
Oeu056521.1 Olea europaea HOM05D002986 ORTHO05D007611 3.2e-31 138.3 96 69.8
Potri.011G057900 Populus trichocarpa HOM05D002986 ORTHO05D007611 3.2e-31 138.3 96 63.5
FvH4_4g07830 Fragaria vesca HOM05D002986 ORTHO05D007611 4.2e-31 137.9 90 71.1
FAN12G1172 Fragaria x ananassa HOM05D002986 ORTHO05D007611 4.2e-31 137.9 90 71.1
EL10Ac8g20438 Beta vulgaris HOM05D002986 ORTHO05D007611 9.3e-31 136.7 95 67.4
AUR62014868 Chenopodium quinoa HOM05D002986 ORTHO05D007611 9.3e-31 136.7 95 66.3
FAN16G0081 Fragaria x ananassa HOM05D002986 ORTHO05D007611 9.3e-31 136.7 96 65.6
Sabra11G0040100 Salix brachista HOM05D002986 ORTHO05D007611 1.2e-30 136.3 96 61.5
Haze_06370 Corylus avellana HOM05D002986 ORTHO05D007611 1.6e-30 136.0 90 70.0
FAN11G0723 Fragaria x ananassa HOM05D002986 ORTHO05D007611 1.6e-30 136.0 96 66.7
Lsat_1_v5_gn_4_51801 Lactuca sativa HOM05D002986 ORTHO05D007611 2.7e-30 135.2 96 62.5
Ah.09g237590 Amaranthus hybridus HOM05D002986 ORTHO05D007611 3.5e-30 134.8 95 67.4
Cpa.g.sc8167.1 Carica papaya HOM05D002986 ORTHO05D007611 3.5e-30 134.8 96 68.8
TPR.G25962 Trifolium pratense HOM05D002986 ORTHO05D007611 3.5e-30 134.8 96 62.5
Manes.17G049500 Manihot esculenta HOM05D002986 ORTHO05D007611 4.6e-30 134.4 96 63.5
TWI63G1258 Tripterygium wilfordii HOM05D002986 ORTHO05D007611 4.6e-30 134.4 96 66.7
ECA234G3389 Erigeron canadensis HOM05D002986 ORTHO05D007611 6.0e-30 134.0 96 61.5
PGR083G2565 Punica granatum HOM05D002986 ORTHO05D007611 6.0e-30 134.0 96 62.5
TPR.G11746 Trifolium pratense HOM05D002986 ORTHO05D007611 7.9e-30 133.7 96 62.5
AUR62031074 Chenopodium quinoa HOM05D002986 ORTHO05D007611 1.0e-29 133.3 95 65.3
Duzib235G0042 Durio zibethinus HOM05D002986 ORTHO05D007611 1.8e-29 132.5 96 62.5
Psat1g202920 Pisum sativum HOM05D002986 ORTHO05D007611 2.3e-29 132.1 96 59.4
Migut.M01106 Erythranthe guttata HOM05D002986 ORTHO05D007611 3.0e-29 131.7 94 69.1
GSVIVG01011280001 Vitis vinifera HOM05D002986 ORTHO05D007611 3.9e-29 131.3 96 65.6
Sed0000822 Sechium edule HOM05D002986 ORTHO05D007611 6.7e-29 130.6 96 65.6
FAN17G1471 Fragaria x ananassa HOM05D002986 ORTHO05D007611 8.7e-29 130.2 96 65.6
CsaV3_1G012580 Cucumis sativus L. HOM05D002986 ORTHO05D007611 1.1e-28 129.8 96 63.5
Phvul.010G102600 Phaseolus vulgaris HOM05D002986 ORTHO05D007611 1.1e-28 129.8 96 61.5
arahy.Tifrunner.gnm1.ann1.IYAJ8R Arachis hypogaea HOM05D002986 ORTHO05D007611 1.5e-28 129.4 96 60.4
MELO3C035724.2 Cucumis melo HOM05D002986 ORTHO05D007611 1.5e-28 129.4 96 63.5
SGA_v2.0_scaffold22G09659 Striga asiatica HOM05D002986 ORTHO05D007611 1.5e-28 129.4 96 65.6
arahy.Tifrunner.gnm1.ann1.IL2A8L Arachis hypogaea HOM05D002986 ORTHO05D007611 1.9e-28 129.0 94 61.7
Gohir.A05G158800 Gossypium hirsutum HOM05D002986 ORTHO05D007611 1.9e-28 129.0 94 62.8
Gorai.009G166600 Gossypium raimondii HOM05D002986 ORTHO05D007611 1.9e-28 129.0 94 62.8
COL.COLO4_31418 Corchorus olitorius HOM05D002986 ORTHO05D007611 3.3e-28 128.3 94 62.8
FAN22G0034 Fragaria x ananassa HOM05D002986 ORTHO05D007611 3.3e-28 128.3 96 64.6
Thecc.06G180800 Theobroma cacao HOM05D002986 ORTHO05D007611 4.3e-28 127.9 94 63.8
Eucgr.E03336 Eucalyptus grandis HOM05D002986 ORTHO05D007611 5.6e-28 127.5 95 62.1
Aqoxy1G00388 Aquilegia oxysepala HOM05D002986 ORTHO05D007611 7.4e-28 127.1 96 62.5
MSTRG.7361 Avicennia marina HOM05D002986 ORTHO05D007611 1.3e-27 126.3 96 62.5
Carub.0008s0183 Capsella rubella HOM05D002986 ORTHO05D007611 1.6e-27 125.9 94 61.7
Gohir.D05G161532 Gossypium hirsutum HOM05D002986 ORTHO05D007611 1.6e-27 125.9 94 61.7
ClCG03G008000 Citrullus lanatus HOM05D002986 ORTHO05D007611 2.1e-27 125.6 96 62.5
MBI11_g00911_MAGBIO Magnolia biondii HOM05D002986 ORTHO05D007611 2.8e-27 125.2 95 61.1
AL8G12410 Arabidopsis lyrata HOM05D002986 ORTHO05D007611 3.7e-27 124.8 96 60.4
VMungo0331G1630 Vigna mungo HOM05D002986 ORTHO05D007611 3.7e-27 124.8 96 58.3
CARHR175750 Cardamine hirsuta HOM05D002986 ORTHO05D007611 4.8e-27 124.4 96 61.5
Eucgr.E03343 Eucalyptus grandis HOM05D002986 ORTHO05D007611 4.8e-27 124.4 90 63.3
Eucgr.E03142 Eucalyptus grandis HOM05D002986 ORTHO05D007611 8.1e-27 123.6 89 64.0
C07p29280 Brassica napus HOM05D002986 ORTHO05D007611 1.4e-26 122.9 96 61.5
BolC7t43470H Brassica oleracea HOM05D002986 ORTHO05D007611 1.4e-26 122.9 96 61.5
AT5G46100 Arabidopsis thaliana HOM05D002986 ORTHO05D007611 3.1e-26 121.7 96 59.4
A06p46180 Brassica napus HOM05D002986 ORTHO05D007611 3.1e-26 121.7 96 60.4
Thhalv10000872m.g Eutrema salsugineum HOM05D002986 ORTHO05D007611 4.0e-26 121.3 96 60.4
BraA06t27482Z Brassica rapa HOM05D002986 ORTHO05D007611 9.0e-26 120.2 96 59.4
Sp2g10960 Schrenkiella parvula HOM05D002986 ORTHO05D007611 1.5e-25 119.4 96 58.3
Aa31LG9G6870 Aethionema arabicum HOM05D002986 ORTHO05D007611 2.0e-25 119.0 96 59.4
THA.LOC104798403 Tarenaya hassleriana HOM05D002986 ORTHO05D007611 2.0e-25 119.0 96 57.3
ATR0564G055 Amborella trichopoda HOM05D002986 ORTHO05D007611 3.4e-25 118.2 93 60.2
SHI00257 Sapria himalayana HOM05D002986 ORTHO05D007611 4.5e-25 117.9 95 56.8
SEGI_18794 Sequoiadendron giganteum HOM05D002986 ORTHO05D007611 2.7e-22 108.6 95 53.7
Ca_00364_v3 Cicer arietinum L. HOM05D002986 ORTHO05D007611 8.2e-19 97.1 68 61.8
TAR624G0084 Trochodendron aralioides HOM05D000029 ORTHO05D001395 3.4e-17 91.7 65 64.6
Eucgr.E03144 Eucalyptus grandis HOM05D002986 ORTHO05D007611 1.7e-16 89.4 64 65.6
Eucgr.E03340 Eucalyptus grandis HOM05D002986 ORTHO05D007611 1.7e-16 89.4 95 48.4
C02p47050 Brassica napus HOM05D002986 ORTHO05D007611 5.1e-13 77.8 54 68.5
BolC2t10753H Brassica oleracea HOM05D002986 ORTHO05D007611 5.1e-13 77.8 54 68.5
BcaC03g16829 Brassica carinata HOM05D002986 ORTHO05D007611 8.7e-13 77.0 65 58.5
Ciclev10019806m.g Citrus clementina HOM05D004271 ORTHO05D006011 2.9e-08 62.0 89 29.2
Lalb_Chr13g0291111 Lupinus albus HOM05D004271 ORTHO05D006011 2.9e-08 62.0 89 30.3
arahy.Tifrunner.gnm1.ann1.58SQTR Arachis hypogaea HOM05D004271 ORTHO05D006011 3.8e-08 61.6 88 30.7
Peaxi162Scf00542g00067 Petunia axillaris HOM05D004271 ORTHO05D006011 6.5e-08 60.8 89 31.5
Psat1g029400 Pisum sativum HOM05D004271 ORTHO05D006011 8.5e-08 60.5 89 30.3
Lj6P606T31 Lonicera japonica HOM05D004271 ORTHO05D006011 1.1e-07 60.1 90 30.0
ECA234G2429 Erigeron canadensis HOM05D004271 ORTHO05D006011 1.4e-07 59.7 89 31.5
Eucgr.E00027 Eucalyptus grandis HOM05D002986 ORTHO05D003966 1.4e-07 59.7 88 30.7
TPR.G22318 Trifolium pratense HOM05D004271 ORTHO05D006011 1.4e-07 59.7 89 29.2
TAR375G0273 Trochodendron aralioides HOM05D004271 ORTHO05D006011 1.4e-07 59.7 89 31.5
arahy.Tifrunner.gnm1.ann1.62512W Arachis hypogaea HOM05D004271 ORTHO05D006011 1.9e-07 59.3 88 29.5
CiPaw.02G044800 Carya illinoinensis HOM05D004271 ORTHO05D006011 1.9e-07 59.3 95 27.4
Dinv20850 Davidia involucrata HOM05D004271 ORTHO05D006011 1.9e-07 59.3 89 30.3
Phvul.004G147700 Phaseolus vulgaris HOM05D004271 ORTHO05D006011 1.9e-07 59.3 89 28.1
AUR62020973 Chenopodium quinoa HOM05D004271 ORTHO05D006011 2.5e-07 58.9 89 28.1
Glyma.09G172300 Glycine max HOM05D004271 ORTHO05D006011 2.5e-07 58.9 89 28.1
HanXRQChr10g0294731 Helianthus annuus HOM05D004271 ORTHO05D006011 2.5e-07 58.9 89 29.2
Medtr5g048070 Medicago truncatula HOM05D004271 ORTHO05D006011 2.5e-07 58.9 89 29.2
SHI13050 Sapria himalayana HOM05D002986 ORTHO05D003966 2.5e-07 58.9 88 31.8
MSTRG.6175 Avicennia marina HOM05D004271 ORTHO05D006011 3.2e-07 58.5 89 30.3
DCAR_030646 Daucus carota HOM05D004271 ORTHO05D006011 3.2e-07 58.5 87 31.0
Nn1g05237 Nelumbo nucifera HOM05D004271 ORTHO05D006011 4.2e-07 58.2 90 30.0
VMungo0464G1245 Vigna mungo HOM05D004271 ORTHO05D006011 5.5e-07 57.8 89 27.0
Lsat_1_v5_gn_5_104340 Lactuca sativa HOM05D004271 ORTHO05D006011 7.2e-07 57.4 89 27.0
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 7.2e-07 57.4 89 30.3
Prupe.2G028400 Prunus persica HOM05D004271 ORTHO05D006011 7.2e-07 57.4 89 28.1
MD12G1085500 Malus domestica HOM05D004271 ORTHO05D006011 9.3e-07 57.0 95 27.4
RcHm_v2.0_Chr1g0360171 Rosa chinensis HOM05D004271 ORTHO05D006011 9.3e-07 57.0 89 27.0
SGA_v2.0_scaffold66G22520 Striga asiatica HOM05D004271 ORTHO05D006011 9.3e-07 57.0 89 30.3
AL1G15500 Arabidopsis lyrata HOM05D004271 ORTHO05D006011 1.2e-06 56.6 89 27.0
CAN.G177.21 Capsicum annuum HOM05D004271 ORTHO05D006011 1.2e-06 56.6 89 28.1
CsaV3_4G026020 Cucumis sativus L. HOM05D007172 ORTHO05D009267 1.2e-06 56.6 96 31.2
PGSC0003DMG400017403 Solanum tuberosum HOM05D004271 ORTHO05D006011 1.2e-06 56.6 89 30.3
CDE07G1865 Ceratophyllum demersum HOM05D002986 ORTHO05D003966 1.6e-06 56.2 93 30.1
Hma1.2p1_1427F.1_g282910 Hydrangea macrophylla HOM05D004271 ORTHO05D006011 1.6e-06 56.2 89 31.5
Lj2g0009525 Lotus japonicus HOM05D004271 ORTHO05D006011 1.6e-06 56.2 89 28.1
EL10Ac3g07373 Beta vulgaris HOM05D004271 ORTHO05D006011 2.1e-06 55.8 90 26.7
MELO3C003226.2 Cucumis melo HOM05D007172 ORTHO05D009267 2.1e-06 55.8 96 29.2
FAN03G0025 Fragaria x ananassa HOM05D004271 ORTHO05D006011 2.1e-06 55.8 89 27.0
GSVIVG01027435001 Vitis vinifera HOM05D004271 ORTHO05D006011 2.1e-06 55.8 89 27.0
ClCG04G007230 Citrullus lanatus HOM05D007172 ORTHO05D009267 2.7e-06 55.5 96 28.1
FAN06G1186 Fragaria x ananassa HOM05D004271 ORTHO05D006011 2.7e-06 55.5 89 25.8
Potri.016G111600 Populus trichocarpa HOM05D007172 ORTHO05D009267 2.7e-06 55.5 96 29.2
Aa31LG1G19040 Aethionema arabicum HOM05D004271 ORTHO05D006011 3.6e-06 55.1 89 25.8
AUR62043199 Chenopodium quinoa HOM05D004271 ORTHO05D006011 3.6e-06 55.1 89 27.0
Cc11_g01170 Coffea canephora HOM05D004271 ORTHO05D006011 3.6e-06 55.1 89 27.0
PGR083G0469 Punica granatum HOM05D002986 ORTHO05D003966 3.6e-06 55.1 90 32.2
Sabra16G0107800 Salix brachista HOM05D007172 ORTHO05D009267 3.6e-06 55.1 96 30.2
unitig_0.g565 Utricularia gibba HOM05D000318 ORTHO05D000420 3.6e-06 55.1 89 30.3
Thhalv10007424m.g Eutrema salsugineum HOM05D004271 ORTHO05D006011 6.1e-06 54.3 89 27.0
Potri.002G179300 Populus trichocarpa HOM05D004271 ORTHO05D006011 6.1e-06 54.3 89 24.7
Migut.J01410 Erythranthe guttata HOM05D004271 ORTHO05D006011 7.9e-06 53.9 91 29.7
Hma1.2p1_0922F.1_g236940 Hydrangea macrophylla HOM05D004271 ORTHO05D006011 7.9e-06 53.9 89 30.3
Medtr6g071320 Medicago truncatula HOM05D004271 ORTHO05D006011 7.9e-06 53.9 83 31.3


User provided reference genes

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