Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 5.0e-103 377.9 190 100.0
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 2.4e-97 359.0 188 96.8
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 2.0e-96 355.9 188 95.7
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.2e-93 346.7 209 85.6
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 1.7e-79 299.7 188 80.9
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 1.1e-78 297.0 188 80.3
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 1.5e-78 296.6 185 79.5
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 1.5e-78 296.6 188 80.3
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 1.5e-78 296.6 188 80.3
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 3.3e-78 295.4 188 79.8
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 5.6e-78 294.7 188 77.7
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 5.6e-78 294.7 188 77.7
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.2e-77 293.5 188 79.3
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 4.0e-76 288.5 188 77.7
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 6.8e-76 287.7 188 78.2
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 1.2e-75 287.0 188 78.2
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 5.8e-75 284.6 185 74.6
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 5.8e-75 284.6 185 74.6
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 7.5e-75 284.3 188 76.1
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 1.7e-74 283.1 188 75.0
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 3.2e-73 278.9 188 72.3
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 4.1e-73 278.5 188 73.9
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 5.4e-73 278.1 185 75.1
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 9.2e-73 277.3 202 70.8
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 1.2e-72 276.9 188 75.0
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.6e-72 276.6 185 74.6
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.6e-72 276.6 185 74.6
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 2.1e-72 276.2 208 69.2
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 2.7e-72 275.8 188 73.4
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 3.5e-72 275.4 188 73.4
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 7.8e-72 274.2 188 73.4
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 7.8e-72 274.2 183 74.9
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 1.0e-71 273.9 184 75.0
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.0e-71 273.9 189 72.5
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.3e-71 273.5 186 73.7
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 1.3e-71 273.5 188 73.9
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 2.3e-71 272.7 188 72.9
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 3.0e-71 272.3 183 74.9
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 5.1e-71 271.6 185 73.0
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.5e-70 270.0 179 78.2
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.5e-70 270.0 179 78.2
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.3e-70 268.9 179 77.7
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 9.5e-70 267.3 188 70.2
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 1.2e-69 266.9 188 71.8
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 1.2e-69 266.9 188 69.7
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 2.8e-69 265.8 185 70.8
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 2.8e-69 265.8 190 71.1
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.8e-69 265.8 179 77.1
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 2.8e-69 265.8 187 71.7
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 3.6e-69 265.4 188 69.7
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 6.2e-69 264.6 188 70.7
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 3.1e-68 262.3 179 75.4
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 6.8e-68 261.2 188 69.1
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.2e-67 260.4 190 66.8
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 1.2e-67 260.4 183 69.4
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 5.8e-67 258.1 186 68.3
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 7.6e-67 257.7 189 67.7
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 1.3e-66 256.9 190 69.5
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 1.7e-66 256.5 175 71.4
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 2.9e-66 255.8 188 69.1
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.9e-66 255.8 185 70.3
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 3.7e-66 255.4 175 72.0
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 4.9e-66 255.0 185 70.3
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 4.9e-66 255.0 183 68.3
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 6.4e-66 254.6 185 70.8
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 8.4e-66 254.2 183 69.9
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 1.1e-65 253.8 183 70.5
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 4.1e-65 251.9 190 68.4
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 5.4e-65 251.5 153 81.7
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 1.6e-64 250.0 183 66.1
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 2.7e-64 249.2 190 68.9
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 2.7e-64 249.2 183 66.7
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 2.7e-64 249.2 183 68.9
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 4.6e-64 248.4 183 66.7
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 4.6e-64 248.4 188 66.5
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 4.6e-64 248.4 179 69.8
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 7.8e-64 247.7 175 71.4
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 7.8e-64 247.7 183 68.9
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 7.8e-64 247.7 185 68.6
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 7.8e-64 247.7 155 78.7
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 1.0e-63 247.3 183 67.2
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 2.3e-63 246.1 267 52.4
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 5.1e-63 245.0 183 66.7
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 1.1e-62 243.8 176 68.8
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 1.5e-62 243.4 183 66.7
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 2.5e-62 242.7 177 66.7
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 3.3e-62 242.3 195 62.6
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 3.3e-62 242.3 175 67.4
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 5.6e-62 241.5 195 62.6
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 7.3e-62 241.1 176 68.8
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 3.1e-60 235.7 209 62.2
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 1.5e-59 233.4 155 73.5
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 1.5e-59 233.4 175 67.4
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 2.0e-59 233.0 175 66.9
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 2.9e-58 229.2 183 60.1
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 7.1e-57 224.6 183 62.3
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 7.1e-57 224.6 155 72.9
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 3.5e-56 222.2 183 59.6
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.1e-54 217.2 185 58.4
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 1.1e-54 217.2 190 57.9
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 1.3e-53 213.8 193 57.0
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 6.2e-53 211.5 184 63.0
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 9.9e-51 204.1 183 54.1
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 3.2e-49 199.1 183 54.1
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 3.5e-48 195.7 183 54.1
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 4.6e-48 195.3 183 53.0
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 6.0e-48 194.9 183 53.6
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 3.0e-47 192.6 207 54.6
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 2.5e-46 189.5 183 53.0
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 4.3e-46 188.7 183 51.9
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 6.9e-44 181.4 183 50.8
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 4.5e-43 178.7 183 50.8
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 3.8e-42 175.6 183 49.7
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 8.4e-42 174.5 184 55.4
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 1.1e-41 174.1 183 49.2
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 1.1e-41 174.1 183 49.2
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 1.1e-41 174.1 183 49.2
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 6.0e-40 168.3 183 48.1
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 3.0e-39 166.0 183 47.0
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 3.0e-39 166.0 183 47.0
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 8.7e-39 164.5 106 79.2
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.5e-38 162.9 156 60.3
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 5.3e-36 155.2 148 54.7
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 7.1e-33 144.8 181 44.2
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.0e-31 141.0 112 61.6
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 5.7e-30 135.2 82 85.4
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 8.4e-26 121.3 86 70.9
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 8.7e-23 111.3 82 68.3
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.5e-22 109.8 93 58.1
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 4.3e-22 109.0 75 70.7
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 6.3e-21 105.1 74 68.9
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.7e-18 97.1 82 57.3
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 2.2e-18 96.7 152 38.2
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.2e-18 96.7 87 56.3
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 6.5e-18 95.1 76 59.2
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 1.6e-16 90.5 90 55.6
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 2.3e-15 86.7 97 50.5
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 1.5e-14 84.0 156 34.0
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 2.0e-14 83.6 119 38.7
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 3.1e-12 76.3 160 30.0
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 6.9e-12 75.1 66 60.6
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.6e-11 73.2 89 51.7


User provided reference genes

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