Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C251T2 Lonicera japonica HOM05D006399 ORTHO05D007988 2.1e-131 472.2 219 100.0
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 5.3e-82 308.1 313 54.6
TAR622G1196 Trochodendron aralioides HOM05D006399 ORTHO05D007988 2.1e-67 259.6 303 46.5
CSS0033869 Camellia sinensis var. sinensis HOM05D006399 ORTHO05D007988 6.2e-67 258.1 312 45.8
Actinidia31971 Actinidia chinensis HOM05D006399 ORTHO05D007988 3.8e-64 248.8 317 44.2
Dinv34129 Davidia involucrata HOM05D006399 ORTHO05D007988 4.9e-64 248.4 312 45.2
DCAR_007171 Daucus carota HOM05D006399 ORTHO05D007988 6.5e-64 248.1 315 44.1
Actinidia17748 Actinidia chinensis HOM05D006399 ORTHO05D007988 1.1e-63 247.3 316 44.6
Migut.L01261 Erythranthe guttata HOM05D006399 ORTHO05D007988 1.1e-63 247.3 292 46.9
Cc00_g16610 Coffea canephora HOM05D006399 ORTHO05D007988 4.2e-63 245.4 298 45.3
Oeu005762.1 Olea europaea HOM05D006399 ORTHO05D007988 7.1e-63 244.6 315 43.2
GSVIVG01005154001 Vitis vinifera HOM05D006399 ORTHO05D007988 4.6e-62 241.9 276 46.0
Haze_11970 Corylus avellana HOM05D006399 ORTHO05D007988 1.3e-61 240.4 311 44.1
Rhsim12G0079500 Rhododendron simsii HOM05D006399 ORTHO05D007988 1.8e-61 240.0 309 43.7
RcHm_v2.0_Chr4g0439341 Rosa chinensis HOM05D006399 ORTHO05D007988 1.9e-60 236.5 300 42.7
Cfa008944 Carpinus fangiana HOM05D006399 ORTHO05D007988 3.3e-60 235.7 315 42.9
FAN07G1460 Fragaria x ananassa HOM05D006399 ORTHO05D007988 3.3e-60 235.7 300 42.3
CANSAT64G0537 Cannabis sativa HOM05D006399 ORTHO05D007988 5.7e-60 235.0 309 42.4
Cfa008945 Carpinus fangiana HOM05D006399 ORTHO05D007988 5.7e-60 235.0 309 43.0
Prupe.1G278300 Prunus persica HOM05D006399 ORTHO05D007988 7.4e-60 234.6 319 42.6
Lalb_Chr04g0255911 Lupinus albus HOM05D006399 ORTHO05D007988 9.6e-60 234.2 318 41.5
CiPaw.05G130700 Carya illinoinensis HOM05D006399 ORTHO05D007988 1.6e-59 233.4 314 42.0
MD16G1068900 Malus domestica HOM05D006399 ORTHO05D007988 1.6e-59 233.4 308 43.2
CiPaw.05G130800 Carya illinoinensis HOM05D006399 ORTHO05D007988 3.7e-59 232.3 265 46.4
CiPaw.06G087600 Carya illinoinensis HOM05D006399 ORTHO05D007988 3.7e-59 232.3 310 42.9
FvH4_4g30980 Fragaria vesca HOM05D006399 ORTHO05D007988 4.8e-59 231.9 298 41.9
FAN12G0639 Fragaria x ananassa HOM05D006399 ORTHO05D007988 1.4e-58 230.3 298 41.6
Lj7P254T18 Lonicera japonica HOM05D006399 ORTHO05D007988 1.8e-58 229.9 139 79.9
Manes.05G105200 Manihot esculenta HOM05D006399 ORTHO05D007988 1.8e-58 229.9 313 40.9
Nn3g17286 Nelumbo nucifera HOM05D006399 ORTHO05D007988 5.3e-58 228.4 309 42.4
Nn3g17302 Nelumbo nucifera HOM05D006399 ORTHO05D007988 5.3e-58 228.4 309 42.4
Nitab4.5_0004661g0030 Nicotiana tabacum HOM05D006399 ORTHO05D007988 6.9e-58 228.0 307 42.3
QL93p1999_0143 Quercus lobata HOM05D006399 ORTHO05D007988 6.9e-58 228.0 310 43.2
Dinv07949 Davidia involucrata HOM05D006399 ORTHO05D007988 9.0e-58 227.6 289 44.3
Dinv34130 Davidia involucrata HOM05D006399 ORTHO05D007988 9.0e-58 227.6 289 44.3
QL03p069077 Quercus lobata HOM05D006399 ORTHO05D007988 1.2e-57 227.3 310 43.2
Eucgr.B03205 Eucalyptus grandis HOM05D006399 ORTHO05D007988 2.6e-57 226.1 307 42.7
Phvul.003G046500 Phaseolus vulgaris HOM05D006399 ORTHO05D007988 3.4e-57 225.7 310 40.3
QL12p039367 Quercus lobata HOM05D006399 ORTHO05D007988 3.4e-57 225.7 309 42.4
VMungo1215G0113 Vigna mungo HOM05D006399 ORTHO05D007988 3.4e-57 225.7 310 40.3
Lsat_1_v5_gn_3_51980 Lactuca sativa HOM05D006399 ORTHO05D007988 4.5e-57 225.3 304 42.8
CSS0044828 Camellia sinensis var. sinensis HOM05D006399 ORTHO05D007988 5.9e-57 224.9 314 42.0
RcHm_v2.0_Chr4g0439361 Rosa chinensis HOM05D006399 ORTHO05D007988 5.9e-57 224.9 293 44.4
Haze_11971 Corylus avellana HOM05D006399 ORTHO05D007988 1.0e-56 224.2 309 41.4
Sabra08G0067200 Salix brachista HOM05D006399 ORTHO05D007988 1.3e-56 223.8 316 41.8
Cpa.g.sc1.57 Carica papaya HOM05D006399 ORTHO05D007988 1.7e-56 223.4 311 41.5
Lj2g0004295 Lotus japonicus HOM05D006399 ORTHO05D007988 2.2e-56 223.0 315 39.7
Nitab4.5_0000145g0020 Nicotiana tabacum HOM05D006399 ORTHO05D007988 2.2e-56 223.0 307 41.4
FAN22G2397 Fragaria x ananassa HOM05D006399 ORTHO05D007988 2.9e-56 222.6 225 52.9
Glyma.01G052300 Glycine max HOM05D006399 ORTHO05D007988 2.9e-56 222.6 315 39.4
Potri.008G089800 Populus trichocarpa HOM05D006399 ORTHO05D007988 5.0e-56 221.9 316 41.5
Duzib248G1019 Durio zibethinus HOM05D006399 ORTHO05D007988 1.1e-55 220.7 313 39.9
Thecc.02G341500 Theobroma cacao HOM05D006399 ORTHO05D007988 1.1e-55 220.7 310 39.4
unitig_699.g19915 Utricularia gibba HOM05D006399 ORTHO05D007988 1.1e-55 220.7 306 41.5
Atru.chr11.1740 Acer truncatum HOM05D006399 ORTHO05D007988 1.4e-55 220.3 317 40.1
PSO210G1214 Papaver somniferum HOM05D006399 ORTHO05D007988 1.4e-55 220.3 305 42.0
Psat2g116280 Pisum sativum HOM05D006399 ORTHO05D007988 1.4e-55 220.3 309 39.5
FvH4_4g30990 Fragaria vesca HOM05D006399 ORTHO05D007988 1.9e-55 219.9 292 43.5
Glyma.02G110300 Glycine max HOM05D006399 ORTHO05D007988 2.5e-55 219.5 315 39.4
HanXRQChr15g0476901 Helianthus annuus HOM05D006399 ORTHO05D007988 2.5e-55 219.5 309 41.1
Aqoxy3G00634 Aquilegia oxysepala HOM05D006399 ORTHO05D007988 5.5e-55 218.4 307 41.0
Medtr5g042100 Medicago truncatula HOM05D006399 ORTHO05D007988 5.5e-55 218.4 309 39.8
FAN22G0994 Fragaria x ananassa HOM05D006399 ORTHO05D007988 7.2e-55 218.0 292 43.2
Gohir.D13G077400 Gossypium hirsutum HOM05D006399 ORTHO05D007988 7.2e-55 218.0 305 39.7
Gorai.013G088500 Gossypium raimondii HOM05D006399 ORTHO05D007988 7.2e-55 218.0 305 39.7
Ca_04827_v3 Cicer arietinum L. HOM05D006399 ORTHO05D007988 1.2e-54 217.2 309 39.8
FAN07G2088 Fragaria x ananassa HOM05D006399 ORTHO05D007988 1.2e-54 217.2 292 43.2
TPR.G34705 Trifolium pratense HOM05D006399 ORTHO05D007988 1.2e-54 217.2 309 39.2
FAN12G2051 Fragaria x ananassa HOM05D006399 ORTHO05D007988 2.1e-54 216.5 292 43.2
QL12p039232 Quercus lobata HOM05D006399 ORTHO05D007988 3.6e-54 215.7 319 40.4
Peaxi162Scf00222g00816 Petunia axillaris HOM05D006399 ORTHO05D007988 6.1e-54 214.9 292 41.8
CAN.G1335.8 Capsicum annuum HOM05D006399 ORTHO05D007988 1.8e-53 213.4 298 41.3
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.1e-52 210.7 307 40.1
PGSC0003DMG400018440 Solanum tuberosum HOM05D006399 ORTHO05D007988 1.9e-52 209.9 300 41.0
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 2.5e-52 209.5 272 43.0
GSVIVG01005153001 Vitis vinifera HOM05D006399 ORTHO05D007988 1.6e-51 206.8 275 41.5
Eucgr.G02484 Eucalyptus grandis HOM05D006399 ORTHO05D007988 2.2e-51 206.5 310 38.4
CDE06G2322 Ceratophyllum demersum HOM05D006399 ORTHO05D007988 2.8e-51 206.1 299 39.1
THA.LOC104808694 Tarenaya hassleriana HOM05D006399 ORTHO05D007988 2.8e-51 206.1 316 39.2
Ah.02g129470 Amaranthus hybridus HOM05D006399 ORTHO05D007988 8.2e-51 204.5 294 38.4
Aa31LG7G8360 Aethionema arabicum HOM05D006399 ORTHO05D007988 1.8e-50 203.4 307 38.8
Sopen05g003560 Solanum pennellii HOM05D006399 ORTHO05D007988 1.8e-50 203.4 299 40.1
Solyc05g007680.1 Solanum lycopersicum HOM05D006399 ORTHO05D007988 9.1e-50 201.1 299 40.1
Atru.chr11.1742 Acer truncatum HOM05D006399 ORTHO05D007988 1.5e-49 200.3 308 40.3
Manes.01G033900 Manihot esculenta HOM05D006399 ORTHO05D007988 3.4e-49 199.1 303 39.3
Thhalv10007591m.g Eutrema salsugineum HOM05D006399 ORTHO05D007988 2.2e-48 196.4 315 37.1
A09p40180 Brassica napus HOM05D006399 ORTHO05D007988 5.0e-48 195.3 307 39.1
PGR102G2002 Punica granatum HOM05D006399 ORTHO05D007988 6.5e-48 194.9 306 39.5
BraA09t39516Z Brassica rapa HOM05D006399 ORTHO05D007988 1.1e-47 194.1 307 38.8
AL1G38940 Arabidopsis lyrata HOM05D006399 ORTHO05D007988 1.4e-47 193.7 315 36.8
BcaC05g26389 Brassica carinata HOM05D006399 ORTHO05D007988 5.5e-47 191.8 312 38.1
C05p24200 Brassica napus HOM05D006399 ORTHO05D007988 5.5e-47 191.8 312 38.1
BolC5t31156H Brassica oleracea HOM05D006399 ORTHO05D007988 5.5e-47 191.8 312 38.1
PGR102G0590 Punica granatum HOM05D006399 ORTHO05D007988 7.2e-47 191.4 308 39.3
EL10Ac6g13248 Beta vulgaris HOM05D006399 ORTHO05D007988 9.4e-47 191.0 321 36.8
Carub.0001s2425 Capsella rubella HOM05D006399 ORTHO05D007988 1.2e-46 190.7 315 36.2
Sp1g22040 Schrenkiella parvula HOM05D006399 ORTHO05D007988 1.6e-46 190.3 316 37.3
AT1G26761 Arabidopsis thaliana HOM05D006399 ORTHO05D007988 1.8e-45 186.8 316 36.1
CARHR025180 Cardamine hirsuta HOM05D006399 ORTHO05D007988 5.1e-45 185.3 306 35.6
ATR0564G327 Amborella trichopoda HOM05D006399 ORTHO05D007988 8.8e-45 184.5 306 37.6
SEGI_38638 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 1.1e-44 184.1 303 36.0
Pp3c5_14870 Physcomitrium patens HOM05D006399 ORTHO05D007988 8.5e-40 167.9 305 32.5
SalBow2G2517 Salvia bowleyana HOM05D006399 ORTHO05D007988 2.9e-32 142.9 169 47.9
AUR62032821 Chenopodium quinoa HOM05D006399 ORTHO05D007988 4.7e-30 135.6 174 48.3
Ciclev10032022m.g Citrus clementina HOM05D006399 ORTHO05D007988 6.1e-30 135.2 213 37.6
Os08g0433300 Oryza sativa ssp. japonica HOM05D006399 ORTHO05D007988 6.7e-29 131.7 176 44.3
Zm00001eb041520 Zea mays HOM05D006399 ORTHO05D007988 4.4e-28 129.0 220 38.2
MSTRG.719 Avicennia marina HOM05D006399 ORTHO05D007988 9.7e-28 127.9 195 39.5
MBI05_g36409_MAGBIO Magnolia biondii HOM05D006399 ORTHO05D007988 7.7e-25 118.2 113 49.6
COL.COLO4_27992 Corchorus olitorius HOM05D006399 ORTHO05D007988 8.5e-24 114.8 88 59.1
Cre06.g273050 Chlamydomonas reinhardtii HOM05D006399 ORTHO05D007988 2.4e-18 96.7 350 26.0
PRCOL_00004009 Prasinoderma coloniale HOM05D006399 ORTHO05D007988 8.5e-16 88.2 176 35.8
TWI75G1459 Tripterygium wilfordii HOM05D006399 ORTHO05D007988 1.2e-14 84.3 80 55.0
CDE02G1760 Ceratophyllum demersum HOM05D006399 ORTHO05D007988 2.3e-13 80.1 97 49.5
SEGI_07124 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 5.4e-10 68.9 189 32.8
AagrBONN_evm.TU.Sc2ySwM_362.1792 Anthoceros agrestis HOM05D006399 ORTHO05D007988 5.6e-07 58.9 99 42.4


User provided reference genes

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