Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 3.1e-36 154.5 71 100.0
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 7.5e-22 106.7 68 69.1
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 3.2e-20 101.3 64 65.6
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 1.2e-19 99.4 64 64.1
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 1.0e-18 96.3 57 66.7
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 1.7e-18 95.5 70 57.1
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 5.1e-18 94.0 68 57.4
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 5.1e-18 94.0 64 60.9
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 6.6e-18 93.6 47 76.6
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 6.6e-18 93.6 47 76.6
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 6.6e-18 93.6 47 76.6
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 6.6e-18 93.6 64 65.6
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 6.6e-18 93.6 70 58.6
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 8.6e-18 93.2 67 59.7
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 8.6e-18 93.2 71 59.2
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 1.1e-17 92.8 47 74.5
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 1.1e-17 92.8 71 57.7
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 2.5e-17 91.7 53 66.0
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 2.5e-17 91.7 53 66.0
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 2.5e-17 91.7 62 61.3
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 3.3e-17 91.3 64 59.4
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 5.6e-17 90.5 68 57.4
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 5.6e-17 90.5 54 61.1
Potri.007G034000 Populus trichocarpa HOM05D007587 ORTHO05D009657 5.6e-17 90.5 66 56.1
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 9.5e-17 89.7 70 52.9
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 9.5e-17 89.7 66 59.1
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 1.2e-16 89.4 67 55.2
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 1.6e-16 89.0 62 58.1
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 4.7e-16 87.4 54 59.3
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 6.2e-16 87.0 47 72.3
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 8.1e-16 86.7 68 57.4
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 1.1e-15 86.3 56 57.1
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 1.4e-15 85.9 54 57.4
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 1.4e-15 85.9 43 69.8
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 1.8e-15 85.5 59 61.0
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 1.8e-15 85.5 69 56.5
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 2.3e-15 85.1 65 55.4
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 1.2e-14 82.8 47 66.0
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 2.0e-14 82.0 62 53.2
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 1.7e-13 79.0 69 47.8
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 2.9e-13 78.2 59 57.6
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 2.9e-13 78.2 59 57.6
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 4.9e-13 77.4 66 48.5
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 1.4e-12 75.9 56 50.0
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 1.4e-12 75.9 68 47.1
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 2.4e-12 75.1 61 50.8
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 2.4e-12 75.1 64 45.3
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 3.2e-12 74.7 60 51.7
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 3.2e-12 74.7 46 56.5
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 3.2e-12 74.7 66 48.5
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 3.2e-12 74.7 67 47.8
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 7.1e-12 73.6 55 45.5
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 7.1e-12 73.6 43 60.5
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 9.2e-12 73.2 51 52.9
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 1.2e-11 72.8 64 43.8
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 2.1e-11 72.0 53 52.8
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 2.7e-11 71.6 59 45.8
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 3.5e-11 71.2 52 48.1
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 4.6e-11 70.9 68 45.6
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 4.6e-11 70.9 65 43.1
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 4.6e-11 70.9 48 52.1
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 4.6e-11 70.9 59 47.5
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 7.8e-11 70.1 53 50.9
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 1.3e-10 69.3 60 46.7
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 1.3e-10 69.3 58 48.3
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 1.3e-10 69.3 61 47.5
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.3e-10 69.3 53 49.1
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 1.7e-10 68.9 51 49.0
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 2.3e-10 68.6 43 53.5
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 3.9e-10 67.8 65 47.7
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 3.9e-10 67.8 44 52.3
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 5.1e-10 67.4 62 45.2
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 5.1e-10 67.4 43 55.8
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 6.6e-10 67.0 62 40.3
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 6.6e-10 67.0 65 46.2
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 6.6e-10 67.0 52 51.9
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 6.6e-10 67.0 52 51.9
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 6.6e-10 67.0 43 51.2
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 8.6e-10 66.6 62 46.8
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.1e-09 66.2 58 44.8
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.1e-09 66.2 49 59.2
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 1.5e-09 65.9 61 44.3
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 2.5e-09 65.1 63 46.0
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 4.3e-09 64.3 53 43.4
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 4.3e-09 64.3 53 43.4
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 4.3e-09 64.3 53 43.4
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 4.3e-09 64.3 44 50.0
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 7.3e-09 63.5 61 44.3
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 9.5e-09 63.2 68 38.2
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 9.5e-09 63.2 57 45.6
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 1.2e-08 62.8 42 47.6
CiPaw.01G029300 Carya illinoinensis HOM05D007587 ORTHO05D009657 1.8e-07 58.9 33 72.7
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 3.1e-07 58.2 48 52.1


User provided reference genes

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