Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A96T46 Lonicera japonica HOM05D000219 ORTHO05D004649 4.0e-33 144.1 67 100.0
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 9.0e-09 63.2 45 64.4
PGSC0003DMG400020961 Solanum tuberosum HOM05D000219 ORTHO05D004649 1.2e-08 62.8 67 49.3
Carub.0004s1368 Capsella rubella HOM05D000219 ORTHO05D004649 1.5e-08 62.4 45 64.4
Cc07_g16490 Coffea canephora HOM05D000219 ORTHO05D004649 2.0e-08 62.0 45 62.2
vmacro12890 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 2.0e-08 62.0 45 62.2
GSVIVG01022253001 Vitis vinifera HOM05D000219 ORTHO05D004649 2.0e-08 62.0 45 64.4
Cpa.g.c44268 Carica papaya HOM05D000219 ORTHO05D004649 2.6e-08 61.6 42 66.7
Lj8A365T11 Lonicera japonica HOM05D000219 ORTHO05D004649 2.6e-08 61.6 42 66.7
Oeu027201.4 Olea europaea HOM05D000219 ORTHO05D004649 2.6e-08 61.6 45 64.4
Oeu035604.1 Olea europaea HOM05D000219 ORTHO05D004649 2.6e-08 61.6 45 64.4
Potri.002G233300 Populus trichocarpa HOM05D000219 ORTHO05D004649 2.6e-08 61.6 45 62.2
Sabra02G0178000 Salix brachista HOM05D000219 ORTHO05D004649 2.6e-08 61.6 45 62.2
TAR628G0592 Trochodendron aralioides HOM05D000219 ORTHO05D004649 2.6e-08 61.6 54 51.9
Eucgr.H04885 Eucalyptus grandis HOM05D000219 ORTHO05D004649 3.4e-08 61.2 45 62.2
Lj7C160G16 Lonicera japonica HOM05D000219 ORTHO05D004649 3.4e-08 61.2 42 66.7
Rhsim10G0148200 Rhododendron simsii HOM05D000219 ORTHO05D004649 3.4e-08 61.2 42 66.7
vmacro14893 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 3.4e-08 61.2 45 62.2
SGA_v2.0_scaffold2G01286 Striga asiatica HOM05D000219 ORTHO05D004649 4.5e-08 60.8 42 66.7
CSS0031787 Camellia sinensis var. sinensis HOM05D000219 ORTHO05D004649 5.8e-08 60.5 42 64.3
Carub.0004s1193 Capsella rubella HOM05D000219 ORTHO05D004649 5.8e-08 60.5 45 62.2
CDE06G2407 Ceratophyllum demersum HOM05D000219 ORTHO05D004649 5.8e-08 60.5 45 62.2
TAR625G1522 Trochodendron aralioides HOM05D000219 ORTHO05D004649 5.8e-08 60.5 42 64.3
AT2G32320 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 7.6e-08 60.1 45 62.2
Dinv19467 Davidia involucrata HOM05D000219 ORTHO05D004649 7.6e-08 60.1 42 64.3
MBI04_g33333_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 7.6e-08 60.1 45 60.0
MBI05_g03455_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 7.6e-08 60.1 45 60.0
Nn1g05995 Nelumbo nucifera HOM05D000219 ORTHO05D004649 7.6e-08 60.1 45 60.0
Carub.0004s1289 Capsella rubella HOM05D000219 ORTHO05D004649 1.0e-07 59.7 45 57.8
CARHR008820 Cardamine hirsuta HOM05D000219 ORTHO05D004649 1.0e-07 59.7 45 57.8
Ciclev10027573m.g Citrus clementina HOM05D000219 ORTHO05D004649 1.0e-07 59.7 42 69.0
Prupe.1G573900 Prunus persica HOM05D000219 ORTHO05D004649 1.0e-07 59.7 45 62.2
SalBow6G5746 Salvia bowleyana HOM05D000219 ORTHO05D004649 1.0e-07 59.7 42 66.7
THA.LOC104800903 Tarenaya hassleriana HOM05D000219 ORTHO05D004649 1.0e-07 59.7 42 64.3
TAR628G0698 Trochodendron aralioides HOM05D000219 ORTHO05D004649 1.0e-07 59.7 42 64.3
BcaB02g10403 Brassica carinata HOM05D000219 ORTHO05D004649 1.3e-07 59.3 45 57.8
BcaC02g11270 Brassica carinata HOM05D000219 ORTHO05D004649 1.3e-07 59.3 45 57.8
A03p17780 Brassica napus HOM05D000219 ORTHO05D004649 1.3e-07 59.3 45 57.8
A05p13880 Brassica napus HOM05D000219 ORTHO05D004649 1.3e-07 59.3 45 57.8
C03p20860 Brassica napus HOM05D000219 ORTHO05D004649 1.3e-07 59.3 45 57.8
C04p18270 Brassica napus HOM05D000219 ORTHO05D004649 1.3e-07 59.3 45 57.8
BolC3t14438H Brassica oleracea HOM05D000219 ORTHO05D004649 1.3e-07 59.3 45 57.8
BolC4t23384H Brassica oleracea HOM05D000219 ORTHO05D004649 1.3e-07 59.3 45 57.8
BraA03t11042Z Brassica rapa HOM05D000219 ORTHO05D004649 1.3e-07 59.3 45 57.8
BraA05t20324Z Brassica rapa HOM05D000219 ORTHO05D004649 1.3e-07 59.3 45 57.8
Thhalv10016524m.g Eutrema salsugineum HOM05D000219 ORTHO05D004649 1.3e-07 59.3 45 57.8
Sp4g14010 Schrenkiella parvula HOM05D000219 ORTHO05D004649 1.3e-07 59.3 45 57.8
Sc05g0007990 Simmondsia chinensis HOM05D000219 ORTHO05D004649 1.3e-07 59.3 45 60.0
TWI79G1233 Tripterygium wilfordii HOM05D000219 ORTHO05D004649 1.3e-07 59.3 42 64.3
AL4G26840 Arabidopsis lyrata HOM05D000219 ORTHO05D004649 1.7e-07 58.9 45 57.8
FAN26G0146 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.7e-07 58.9 45 60.0
Migut.B00934 Erythranthe guttata HOM05D000219 ORTHO05D004649 2.2e-07 58.5 48 50.0
Gohir.A05G170300 Gossypium hirsutum HOM05D000219 ORTHO05D004649 2.2e-07 58.5 42 64.3
Gohir.D05G173400 Gossypium hirsutum HOM05D000219 ORTHO05D004649 2.2e-07 58.5 42 64.3
Gorai.009G178600 Gossypium raimondii HOM05D000219 ORTHO05D004649 2.2e-07 58.5 42 64.3
Manes.11G020000 Manihot esculenta HOM05D000219 ORTHO05D004649 2.2e-07 58.5 42 64.3
PGR102G3329 Punica granatum HOM05D000219 ORTHO05D004649 2.2e-07 58.5 42 61.9
Duzib235G0760 Durio zibethinus HOM05D000219 ORTHO05D004649 2.9e-07 58.2 45 57.8
RcHm_v2.0_Chr2g0117491 Rosa chinensis HOM05D000219 ORTHO05D004649 2.9e-07 58.2 42 64.3
unitig_899.g14613 Utricularia gibba HOM05D000219 ORTHO05D004649 2.9e-07 58.2 42 61.9
CsaV3_6G042230 Cucumis sativus L. HOM05D000219 ORTHO05D004649 3.8e-07 57.8 45 62.2
Nitab4.5_0000184g0150 Nicotiana tabacum HOM05D000219 ORTHO05D004649 3.8e-07 57.8 42 59.5
Nitab4.5_0009050g0040 Nicotiana tabacum HOM05D000219 ORTHO05D004649 3.8e-07 57.8 42 59.5
PSO782G0604 Papaver somniferum HOM05D000219 ORTHO05D004649 3.8e-07 57.8 45 53.3
Hund21266 Selenicereus undatus HOM05D000219 ORTHO05D004649 3.8e-07 57.8 45 55.6
Solyc04g051600.4 Solanum lycopersicum HOM05D000219 ORTHO05D004649 3.8e-07 57.8 42 59.5
PGSC0003DMG400031193 Solanum tuberosum HOM05D000219 ORTHO05D004649 3.8e-07 57.8 42 59.5
CAN.G1235.19 Capsicum annuum HOM05D000219 ORTHO05D004649 4.9e-07 57.4 42 61.9
FvH4_2g15830 Fragaria vesca HOM05D000219 ORTHO05D004649 4.9e-07 57.4 42 64.3
FAN15G1293 Fragaria x ananassa HOM05D000219 ORTHO05D004649 4.9e-07 57.4 42 64.3
FAN20G1304 Fragaria x ananassa HOM05D000219 ORTHO05D004649 4.9e-07 57.4 42 64.3
FAN23G1549 Fragaria x ananassa HOM05D000219 ORTHO05D004649 4.9e-07 57.4 44 59.1
FAN24G0946 Fragaria x ananassa HOM05D000219 ORTHO05D004649 4.9e-07 57.4 42 64.3
ClCG01G015950 Citrullus lanatus HOM05D000219 ORTHO05D004649 6.5e-07 57.0 42 64.3
FvH4_1g22971 Fragaria vesca HOM05D000219 ORTHO05D004649 6.5e-07 57.0 45 57.8
Lj5g0005884 Lotus japonicus HOM05D000219 ORTHO05D004649 6.5e-07 57.0 45 57.8
Lj6g0002222 Lotus japonicus HOM05D000219 ORTHO05D004649 6.5e-07 57.0 45 57.8
Lalb_Chr11g0075091 Lupinus albus HOM05D000219 ORTHO05D004649 6.5e-07 57.0 45 55.6
Sed0023684 Sechium edule HOM05D000219 ORTHO05D004649 6.5e-07 57.0 42 64.3
Zm00001eb294000 Zea mays HOM05D000219 ORTHO05D004649 6.5e-07 57.0 44 59.1
Atru.chr10.1102 Acer truncatum HOM05D000219 ORTHO05D004649 8.4e-07 56.6 43 62.8
MSTRG.2524 Avicennia marina HOM05D000219 ORTHO05D004649 8.4e-07 56.6 42 61.9
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 8.4e-07 56.6 42 64.3
Medtr7g115250 Medicago truncatula HOM05D000219 ORTHO05D004649 8.4e-07 56.6 45 55.6
TPR.G6992 Trifolium pratense HOM05D000219 ORTHO05D004649 8.4e-07 56.6 45 55.6
COL.COLO4_16836 Corchorus olitorius HOM05D000219 ORTHO05D004649 1.1e-06 56.2 42 61.9
MELO3C007464.2 Cucumis melo HOM05D000219 ORTHO05D004649 1.1e-06 56.2 42 61.9
Psat0s1144g0040 Pisum sativum HOM05D000219 ORTHO05D004649 1.1e-06 56.2 45 55.6
Psat7g054840 Pisum sativum HOM05D000219 ORTHO05D004649 1.1e-06 56.2 45 55.6
Sopen04g022970 Solanum pennellii HOM05D000219 ORTHO05D004649 1.1e-06 56.2 42 59.5
Thecc.06G220500 Theobroma cacao HOM05D000219 ORTHO05D004649 1.1e-06 56.2 45 57.8
HPP92_021534 Vanilla planifolia HOM05D000219 ORTHO05D004649 1.1e-06 56.2 42 59.5
HPP92_021547 Vanilla planifolia HOM05D000219 ORTHO05D004649 1.1e-06 56.2 42 59.5
Actinidia05378 Actinidia chinensis HOM05D000219 ORTHO05D004649 1.4e-06 55.8 42 59.5
AagrBONN_evm.TU.Sc2ySwM_117.2004 Anthoceros agrestis HOM05D000219 ORTHO05D004649 1.4e-06 55.8 43 51.2
CANSAT64G2196 Cannabis sativa HOM05D000219 ORTHO05D004649 1.4e-06 55.8 42 61.9
HanXRQChr10g0311141 Helianthus annuus HOM05D000219 ORTHO05D004649 1.4e-06 55.8 42 64.3
Lsat_1_v5_gn_7_9060 Lactuca sativa HOM05D000219 ORTHO05D004649 1.4e-06 55.8 42 61.9
Peaxi162Scf00106g01118 Petunia axillaris HOM05D000219 ORTHO05D004649 1.4e-06 55.8 42 61.9
AT2G31580 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 1.9e-06 55.5 45 53.3
DCAR_027131 Daucus carota HOM05D000219 ORTHO05D004649 1.9e-06 55.5 42 59.5
MD05G1030700 Malus domestica HOM05D000219 ORTHO05D004649 1.9e-06 55.5 42 61.9
SHI31714 Sapria himalayana HOM05D000219 ORTHO05D004649 1.9e-06 55.5 30 80.0
Ca_09426_v3 Cicer arietinum L. HOM05D000219 ORTHO05D004649 2.5e-06 55.1 45 53.3
FAN27G2048 Fragaria x ananassa HOM05D000219 ORTHO05D004649 2.5e-06 55.1 42 61.9
Atru.chr10.1696 Acer truncatum HOM05D000219 ORTHO05D004649 3.2e-06 54.7 38 65.8
Cfa002771 Carpinus fangiana HOM05D000219 ORTHO05D004649 3.2e-06 54.7 43 62.8
CBR_g11164 Chara braunii HOM05D000219 ORTHO05D004649 3.2e-06 54.7 45 57.8
Glyma.10G001600 Glycine max HOM05D000219 ORTHO05D004649 3.2e-06 54.7 45 53.3
Glyma.16G091600 Glycine max HOM05D000219 ORTHO05D004649 3.2e-06 54.7 45 53.3
Glyma.16G117567 Glycine max HOM05D000219 ORTHO05D004649 3.2e-06 54.7 45 53.3
HanXRQChr10g0318971 Helianthus annuus HOM05D000219 ORTHO05D004649 3.2e-06 54.7 42 61.9
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 3.2e-06 54.7 45 51.1
Phvul.010G125700 Phaseolus vulgaris HOM05D000219 ORTHO05D004649 3.2e-06 54.7 45 53.3
VMungo0720G2488 Vigna mungo HOM05D000219 ORTHO05D004649 3.2e-06 54.7 45 53.3
arahy.Tifrunner.gnm1.ann1.M2QW19 Arachis hypogaea HOM05D000219 ORTHO05D004649 4.2e-06 54.3 45 51.1
Os05g0535500 Oryza sativa ssp. japonica HOM05D000219 ORTHO05D004649 4.2e-06 54.3 41 58.5
ATR0322G032 Amborella trichopoda HOM05D000219 ORTHO05D004649 5.5e-06 53.9 45 53.3
arahy.Tifrunner.gnm1.ann1.V7J6Z4 Arachis hypogaea HOM05D000219 ORTHO05D004649 5.5e-06 53.9 45 51.1
Cre13.g581550 Chlamydomonas reinhardtii HOM05D000219 ORTHO05D004649 5.5e-06 53.9 43 53.5
QL06p031679 Quercus lobata HOM05D000219 ORTHO05D004649 5.5e-06 53.9 43 62.8
EL10Ac8g20632 Beta vulgaris HOM05D000219 ORTHO05D004649 7.1e-06 53.5 42 57.1
AUR62010269 Chenopodium quinoa HOM05D000219 ORTHO05D004649 7.1e-06 53.5 42 59.5
AUR62013249 Chenopodium quinoa HOM05D000219 ORTHO05D004649 7.1e-06 53.5 42 59.5
AUR62016924 Chenopodium quinoa HOM05D000219 ORTHO05D004649 9.3e-06 53.1 42 57.1
Haze_25064 Corylus avellana HOM05D000219 ORTHO05D004649 9.3e-06 53.1 43 60.5
Hma1.2p1_0252F.1_g102800 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 9.3e-06 53.1 42 57.1
Hma1.2p1_0975F.1_g243180 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 9.3e-06 53.1 42 57.1
PSO063G1486 Papaver somniferum HOM05D000219 ORTHO05D004649 9.3e-06 53.1 45 48.9


User provided reference genes

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