Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 6.1e-89 330.9 176 100.0
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 2.8e-25 119.4 200 42.5
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 4.0e-24 115.5 148 51.4
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 5.2e-24 115.2 173 45.7
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 1.2e-23 114.0 189 43.4
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.2e-23 114.0 157 47.1
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.5e-23 113.6 190 43.2
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 9.9e-23 110.9 153 48.4
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 3.8e-22 109.0 170 47.1
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 3.8e-22 109.0 145 53.1
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 3.8e-22 109.0 169 47.9
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 4.9e-22 108.6 199 42.2
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 4.9e-22 108.6 170 46.5
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 1.4e-21 107.1 173 45.1
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.4e-21 107.1 167 46.1
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.9e-21 106.7 199 41.7
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 2.4e-21 106.3 169 47.3
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 7.1e-21 104.8 171 45.6
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 7.1e-21 104.8 188 42.6
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 9.3e-21 104.4 174 43.1
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.2e-20 104.0 164 46.3
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 1.2e-20 104.0 184 42.4
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.1e-20 103.2 186 41.9
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 2.7e-20 102.8 169 45.6
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 4.6e-20 102.1 165 44.8
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 6.0e-20 101.7 165 46.1
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 2.3e-19 99.8 192 39.6
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 2.3e-19 99.8 194 41.2
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 3.0e-19 99.4 170 45.9
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 3.0e-19 99.4 150 46.0
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 3.0e-19 99.4 150 46.0
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 3.0e-19 99.4 165 45.5
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 3.9e-19 99.0 177 42.4
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 6.6e-19 98.2 169 43.8
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 6.6e-19 98.2 188 43.6
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 6.6e-19 98.2 164 44.5
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 8.7e-19 97.8 179 41.3
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 1.9e-18 96.7 171 39.2
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.9e-18 96.7 199 40.7
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 2.5e-18 96.3 173 45.1
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 2.5e-18 96.3 144 45.8
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 5.6e-18 95.1 175 40.6
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 5.6e-18 95.1 160 43.1
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 5.6e-18 95.1 160 43.1
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 5.6e-18 95.1 162 45.1
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 5.6e-18 95.1 167 41.9
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 1.3e-17 94.0 187 41.2
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 1.3e-17 94.0 188 41.0
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.6e-17 93.6 156 46.8
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 1.6e-17 93.6 171 41.5
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 2.1e-17 93.2 171 43.9
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 2.8e-17 92.8 168 43.5
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.6e-17 92.4 160 43.1
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 4.8e-17 92.0 171 41.5
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 4.8e-17 92.0 193 42.5
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 4.8e-17 92.0 185 40.0
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 6.2e-17 91.7 170 41.2
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 6.2e-17 91.7 184 42.4
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 1.1e-16 90.9 169 40.8
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 1.1e-16 90.9 158 41.8
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.1e-16 90.9 144 43.8
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.4e-16 90.5 155 45.2
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 1.4e-16 90.5 157 42.0
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 1.8e-16 90.1 162 42.6
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 1.8e-16 90.1 171 39.8
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 1.8e-16 90.1 194 39.7
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 4.0e-16 89.0 178 42.7
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 5.3e-16 88.6 171 39.8
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 5.3e-16 88.6 164 40.9
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 6.9e-16 88.2 188 40.4
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 9.0e-16 87.8 138 44.2
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 9.0e-16 87.8 195 38.5
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 1.2e-15 87.4 150 40.7
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 1.5e-15 87.0 169 40.8
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 2.0e-15 86.7 187 40.6
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 2.0e-15 86.7 188 40.4
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.6e-15 86.3 151 44.4
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 2.6e-15 86.3 153 42.5
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.4e-15 85.9 171 41.5
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 3.4e-15 85.9 171 41.5
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 3.4e-15 85.9 185 40.5
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 4.5e-15 85.5 126 45.2
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 5.8e-15 85.1 167 38.9
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.6e-15 84.7 182 40.1
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.6e-15 84.7 152 44.1
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 7.6e-15 84.7 163 43.6
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 1.7e-14 83.6 168 41.1
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.7e-14 83.6 156 41.7
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 2.2e-14 83.2 146 40.4
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.2e-14 83.2 160 41.2
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 2.2e-14 83.2 185 37.3
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 3.8e-14 82.4 163 41.7
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.4e-14 81.6 153 41.2
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 6.4e-14 81.6 174 39.7
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.1e-13 80.9 162 41.4
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 1.1e-13 80.9 160 40.6
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.1e-13 80.9 162 41.4
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 1.1e-13 80.9 160 40.6
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.1e-13 80.9 162 41.4
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 1.1e-13 80.9 160 40.6
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 1.4e-13 80.5 126 43.7
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 1.9e-13 80.1 129 42.6
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 1.9e-13 80.1 159 41.5
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 2.4e-13 79.7 160 40.6
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.4e-13 79.7 152 42.8
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.4e-13 79.7 167 38.9
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 4.2e-13 79.0 160 40.0
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 4.2e-13 79.0 185 37.8
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 4.2e-13 79.0 127 41.7
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 5.4e-13 78.6 144 40.3
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 5.4e-13 78.6 143 39.2
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 5.4e-13 78.6 162 40.1
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 5.4e-13 78.6 162 40.1
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 5.4e-13 78.6 174 37.9
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 7.1e-13 78.2 170 40.0
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 7.1e-13 78.2 160 40.0
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 9.3e-13 77.8 135 41.5
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 9.3e-13 77.8 144 40.3
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 9.3e-13 77.8 139 37.4
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 1.2e-12 77.4 127 43.3
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.6e-12 77.0 198 35.9
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 2.1e-12 76.6 143 42.0
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 2.7e-12 76.3 167 37.1
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 3.5e-12 75.9 153 39.2
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 4.6e-12 75.5 121 43.0
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 1.0e-11 74.3 190 34.7
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 1.3e-11 73.9 134 41.0
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 1.3e-11 73.9 134 41.0
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 1.3e-11 73.9 160 38.8
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 1.8e-11 73.6 145 40.0
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 1.8e-11 73.6 145 40.0
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 3.0e-11 72.8 167 37.1
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 3.9e-11 72.4 120 45.0
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 8.7e-11 71.2 134 40.3
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 8.7e-11 71.2 172 37.2
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 8.7e-11 71.2 147 36.7
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 1.5e-10 70.5 170 36.5
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 1.9e-10 70.1 189 35.4
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 2.5e-10 69.7 184 37.0
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 4.3e-10 68.9 169 39.6
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 4.3e-10 68.9 154 40.3
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 5.6e-10 68.6 155 40.6
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.3e-09 67.4 198 34.3
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 2.1e-09 66.6 125 42.4
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 2.8e-09 66.2 132 39.4
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 4.8e-09 65.5 134 38.8
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 6.2e-09 65.1 94 46.8
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 6.2e-09 65.1 172 33.7
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 8.1e-09 64.7 165 34.5
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 4.0e-08 62.4 145 36.6
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 6.9e-08 61.6 155 40.0
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.6e-07 59.7 169 33.1
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 7.6e-07 58.2 94 43.6
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 7.6e-07 58.2 142 33.8
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 9.9e-07 57.8 128 34.4
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.3e-06 57.4 187 32.6
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.3e-06 57.4 176 33.0


User provided reference genes

Program Settings