Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 3.0e-159 565.1 279 100.0
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.6e-107 393.3 276 71.7
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 6.2e-104 381.3 258 74.0
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 1.2e-102 377.1 279 67.4
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 1.3e-101 373.6 261 69.7
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 8.4e-101 370.9 276 68.5
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 1.4e-100 370.2 256 71.5
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 2.4e-100 369.4 258 72.1
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 2.7e-99 365.9 256 71.9
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 6.0e-99 364.8 299 62.5
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 1.3e-98 363.6 279 65.2
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 3.0e-98 362.5 253 70.4
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 1.5e-97 360.1 278 65.8
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 7.4e-97 357.8 256 68.4
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 1.6e-96 356.7 257 68.9
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 2.1e-96 356.3 256 67.2
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 1.4e-95 353.6 246 70.3
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 5.3e-95 351.7 246 70.7
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 5.3e-95 351.7 254 69.7
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 6.9e-95 351.3 238 72.3
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 7.6e-94 347.8 263 64.6
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 1.3e-93 347.1 254 67.3
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 2.9e-93 345.9 257 66.1
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 3.8e-93 345.5 271 64.6
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 4.9e-93 345.1 266 63.9
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 6.5e-93 344.7 253 68.0
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 1.4e-92 343.6 273 63.7
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 2.1e-91 339.7 270 63.7
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 6.0e-91 338.2 256 66.0
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 1.0e-90 337.4 257 63.8
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 6.7e-90 334.7 271 61.3
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 6.7e-90 334.7 230 70.9
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 3.3e-89 332.4 251 65.7
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 7.4e-89 331.3 276 62.0
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 2.8e-88 329.3 279 58.8
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 2.8e-88 329.3 257 63.0
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 2.8e-88 329.3 263 63.1
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 3.7e-88 328.9 278 59.7
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 4.8e-88 328.6 275 60.7
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 6.3e-88 328.2 271 60.1
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 6.3e-88 328.2 289 59.9
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 8.2e-88 327.8 275 60.7
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 1.4e-87 327.0 276 61.6
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 3.1e-87 325.9 257 62.3
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 5.3e-87 325.1 253 59.7
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 9.0e-87 324.3 253 62.1
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 1.5e-86 323.6 270 59.3
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 3.4e-86 322.4 254 65.4
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.5e-86 322.0 264 62.1
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 4.5e-86 322.0 239 66.9
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.0e-85 320.9 264 62.5
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 2.2e-85 319.7 246 64.6
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 8.5e-85 317.8 254 64.6
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.4e-84 317.0 261 59.8
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 2.5e-84 316.2 270 58.9
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 3.2e-84 315.8 266 59.4
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 4.2e-84 315.5 272 58.8
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 4.2e-84 315.5 273 58.6
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 4.2e-84 315.5 273 58.6
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 5.5e-84 315.1 273 61.2
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 7.2e-84 314.7 287 59.9
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 7.2e-84 314.7 271 61.3
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 7.2e-84 314.7 252 62.3
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 1.2e-83 313.9 252 63.5
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.6e-83 313.5 272 57.7
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 3.6e-83 312.4 279 59.9
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 6.1e-83 311.6 251 58.6
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 5.7e-81 305.1 256 59.8
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 2.2e-80 303.1 262 60.7
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 5.3e-79 298.5 239 61.9
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 3.4e-78 295.8 220 68.6
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 5.9e-78 295.0 251 61.4
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 2.2e-77 293.1 265 58.9
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 2.9e-77 292.7 272 57.0
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 1.4e-76 290.4 265 58.9
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 4.6e-75 285.4 254 57.1
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 6.1e-75 285.0 261 58.6
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 3.9e-74 282.3 242 61.2
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 4.4e-73 278.9 220 65.0
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 4.4e-73 278.9 259 56.0
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 1.4e-71 273.9 250 56.8
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 2.4e-71 273.1 383 41.0
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 1.5e-70 270.4 254 52.4
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 6.5e-69 265.0 209 62.7
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 9.4e-68 261.2 207 65.7
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 1.6e-67 260.4 249 51.4
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 2.2e-64 250.0 194 61.3
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 4.8e-64 248.8 154 75.3
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 1.4e-63 247.3 242 55.4
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 2.4e-63 246.5 226 57.1
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 4.5e-62 242.3 255 51.8
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.5e-60 235.3 265 51.3
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.5e-60 235.3 265 51.3
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 8.8e-58 228.0 308 40.3
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 1.8e-55 220.3 245 50.2
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 2.0e-54 216.9 269 47.6
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 2.9e-53 213.0 158 66.5
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 8.0e-51 204.9 166 62.0
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 1.8e-50 203.8 165 61.8
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 5.2e-50 202.2 192 57.8
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 4.8e-48 195.7 161 60.9
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 1.1e-47 194.5 159 62.3
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 1.1e-44 184.5 127 69.3
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 4.2e-44 182.6 141 63.8
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 1.8e-42 177.2 140 61.4
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 1.8e-42 177.2 139 61.9
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 2.3e-42 176.8 167 54.5
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 1.2e-41 174.5 123 68.3
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 1.5e-41 174.1 140 60.7
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 3.4e-41 172.9 206 46.1
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 8.3e-40 168.3 116 67.2
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 3.1e-39 166.4 131 61.1
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 4.5e-38 162.5 140 61.4
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 5.7e-33 145.6 108 64.8
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 5.4e-31 139.0 141 53.9
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 7.0e-31 138.7 95 69.5
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 2.0e-30 137.1 121 57.9
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 5.9e-30 135.6 296 32.4
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 1.9e-28 130.6 244 35.7
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 9.5e-28 128.3 119 54.6
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 6.8e-26 122.1 313 30.0
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 2.4e-23 113.6 101 59.4
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 9.2e-23 111.7 97 58.8
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 1.6e-22 110.9 100 54.0
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 3.5e-22 109.8 167 39.5
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 3.5e-22 109.8 73 69.9
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 1.5e-20 104.4 125 47.2
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 6.2e-19 99.0 58 75.9
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 6.2e-19 99.0 76 56.6
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 5.4e-15 85.9 61 65.6
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 8.9e-10 68.6 64 51.6
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 1.3e-08 64.7 36 80.6
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 1.9e-07 60.8 36 75.0


User provided reference genes

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