Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 7.6e-73 277.7 220 100.0
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 8.3e-35 151.4 215 67.4
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 7.0e-34 148.3 215 67.0
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 1.2e-33 147.5 220 63.2
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 2.0e-33 146.7 227 60.4
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 2.0e-33 146.7 227 60.4
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 2.0e-33 146.7 227 60.4
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 2.7e-33 146.4 211 66.8
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 2.7e-33 146.4 227 59.5
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 3.5e-33 146.0 214 58.4
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 1.0e-32 144.4 227 60.4
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 3.8e-32 142.5 226 58.4
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 5.0e-32 142.1 217 60.8
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 8.5e-32 141.4 221 63.3
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 1.1e-31 141.0 222 56.8
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 1.9e-31 140.2 215 55.3
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 5.5e-31 138.7 222 62.2
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 7.2e-31 138.3 218 57.3
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 9.5e-31 137.9 213 59.2
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 1.2e-30 137.5 223 59.6
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 1.6e-30 137.1 216 63.0
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 2.1e-30 136.7 221 57.0
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 2.1e-30 136.7 217 58.5
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 2.8e-30 136.3 212 58.0
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 2.8e-30 136.3 218 61.0
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 2.8e-30 136.3 210 59.5
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 3.6e-30 136.0 215 55.8
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 8.0e-30 134.8 218 58.7
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 1.4e-29 134.0 210 66.2
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 1.8e-29 133.7 218 63.3
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 1.8e-29 133.7 217 62.7
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.8e-29 133.7 144 57.6
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 2.3e-29 133.3 217 53.5
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 4.0e-29 132.5 220 55.9
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 5.2e-29 132.1 211 59.2
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 6.8e-29 131.7 223 53.4
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 8.8e-29 131.3 211 58.8
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 1.2e-28 131.0 213 54.9
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 1.2e-28 131.0 218 56.9
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 2.0e-28 130.2 212 63.7
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 2.0e-28 130.2 161 77.0
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 2.6e-28 129.8 215 50.2
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 3.4e-28 129.4 216 53.2
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 3.4e-28 129.4 214 55.1
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 3.4e-28 129.4 215 55.8
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 4.4e-28 129.0 220 57.3
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 4.4e-28 129.0 218 51.4
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 4.4e-28 129.0 211 57.3
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 4.4e-28 129.0 216 57.4
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 5.7e-28 128.6 216 57.9
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 5.7e-28 128.6 218 53.7
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 7.5e-28 128.3 142 57.0
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 7.5e-28 128.3 217 60.8
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 9.8e-28 127.9 221 53.4
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 9.8e-28 127.9 219 56.6
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 1.3e-27 127.5 219 54.8
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 2.2e-27 126.7 155 68.4
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 3.7e-27 125.9 213 52.6
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 3.7e-27 125.9 171 73.1
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 4.9e-27 125.6 217 59.4
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 6.3e-27 125.2 210 55.7
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 8.3e-27 124.8 219 54.3
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 8.3e-27 124.8 151 64.2
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 1.4e-26 124.0 216 53.7
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 1.4e-26 124.0 221 57.5
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 1.4e-26 124.0 221 52.0
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 3.1e-26 122.9 218 51.4
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 5.4e-26 122.1 214 62.6
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 1.6e-25 120.6 217 56.7
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 2.7e-25 119.8 143 53.8
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 2.7e-25 119.8 219 53.0
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 2.7e-25 119.8 217 54.4
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 3.5e-25 119.4 220 47.7
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 4.5e-25 119.0 216 57.9
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 7.8e-25 118.2 198 59.6
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 1.0e-24 117.9 215 50.7
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 2.3e-24 116.7 213 50.7
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 5.0e-24 115.5 148 52.0
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 5.0e-24 115.5 146 52.7
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 1.1e-23 114.4 143 47.6
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 1.5e-23 114.0 210 55.7
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 3.3e-23 112.8 150 50.7
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 3.3e-23 112.8 154 76.6
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 4.3e-23 112.5 153 51.6
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 5.6e-23 112.1 162 59.9
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 1.0e-21 107.8 216 50.5
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 1.0e-21 107.8 129 54.3
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 1.7e-19 100.5 149 48.3
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 2.9e-19 99.8 127 59.1
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 1.1e-18 97.8 161 55.3
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 1.8e-18 97.1 89 59.6
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 2.4e-18 96.7 113 53.1
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 5.4e-18 95.5 76 64.5
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 8.6e-16 88.2 161 62.7
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.1e-15 87.8 58 77.6
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 2.5e-15 86.7 95 50.5
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 4.3e-15 85.9 95 50.5
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 5.6e-15 85.5 95 50.5
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 7.3e-15 85.1 216 34.7
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 1.2e-14 84.3 86 53.5
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 1.6e-14 84.0 61 67.2
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 4.7e-14 82.4 58 74.1
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 2.0e-12 77.0 100 45.0
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 1.3e-11 74.3 66 53.0
RcHm_v2.0_Chr4g0429151 Rosa chinensis HOM05D007100 ORTHO05D008958 1.9e-10 70.5 51 68.6
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 1.6e-09 67.4 110 43.6
Sabra06G0199900 Salix brachista HOM05D007100 ORTHO05D008958 2.3e-08 63.5 105 61.0
Gohir.A07G028825 Gossypium hirsutum HOM05D007100 ORTHO05D008958 1.1e-07 61.2 105 62.9
Gohir.D07G032851 Gossypium hirsutum HOM05D007100 ORTHO05D008958 1.1e-07 61.2 105 54.3
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.5e-07 60.8 109 66.1


User provided reference genes

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