Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 3.5e-134 481.5 220 100.0
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 5.2e-114 414.5 218 83.9
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 1.3e-112 409.8 216 82.4
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 2.2e-112 409.1 218 82.1
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 5.4e-111 404.4 218 80.3
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 5.4e-111 404.4 218 80.3
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 9.2e-111 403.7 218 79.4
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.2e-110 403.3 218 79.8
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 2.1e-110 402.5 218 80.3
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 7.8e-110 400.6 218 79.4
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.3e-109 399.8 218 78.9
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 1.3e-109 399.8 218 78.9
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 8.6e-109 397.1 218 78.9
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 2.5e-108 395.6 218 79.8
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 4.3e-108 394.8 218 79.4
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 5.6e-108 394.4 216 80.1
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 5.6e-108 394.4 218 79.4
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 7.3e-108 394.0 218 79.8
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 9.6e-108 393.7 216 79.6
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 2.1e-107 392.5 217 79.3
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 2.1e-107 392.5 218 78.0
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 2.1e-107 392.5 218 77.1
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 6.2e-107 391.0 218 78.4
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 8.1e-107 390.6 213 79.8
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 1.8e-106 389.4 218 78.0
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 3.1e-106 388.7 218 78.4
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 8.9e-106 387.1 218 76.1
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 3.4e-105 385.2 214 78.0
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 7.6e-105 384.0 218 75.7
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 7.6e-105 384.0 218 76.6
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 7.6e-105 384.0 218 76.1
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 1.3e-104 383.3 216 79.6
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 1.7e-104 382.9 271 64.6
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 2.2e-104 382.5 218 77.5
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 8.4e-104 380.6 218 74.3
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 8.4e-104 380.6 218 76.6
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 8.4e-104 380.6 218 75.7
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 1.1e-103 380.2 218 76.1
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 1.1e-103 380.2 218 76.1
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 1.9e-103 379.4 218 76.1
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.9e-103 379.4 218 75.7
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 1.9e-103 379.4 218 73.4
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 7.1e-103 377.5 218 76.1
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 7.1e-103 377.5 218 75.2
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 7.1e-103 377.5 218 73.4
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 7.1e-103 377.5 218 75.7
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 2.7e-102 375.6 218 74.3
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 7.8e-102 374.0 218 73.4
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 7.8e-102 374.0 218 74.8
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 1.3e-101 373.2 218 74.8
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 1.7e-101 372.9 219 74.9
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.3e-101 372.5 218 74.8
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 2.3e-101 372.5 219 74.9
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 2.3e-101 372.5 218 74.8
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 3.9e-101 371.7 218 72.9
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 5.1e-101 371.3 220 74.5
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 6.6e-101 370.9 219 75.8
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 1.1e-100 370.2 218 72.0
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 1.1e-100 370.2 218 72.0
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 1.1e-100 370.2 219 74.4
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 1.9e-100 369.4 216 72.2
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 1.9e-100 369.4 216 72.2
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 1.9e-100 369.4 223 70.9
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 5.6e-100 367.9 218 72.5
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 7.3e-100 367.5 218 72.5
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 1.3e-99 366.7 219 73.1
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 1.3e-99 366.7 218 72.5
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 1.3e-99 366.7 219 72.6
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 2.1e-99 365.9 239 69.0
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 2.1e-99 365.9 218 72.0
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 3.6e-99 365.2 202 77.7
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 4.8e-99 364.8 216 72.2
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 8.1e-99 364.0 219 72.6
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 8.1e-99 364.0 218 70.2
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 1.1e-98 363.6 219 72.6
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 1.4e-98 363.2 219 72.1
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 1.4e-98 363.2 218 74.3
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 1.4e-98 363.2 218 74.3
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 1.4e-98 363.2 218 70.6
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 3.1e-98 362.1 218 71.6
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 4.0e-98 361.7 217 71.4
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 4.0e-98 361.7 217 71.4
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 1.2e-97 360.1 220 71.8
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 1.2e-97 360.1 220 71.8
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 2.0e-97 359.4 219 71.2
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 5.8e-97 357.8 219 71.2
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 5.8e-97 357.8 219 70.8
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 5.8e-97 357.8 215 72.1
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 5.8e-97 357.8 220 71.4
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 5.8e-97 357.8 212 71.2
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 9.9e-97 357.1 218 69.7
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 8.4e-96 354.0 218 71.6
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 1.2e-94 350.1 218 70.2
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 1.6e-94 349.7 206 72.8
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 1.0e-93 347.1 218 69.3
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 1.3e-93 346.7 218 68.8
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 6.6e-93 344.4 219 67.1
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 1.5e-92 343.2 218 68.8
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 1.5e-92 343.2 221 71.0
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 2.8e-91 339.0 214 70.1
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 6.2e-91 337.8 218 67.0
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.1e-90 337.0 218 66.5
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 9.0e-90 334.0 218 64.7
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.9e-87 326.2 218 62.8
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.0e-85 320.5 184 77.7
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 3.7e-83 312.0 218 68.3
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 9.0e-82 307.4 204 69.1
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 3.0e-77 292.4 218 59.2
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 5.7e-76 288.1 159 76.7
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 2.8e-75 285.8 217 62.2
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 6.3e-75 284.6 216 57.4
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 1.1e-74 283.9 218 56.9
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 4.1e-74 282.0 218 56.9
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 6.9e-74 281.2 220 61.4
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 2.9e-72 275.8 220 60.5
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 3.2e-71 272.3 220 55.5
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 1.3e-67 260.4 210 55.7
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 1.3e-67 260.4 159 70.4
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.8e-67 259.2 148 76.4
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 5.3e-66 255.0 136 82.4
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 4.2e-63 245.4 218 53.7
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 7.4e-60 234.6 142 71.1
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 3.2e-55 219.2 220 47.3
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 7.7e-49 198.0 118 73.7
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.5e-47 193.7 148 53.4
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 9.1e-42 174.5 224 43.3
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 1.7e-40 170.2 109 67.9
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.4e-37 160.6 185 46.5
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.5e-31 138.7 148 46.6
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 2.0e-17 93.6 60 63.3
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 5.2e-13 79.0 40 77.5
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 9.2e-10 68.2 34 73.5
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 1.7e-08 63.9 41 65.9
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 6.6e-08 62.0 34 73.5


User provided reference genes

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