Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 1.1e-159 566.6 305 100.0
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 8.3e-110 401.0 310 70.3
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 1.0e-107 394.0 309 68.6
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 1.9e-106 389.8 307 70.0
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 3.6e-105 385.6 305 66.9
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 6.8e-104 381.3 321 67.6
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 2.0e-103 379.8 310 65.8
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 2.6e-103 379.4 310 66.1
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 1.3e-102 377.1 315 67.0
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 3.7e-102 375.6 309 68.9
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 8.3e-102 374.4 308 70.8
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 1.9e-101 373.2 313 67.4
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 9.2e-101 370.9 314 65.0
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 2.7e-100 369.4 310 63.2
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 3.5e-100 369.0 323 66.9
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 6.0e-100 368.2 314 63.4
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 3.0e-99 365.9 322 64.0
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 5.0e-99 365.2 310 66.1
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 5.0e-99 365.2 310 62.9
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 6.6e-99 364.8 312 62.8
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 6.6e-99 364.8 314 64.0
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 8.6e-99 364.4 311 62.7
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 8.6e-99 364.4 313 63.9
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 1.1e-98 364.0 305 66.6
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 1.1e-98 364.0 315 63.5
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 1.5e-98 363.6 311 65.6
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.5e-98 363.6 312 62.5
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 1.5e-98 363.6 228 77.6
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 2.5e-98 362.8 312 62.5
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 2.5e-98 362.8 326 63.2
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 5.6e-98 361.7 307 71.0
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 1.6e-97 360.1 317 63.4
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 1.6e-97 360.1 232 78.0
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 6.2e-97 358.2 321 60.7
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 1.8e-96 356.7 310 61.3
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 1.8e-96 356.7 218 80.3
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 5.2e-96 355.1 311 65.6
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 5.2e-96 355.1 308 61.4
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 8.9e-96 354.4 309 64.1
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 5.8e-95 351.7 319 60.2
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 5.8e-95 351.7 312 62.2
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 9.8e-95 350.9 317 63.4
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 1.7e-94 350.1 307 61.9
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 2.2e-94 349.7 319 59.9
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 2.9e-94 349.4 313 60.1
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 2.9e-94 349.4 311 63.7
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 3.7e-94 349.0 320 64.1
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 4.9e-94 348.6 318 61.0
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 4.9e-94 348.6 310 64.2
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 4.9e-94 348.6 336 61.3
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 1.1e-93 347.4 322 57.8
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 7.1e-93 344.7 323 59.8
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 1.2e-92 344.0 308 60.1
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 3.5e-92 342.4 313 63.9
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 6.0e-92 341.7 309 63.4
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 7.8e-92 341.3 312 64.1
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.0e-91 340.9 311 60.1
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 1.7e-91 340.1 311 64.0
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 2.3e-91 339.7 306 61.8
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 3.0e-91 339.3 305 62.6
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 3.9e-91 339.0 333 60.1
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 5.1e-91 338.6 221 74.2
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 6.6e-91 338.2 315 61.3
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 8.6e-91 337.8 205 80.0
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 1.1e-90 337.4 309 61.8
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 2.5e-90 336.3 319 60.2
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 3.3e-90 335.9 308 61.4
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 4.3e-90 335.5 324 63.3
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 4.3e-90 335.5 318 59.1
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 5.6e-90 335.1 313 60.7
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 7.3e-90 334.7 308 60.1
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 7.3e-90 334.7 323 57.9
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 9.5e-90 334.3 311 60.1
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 9.5e-90 334.3 311 60.1
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 1.6e-89 333.6 315 65.4
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 1.6e-89 333.6 311 59.5
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 2.8e-89 332.8 316 60.4
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 2.8e-89 332.8 307 59.3
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 2.8e-89 332.8 219 74.4
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 2.8e-89 332.8 309 61.2
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 3.6e-89 332.4 309 59.5
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 3.6e-89 332.4 312 59.6
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 4.7e-89 332.0 300 61.0
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 6.2e-89 331.6 323 59.1
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 8.1e-89 331.3 231 71.9
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 8.1e-89 331.3 220 74.1
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 8.1e-89 331.3 321 55.8
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 1.1e-88 330.9 308 60.4
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 2.3e-88 329.7 215 75.8
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 2.3e-88 329.7 215 75.8
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 2.3e-88 329.7 230 70.0
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 2.6e-87 326.2 310 56.1
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 3.4e-87 325.9 313 57.8
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 3.4e-87 325.9 306 59.5
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 1.3e-86 323.9 305 61.6
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 2.2e-86 323.2 217 72.4
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 2.9e-86 322.8 318 61.0
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 3.8e-86 322.4 216 71.3
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 8.4e-86 321.2 222 68.5
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 4.1e-85 318.9 223 67.7
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 1.6e-84 317.0 299 63.5
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 2.7e-84 316.2 289 59.9
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 1.7e-83 313.5 211 70.6
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 5.1e-83 312.0 289 59.5
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 5.6e-82 308.5 198 74.2
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 7.3e-82 308.1 212 67.5
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 3.1e-80 302.8 224 63.4
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 2.9e-78 296.2 290 53.8
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 8.4e-78 294.7 295 59.3
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 1.3e-75 287.3 228 66.2
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 2.2e-70 270.0 278 56.8
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 5.1e-67 258.8 226 52.2
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 5.6e-66 255.4 209 57.4
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 3.1e-64 249.6 330 52.1
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 2.6e-63 246.5 202 60.4
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 5.8e-63 245.4 267 56.9
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 6.4e-62 241.9 233 51.9
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 1.6e-60 237.3 164 70.7
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 2.3e-59 233.4 192 65.6
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 1.2e-47 194.5 169 55.0
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 6.7e-43 178.7 110 76.4
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 6.9e-40 168.7 145 59.3
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 3.4e-39 166.4 161 50.3
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 1.5e-34 151.0 265 40.8
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 2.2e-33 147.1 83 80.7
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 2.8e-33 146.7 83 80.7
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 1.9e-29 134.0 141 53.2
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 2.5e-29 133.7 188 38.8
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 4.7e-28 129.4 150 38.7
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 1.4e-27 127.9 125 49.6
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 1.8e-27 127.5 80 73.8
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 3.9e-27 126.3 199 34.2
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 1.1e-26 124.8 68 80.9
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 3.0e-19 100.1 148 43.9
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 4.8e-17 92.8 53 77.4
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.1e-16 91.7 155 41.3
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 1.2e-10 71.6 83 48.2
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 9.8e-10 68.6 147 35.4
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 3.7e-09 66.6 87 46.0
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 8.3e-09 65.5 31 87.1
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 5.4e-08 62.8 36 83.3
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 2.0e-07 60.8 45 66.7
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 2.7e-07 60.5 34 85.3
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 5.9e-07 59.3 28 85.7


User provided reference genes

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