Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 1.0e-93 346.7 167 100.0
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 2.3e-61 239.2 194 66.0
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 2.3e-61 239.2 194 66.0
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 2.1e-59 232.6 200 62.5
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 2.1e-59 232.6 194 64.4
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 1.1e-58 230.3 200 62.0
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 6.9e-58 227.6 194 62.4
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 9.0e-58 227.3 194 61.9
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.5e-57 226.5 194 61.9
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.5e-57 226.5 194 61.9
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 2.6e-57 225.7 197 60.4
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 7.6e-57 224.2 194 61.9
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 9.9e-57 223.8 194 60.8
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 4.9e-56 221.5 195 62.6
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 4.9e-56 221.5 195 62.6
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 8.4e-56 220.7 194 60.8
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 1.9e-55 219.5 194 60.8
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.9e-55 219.5 194 61.9
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 4.2e-55 218.4 194 60.8
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 7.1e-55 217.6 168 65.5
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 9.3e-55 217.2 194 60.3
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.6e-54 216.5 215 55.3
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 2.1e-54 216.1 192 61.5
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 2.1e-54 216.1 194 59.3
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 4.6e-54 214.9 164 65.2
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 4.6e-54 214.9 194 59.3
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 6.0e-54 214.5 193 58.5
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 7.9e-54 214.2 188 60.1
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.0e-53 213.8 194 58.8
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 1.0e-53 213.8 194 58.8
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 1.3e-53 213.4 194 59.3
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 1.3e-53 213.4 186 62.4
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 3.0e-53 212.2 190 58.4
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 3.9e-53 211.8 196 58.2
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 3.9e-53 211.8 194 59.3
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 6.7e-53 211.1 191 59.2
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 8.7e-53 210.7 187 59.4
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 8.7e-53 210.7 194 56.7
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 8.7e-53 210.7 194 56.7
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 8.7e-53 210.7 193 60.1
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 8.7e-53 210.7 193 58.0
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 1.1e-52 210.3 194 58.8
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 1.1e-52 210.3 192 58.3
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.5e-52 209.1 194 58.2
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 4.3e-52 208.4 194 58.8
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 4.3e-52 208.4 186 61.8
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 7.4e-52 207.6 194 56.2
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 7.4e-52 207.6 194 57.2
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 7.4e-52 207.6 194 57.2
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 9.6e-52 207.2 194 56.7
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 9.6e-52 207.2 194 56.7
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 1.3e-51 206.8 193 59.6
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.6e-51 206.5 194 57.7
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 2.1e-51 206.1 190 58.9
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 2.1e-51 206.1 194 56.7
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 2.8e-51 205.7 190 58.9
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 2.8e-51 205.7 190 58.9
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 2.8e-51 205.7 195 55.4
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 6.2e-51 204.5 189 57.7
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 8.2e-51 204.1 190 57.4
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.2e-51 204.1 194 57.2
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.2e-51 204.1 194 57.2
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 8.2e-51 204.1 192 56.2
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 8.2e-51 204.1 187 58.8
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 1.1e-50 203.8 190 58.4
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 1.1e-50 203.8 190 58.4
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 1.4e-50 203.4 194 57.7
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 1.4e-50 203.4 194 57.7
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 1.8e-50 203.0 190 57.4
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 1.8e-50 203.0 195 59.0
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 1.8e-50 203.0 194 55.2
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 1.8e-50 203.0 194 55.7
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.4e-50 202.6 194 57.2
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 2.4e-50 202.6 194 53.6
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.4e-50 202.6 194 53.6
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 2.4e-50 202.6 179 60.9
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 3.1e-50 202.2 187 58.8
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 3.1e-50 202.2 187 58.8
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 3.1e-50 202.2 187 57.8
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 4.0e-50 201.8 190 57.9
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.0e-50 201.8 194 56.7
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.0e-50 201.8 194 53.6
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 5.3e-50 201.4 190 56.8
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 5.3e-50 201.4 190 56.3
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 5.3e-50 201.4 186 58.1
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 9.0e-50 200.7 187 58.3
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 9.0e-50 200.7 187 58.3
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.5e-49 199.9 189 58.2
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 2.6e-49 199.1 190 56.8
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.4e-49 198.7 204 51.0
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 1.0e-48 197.2 163 62.0
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.3e-48 196.8 236 45.8
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.7e-48 196.4 236 45.3
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 2.9e-48 195.7 172 61.6
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 3.8e-48 195.3 191 53.4
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 3.2e-47 192.2 194 53.1
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 5.5e-47 191.4 194 53.1
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 5.5e-47 191.4 188 58.0
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 1.1e-44 183.7 191 51.8
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 1.5e-44 183.3 156 62.8
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 2.5e-44 182.6 280 43.2
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 3.3e-44 182.2 194 52.1
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 3.7e-43 178.7 174 56.9
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 6.3e-43 177.9 185 52.4
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 6.3e-43 177.9 150 60.0
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 8.2e-43 177.6 152 59.2
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 1.8e-42 176.4 151 60.3
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 4.1e-42 175.3 194 50.0
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 5.3e-42 174.9 173 56.1
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 1.2e-41 173.7 156 58.3
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 2.6e-41 172.6 162 56.2
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 6.5e-40 167.9 186 51.6
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 6.5e-40 167.9 186 51.6
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 6.5e-40 167.9 98 79.6
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.4e-39 166.8 217 45.6
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.4e-39 166.8 140 60.7
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 5.5e-39 164.9 187 50.3
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 1.6e-38 163.3 193 46.6
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 4.6e-38 161.8 190 49.5
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 2.3e-37 159.5 190 49.5
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.3e-37 159.5 100 74.0
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.8e-37 157.5 99 73.7
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 1.1e-36 157.1 165 52.7
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 7.4e-36 154.5 99 69.7
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 6.3e-35 151.4 99 68.7
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 8.2e-35 151.0 190 42.1
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.8e-29 133.3 99 61.6
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 1.1e-26 124.0 193 41.5
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 1.4e-26 123.6 99 58.6
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.8e-26 123.2 83 71.1
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 5.0e-24 115.2 183 36.1
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 5.0e-24 115.2 183 36.1
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.9e-23 113.2 213 32.9
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.2e-23 112.5 99 58.6
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 2.8e-19 99.4 216 29.2
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 1.8e-18 96.7 137 36.5
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 3.1e-18 95.9 190 32.6
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 2.0e-17 93.2 172 40.1
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.1e-15 87.4 190 28.4
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 1.2e-14 84.0 172 36.0
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 6.7e-13 78.2 49 69.4
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 8.8e-13 77.8 44 84.1
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.7e-11 73.6 42 69.0
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 3.8e-08 62.4 43 72.1


User provided reference genes

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