Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 7.8e-116 420.6 235 100.0
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 6.3e-57 224.9 233 55.8
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 2.4e-56 223.0 241 55.2
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 4.1e-56 222.2 240 57.9
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 2.0e-55 219.9 234 54.3
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 7.7e-55 218.0 232 55.2
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 1.0e-54 217.6 242 54.1
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 6.5e-54 214.9 239 55.2
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 1.1e-53 214.2 235 54.9
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 1.9e-53 213.4 237 54.9
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 5.5e-53 211.8 238 53.4
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 2.1e-52 209.9 234 53.4
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 2.7e-52 209.5 237 54.9
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 3.9e-51 205.7 231 53.7
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 5.1e-51 205.3 238 54.6
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 5.1e-51 205.3 236 51.3
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 8.8e-51 204.5 237 52.3
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 1.7e-49 200.3 241 51.9
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 4.8e-49 198.7 241 51.9
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 4.8e-49 198.7 235 53.2
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 8.2e-49 198.0 237 52.3
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 1.8e-48 196.8 235 53.2
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 1.8e-48 196.8 235 53.2
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 3.1e-48 196.1 240 52.5
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 3.1e-48 196.1 236 50.4
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 1.6e-47 193.7 255 47.5
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 2.0e-47 193.4 239 52.7
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 2.6e-47 193.0 252 49.6
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 4.5e-47 192.2 242 50.4
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.0e-46 191.0 240 49.6
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 1.0e-46 191.0 225 53.8
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 2.2e-46 189.9 239 49.8
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 3.8e-46 189.1 240 49.6
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 8.5e-46 188.0 237 50.6
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 1.1e-45 187.6 237 51.1
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 1.5e-45 187.2 236 51.7
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 2.5e-45 186.4 235 49.8
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 2.7e-44 183.0 241 49.0
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 4.7e-44 182.2 252 48.4
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 4.7e-44 182.2 238 49.2
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 6.1e-44 181.8 236 49.6
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 6.1e-44 181.8 236 49.6
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 6.1e-44 181.8 240 49.2
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 8.0e-44 181.4 227 51.1
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 5.2e-43 178.7 235 50.6
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 5.2e-43 178.7 240 49.2
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 8.8e-43 177.9 236 48.7
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 4.4e-42 175.6 253 49.4
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 3.7e-41 172.6 231 48.9
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 3.7e-41 172.6 231 48.9
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 6.3e-41 171.8 217 53.5
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 6.3e-41 171.8 165 61.2
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 1.1e-40 171.0 238 46.6
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 1.8e-40 170.2 222 50.5
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 4.1e-40 169.1 135 67.4
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.2e-39 167.5 224 50.0
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 1.2e-39 167.5 239 47.7
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 2.7e-39 166.4 236 50.0
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 3.5e-39 166.0 245 48.2
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 4.5e-39 165.6 238 45.4
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 7.7e-39 164.9 241 48.5
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 1.7e-38 163.7 237 47.7
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 1.1e-37 161.0 224 49.6
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.1e-37 161.0 224 49.6
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 1.9e-37 160.2 232 46.1
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 4.2e-37 159.1 239 47.3
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 9.4e-37 157.9 236 44.5
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.1e-36 156.8 224 48.7
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 2.1e-36 156.8 231 49.4
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 2.1e-36 156.8 239 45.6
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 3.6e-36 156.0 235 45.5
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 4.7e-36 155.6 242 45.5
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 8.0e-36 154.8 237 46.0
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 2.3e-35 153.3 189 51.9
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 4.0e-35 152.5 162 53.1
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 6.8e-35 151.8 236 46.2
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 5.7e-34 148.7 175 48.6
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 5.7e-34 148.7 216 46.3
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 9.8e-34 147.9 250 41.6
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 1.3e-33 147.5 206 48.5
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 1.3e-33 147.5 224 45.5
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 6.3e-33 145.2 190 51.6
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 1.1e-32 144.4 256 43.4
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 1.4e-32 144.1 163 52.8
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 1.4e-32 144.1 221 46.2
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 4.1e-32 142.5 137 56.9
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 7.0e-32 141.7 232 44.0
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 4.5e-31 139.0 114 60.5
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 3.8e-30 136.0 243 38.3
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 1.5e-29 134.0 228 43.4
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 3.2e-29 132.9 278 36.0
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 9.5e-29 131.3 227 41.9
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 2.7e-28 129.8 270 39.3
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 2.7e-28 129.8 302 35.4
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.0e-27 127.9 222 45.0
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 6.8e-27 125.2 193 42.0
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 1.5e-26 124.0 130 53.1
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 2.4e-24 116.7 208 43.3
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 2.9e-22 109.8 159 48.4
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 1.9e-21 107.1 186 47.3
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 7.3e-21 105.1 206 44.2
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 2.1e-20 103.6 142 45.8
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 2.8e-20 103.2 225 41.3
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 2.8e-20 103.2 160 47.5
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 1.4e-19 100.9 170 41.8
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 1.8e-19 100.5 170 42.4
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 3.0e-19 99.8 219 37.0
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 3.0e-19 99.8 196 43.4
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 3.0e-19 99.8 205 40.5
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 5.2e-19 99.0 159 47.2
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 1.2e-18 97.8 168 46.4
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 1.5e-18 97.4 196 42.9
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 3.4e-18 96.3 160 45.0
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 4.4e-18 95.9 196 42.9
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 4.4e-18 95.9 195 43.1
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 5.7e-18 95.5 195 44.1
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 2.2e-17 93.6 206 39.3
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 1.1e-16 91.3 129 44.2
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 2.4e-16 90.1 175 42.9
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 3.2e-16 89.7 159 43.4
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 3.2e-16 89.7 159 43.4
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 3.2e-16 89.7 159 43.4
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 5.9e-15 85.5 170 39.4
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 2.5e-13 80.1 138 43.5
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 4.7e-12 75.9 120 44.2
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 1.0e-11 74.7 198 34.8
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 3.1e-11 73.2 171 35.1
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 9.8e-10 68.2 36 75.0
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 1.2e-07 61.2 156 33.3
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 1.0e-06 58.2 128 38.3


User provided reference genes

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