Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 1.9e-178 629.0 302 100.0
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 4.2e-130 468.4 279 81.0
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 1.8e-125 453.0 279 78.5
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 1.8e-125 453.0 279 76.7
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 9.0e-125 450.7 279 78.1
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.0e-123 447.2 279 76.7
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 1.7e-123 446.4 282 75.5
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 2.5e-122 442.6 279 75.6
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.2e-122 441.0 281 76.9
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.6e-121 438.3 281 76.2
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 4.6e-121 438.3 281 76.5
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 4.6e-121 438.3 279 75.6
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 7.9e-121 437.6 281 76.5
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.9e-121 437.6 281 76.5
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 6.7e-120 434.5 280 75.7
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 1.5e-119 433.3 282 74.1
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 3.3e-119 432.2 282 75.5
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 4.3e-119 431.8 280 75.7
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 5.7e-119 431.4 281 73.7
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 9.7e-119 430.6 279 72.4
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 2.8e-118 429.1 280 75.0
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 3.7e-118 428.7 281 73.7
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 4.8e-118 428.3 279 74.2
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 1.4e-117 426.8 282 73.8
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 2.4e-117 426.0 280 71.1
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.0e-116 422.9 280 74.6
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 3.4e-116 422.2 284 73.6
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 1.7e-115 419.9 278 71.2
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 3.8e-115 418.7 285 72.6
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 5.0e-115 418.3 280 72.9
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 5.0e-115 418.3 281 73.0
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 6.5e-115 417.9 293 69.3
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 6.5e-115 417.9 276 72.8
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 1.4e-114 416.8 286 71.3
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 1.9e-114 416.4 277 71.8
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 1.9e-114 416.4 277 71.8
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 2.5e-114 416.0 277 71.5
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 7.2e-114 414.5 276 71.4
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 7.2e-114 414.5 283 70.0
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 9.4e-114 414.1 279 71.7
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 1.6e-113 413.3 283 70.0
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 3.6e-113 412.1 280 71.1
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 4.7e-113 411.8 282 72.3
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 6.1e-113 411.4 283 67.8
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 6.1e-113 411.4 283 70.3
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 7.9e-113 411.0 278 71.9
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.0e-112 410.6 285 70.5
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 1.0e-112 410.6 283 71.4
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 1.8e-112 409.8 284 72.9
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 3.0e-112 409.1 283 71.0
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 3.9e-112 408.7 279 69.5
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 5.1e-112 408.3 285 70.9
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.1e-111 407.1 280 70.0
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.1e-111 407.1 280 69.6
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 2.0e-111 406.4 281 70.5
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 2.0e-111 406.4 281 69.4
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 3.3e-111 405.6 280 70.4
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 4.4e-111 405.2 281 69.0
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 4.4e-111 405.2 281 70.5
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 5.7e-111 404.8 281 71.2
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 9.7e-111 404.1 277 70.0
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 1.7e-110 403.3 279 69.9
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 2.2e-110 402.9 280 70.4
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 4.8e-110 401.7 280 68.6
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 6.3e-110 401.4 288 69.1
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 8.2e-110 401.0 288 69.4
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.8e-109 399.8 288 69.1
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.8e-109 399.8 283 70.0
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 1.8e-109 399.8 281 70.1
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 3.1e-109 399.1 281 69.4
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 3.1e-109 399.1 281 69.0
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 3.1e-109 399.1 283 69.6
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 3.1e-109 399.1 281 70.1
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 5.3e-109 398.3 282 68.4
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 9.1e-109 397.5 284 69.0
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 4.5e-108 395.2 280 67.5
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 2.2e-107 392.9 279 70.3
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 5.0e-107 391.7 287 67.9
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 1.5e-106 390.2 287 69.0
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 2.5e-106 389.4 281 68.7
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 3.2e-106 389.0 281 69.8
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 9.4e-106 387.5 279 69.5
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 3.6e-105 385.6 278 68.7
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 3.6e-105 385.6 278 68.7
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 3.6e-105 385.6 275 67.6
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 6.1e-105 384.8 276 69.2
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 6.1e-105 384.8 280 69.6
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 8.0e-105 384.4 287 69.0
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.0e-104 384.0 284 66.5
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 2.3e-104 382.9 287 68.6
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 4.0e-104 382.1 284 66.9
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 8.8e-104 380.9 284 67.3
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 8.8e-104 380.9 284 67.3
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 1.1e-103 380.6 279 68.8
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.0e-103 379.8 284 65.8
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.4e-103 378.6 284 65.5
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 5.7e-103 378.3 280 67.1
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 5.7e-103 378.3 279 67.7
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 9.7e-103 377.5 285 66.3
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 1.3e-102 377.1 278 67.6
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.7e-102 376.7 279 67.4
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 2.8e-102 375.9 285 66.3
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 4.8e-102 375.2 280 67.1
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 5.3e-101 371.7 278 66.9
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 7.0e-101 371.3 280 66.8
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 7.7e-100 367.9 280 64.6
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 2.9e-99 365.9 283 65.0
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 7.2e-98 361.3 285 63.2
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 2.1e-97 359.8 281 63.7
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 3.6e-97 359.0 218 78.4
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 6.1e-97 358.2 281 62.3
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.8e-96 356.7 249 71.5
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 3.0e-96 355.9 282 64.9
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 1.7e-94 350.1 293 59.7
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 1.7e-94 350.1 224 72.8
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 2.2e-94 349.7 280 62.9
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 2.2e-94 349.7 253 68.8
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 8.3e-94 347.8 280 61.1
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 1.1e-93 347.4 282 63.8
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 9.1e-93 344.4 280 61.1
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.0e-92 343.2 283 63.6
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 2.0e-92 343.2 280 59.6
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 3.8e-91 339.0 280 59.6
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 5.0e-91 338.6 282 61.3
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 6.5e-91 338.2 275 61.1
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 1.5e-90 337.0 293 60.4
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 4.2e-90 335.5 281 60.9
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 2.4e-85 319.7 181 82.3
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 3.1e-85 319.3 252 60.7
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 3.8e-83 312.4 290 56.6
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 1.6e-81 307.0 299 55.5
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.0e-80 304.3 277 58.1
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.7e-68 263.1 135 88.9
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 4.0e-64 249.2 305 47.5
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.9e-61 240.4 280 45.7
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 4.6e-60 235.7 317 43.5
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.7e-59 233.8 292 41.1
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 6.8e-56 221.9 121 81.8
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 8.9e-56 221.5 118 83.1
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 1.5e-55 220.7 202 57.4
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 1.3e-54 217.6 148 65.5
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 3.2e-53 213.0 165 55.8
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 4.1e-53 212.6 166 61.4
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.0e-51 206.5 167 64.7
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.7e-46 190.7 163 62.0
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 8.7e-35 151.8 82 82.9
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 7.6e-31 138.7 241 37.8
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 1.1e-29 134.8 140 52.1
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 4.6e-28 129.4 115 55.7
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.1e-26 124.8 190 40.0
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.5e-26 124.4 120 47.5
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.9e-26 124.0 325 28.3
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.1e-25 120.6 68 85.3
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.4e-23 113.2 64 76.6
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.0e-22 111.7 64 75.0
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.0e-22 111.7 132 42.4
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.7e-22 110.9 64 75.0
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.9e-21 107.5 187 35.8
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 1.2e-20 104.8 251 29.5
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.1e-18 98.2 68 72.1
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 1.5e-18 97.8 108 48.1
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 1.3e-17 94.7 125 37.6
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 1.8e-16 90.9 46 82.6
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 3.0e-11 73.6 156 30.1
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 3.9e-11 73.2 96 40.6
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.4e-08 64.7 38 73.7


User provided reference genes

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