Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A620G41 Lonicera japonica HOM05D001087 ORTHO05D005406 2.3e-58 228.8 124 100.0
GSVIVG01032937001 Vitis vinifera HOM05D001087 ORTHO05D005406 1.7e-21 106.3 64 87.5
CSS0025073 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D005406 5.0e-21 104.8 64 85.9
Atru.chr6.2747 Acer truncatum HOM05D001087 ORTHO05D005406 1.1e-20 103.6 64 85.9
Rhsim08G0036900 Rhododendron simsii HOM05D001087 ORTHO05D005406 1.1e-20 103.6 64 81.2
CiPaw.03G079200 Carya illinoinensis HOM05D001087 ORTHO05D005406 2.5e-20 102.4 64 82.8
Thecc.04G053100 Theobroma cacao HOM05D001087 ORTHO05D005406 2.5e-20 102.4 64 84.4
QL02p063912 Quercus lobata HOM05D001087 ORTHO05D005406 3.2e-20 102.1 64 84.4
Duzib138G0185 Durio zibethinus HOM05D001087 ORTHO05D005406 5.5e-20 101.3 64 81.2
MELO3C014745.2 Cucumis melo HOM05D001087 ORTHO05D005406 9.4e-20 100.5 64 81.2
QL02p063896 Quercus lobata HOM05D001087 ORTHO05D005406 9.4e-20 100.5 65 81.5
Actinidia19533 Actinidia chinensis HOM05D001087 ORTHO05D005406 1.2e-19 100.1 62 83.9
ClCG05G012380 Citrullus lanatus HOM05D001087 ORTHO05D005406 1.2e-19 100.1 64 81.2
RcHm_v2.0_Chr2g0176781 Rosa chinensis HOM05D001087 ORTHO05D005406 1.6e-19 99.8 64 78.1
MD09G1000300 Malus domestica HOM05D001087 ORTHO05D005406 2.1e-19 99.4 64 79.7
Psat0s4626g0080 Pisum sativum HOM05D001087 ORTHO05D005406 2.1e-19 99.4 64 78.1
Ca_08243_v3 Cicer arietinum L. HOM05D001087 ORTHO05D005406 2.7e-19 99.0 64 79.7
Oeu062515.1 Olea europaea HOM05D001087 ORTHO05D005406 2.7e-19 99.0 64 79.7
TPR.G31052 Trifolium pratense HOM05D001087 ORTHO05D005406 3.6e-19 98.6 64 76.6
EL10Ac6g13922 Beta vulgaris HOM05D001087 ORTHO05D005406 4.7e-19 98.2 64 78.1
CsaV3_3G020140 Cucumis sativus L. HOM05D001087 ORTHO05D005406 4.7e-19 98.2 64 79.7
Lalb_Chr14g0364241 Lupinus albus HOM05D001087 ORTHO05D005406 4.7e-19 98.2 64 79.7
COL.COLO4_13413 Corchorus olitorius HOM05D001087 ORTHO05D005406 6.1e-19 97.8 64 81.2
Medtr7g084880 Medicago truncatula HOM05D001087 ORTHO05D005406 6.1e-19 97.8 64 76.6
Phvul.001G097600 Phaseolus vulgaris HOM05D001087 ORTHO05D005406 6.1e-19 97.8 64 78.1
PGR042G1457 Punica granatum HOM05D001087 ORTHO05D005406 6.1e-19 97.8 64 79.7
VMungo1383G1594 Vigna mungo HOM05D001087 ORTHO05D005406 6.1e-19 97.8 64 78.1
Ciclev10014134m.g Citrus clementina HOM05D001087 ORTHO05D005406 8.0e-19 97.4 64 81.2
FAN27G2264 Fragaria x ananassa HOM05D001087 ORTHO05D005406 8.0e-19 97.4 64 75.0
Nn4g22026 Nelumbo nucifera HOM05D001087 ORTHO05D005406 8.0e-19 97.4 64 81.2
Gohir.D08G048400 Gossypium hirsutum HOM05D001087 ORTHO05D005406 1.0e-18 97.1 64 81.2
Gorai.004G047900 Gossypium raimondii HOM05D001087 ORTHO05D005406 1.0e-18 97.1 64 81.2
PSO478G2418 Papaver somniferum HOM05D001087 ORTHO05D005406 1.0e-18 97.1 64 81.2
Ah.02g128690 Amaranthus hybridus HOM05D001087 ORTHO05D005406 1.4e-18 96.7 64 75.0
Gohir.A08G038200 Gossypium hirsutum HOM05D001087 ORTHO05D005406 1.4e-18 96.7 64 81.2
Glyma.19G107500 Glycine max HOM05D001087 ORTHO05D005406 1.8e-18 96.3 64 75.0
FvH4_6g54490 Fragaria vesca HOM05D001087 ORTHO05D005406 2.3e-18 95.9 64 73.4
FAN14G5433 Fragaria x ananassa HOM05D001087 ORTHO05D005406 2.3e-18 95.9 64 73.4
Prupe.3G316100 Prunus persica HOM05D001087 ORTHO05D005406 2.3e-18 95.9 64 75.0
Cc07_g01490 Coffea canephora HOM05D001087 ORTHO05D005406 3.0e-18 95.5 65 73.8
PSO017G2606 Papaver somniferum HOM05D001087 ORTHO05D005406 3.0e-18 95.5 64 79.7
SalBow4G1044 Salvia bowleyana HOM05D001087 ORTHO05D005406 3.0e-18 95.5 64 78.1
Lj1g0002000 Lotus japonicus HOM05D001087 ORTHO05D005406 4.0e-18 95.1 64 75.0
arahy.Tifrunner.gnm1.ann1.65DI7F Arachis hypogaea HOM05D001087 ORTHO05D005406 5.2e-18 94.7 64 76.6
CANSAT64G1951 Cannabis sativa HOM05D001087 ORTHO05D005406 5.2e-18 94.7 64 76.6
AUR62017451 Chenopodium quinoa HOM05D001087 ORTHO05D005406 5.2e-18 94.7 64 75.0
AUR62032520 Chenopodium quinoa HOM05D001087 ORTHO05D005406 6.8e-18 94.4 64 75.0
Glyma.16G044400 Glycine max HOM05D001087 ORTHO05D005406 6.8e-18 94.4 64 75.0
arahy.Tifrunner.gnm1.ann1.C4QHPC Arachis hypogaea HOM05D001087 ORTHO05D005406 1.2e-17 93.6 64 75.0
TAR629G2385 Trochodendron aralioides HOM05D001087 ORTHO05D005406 1.2e-17 93.6 64 76.6
CAN.G473.167 Capsicum annuum HOM05D001087 ORTHO05D005406 1.5e-17 93.2 64 75.0
HanXRQChr17g0550851 Helianthus annuus HOM05D001087 ORTHO05D005406 1.5e-17 93.2 64 76.6
Solyc02g094610.1 Solanum lycopersicum HOM05D001087 ORTHO05D005406 1.5e-17 93.2 64 75.0
Sopen02g039270 Solanum pennellii HOM05D001087 ORTHO05D005406 1.5e-17 93.2 64 75.0
DCAR_000957 Daucus carota HOM05D001087 ORTHO05D005406 2.0e-17 92.8 64 73.4
Nitab4.5_0002901g0070 Nicotiana tabacum HOM05D001087 ORTHO05D005406 2.0e-17 92.8 64 73.4
HPP92_021688 Vanilla planifolia HOM05D001087 ORTHO05D005406 2.6e-17 92.4 64 73.4
Hund04150 Selenicereus undatus HOM05D001087 ORTHO05D005406 3.4e-17 92.0 64 75.0
HPP92_021715 Vanilla planifolia HOM05D001087 ORTHO05D005406 3.4e-17 92.0 64 71.9
MBI07_g11062_MAGBIO Magnolia biondii HOM05D001087 ORTHO05D005406 5.7e-17 91.3 64 76.6
TWI32G0903 Tripterygium wilfordii HOM05D001087 ORTHO05D005406 5.7e-17 91.3 64 76.6
Manes.04G095500 Manihot esculenta HOM05D001087 ORTHO05D005406 7.5e-17 90.9 64 75.0
Nitab4.5_0000519g0400 Nicotiana tabacum HOM05D001087 ORTHO05D005406 7.5e-17 90.9 64 71.9
Sed0004915 Sechium edule HOM05D001087 ORTHO05D005406 1.3e-16 90.1 64 75.0
Lsat_1_v5_gn_3_103380 Lactuca sativa HOM05D001087 ORTHO05D005406 2.2e-16 89.4 64 75.0
Potri.014G141100 Populus trichocarpa HOM05D001087 ORTHO05D005406 2.8e-16 89.0 64 75.0
ATR0582G201 Amborella trichopoda HOM05D001087 ORTHO05D005406 4.8e-16 88.2 64 71.9
Migut.F00007 Erythranthe guttata HOM05D001087 ORTHO05D005406 4.8e-16 88.2 64 70.3
Sabra14G0106400 Salix brachista HOM05D001087 ORTHO05D005406 4.8e-16 88.2 65 75.4
ECA246G3450 Erigeron canadensis HOM05D001087 ORTHO05D005406 6.3e-16 87.8 64 73.4
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 8.3e-16 87.4 62 71.0
Aqoxy3G01996 Aquilegia oxysepala HOM05D001087 ORTHO05D005406 1.1e-15 87.0 64 71.9
MSTRG.3036 Avicennia marina HOM05D001087 ORTHO05D005406 1.1e-15 87.0 64 71.9
SGA_v2.0_scaffold44G16961 Striga asiatica HOM05D001087 ORTHO05D005406 1.4e-15 86.7 68 67.6
Sc16g0004210 Simmondsia chinensis HOM05D001087 ORTHO05D005406 3.1e-15 85.5 64 71.9
Eucgr.H05015 Eucalyptus grandis HOM05D001087 ORTHO05D005406 7.0e-15 84.3 64 70.3
SalBow6G3864 Salvia bowleyana HOM05D001087 ORTHO05D004028 1.6e-14 83.2 65 69.2
THA.LOC104805290 Tarenaya hassleriana HOM05D001087 ORTHO05D005406 1.6e-14 83.2 64 65.6
Thhalv10006676m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 4.5e-14 81.6 64 67.2
AL1G24570 Arabidopsis lyrata HOM05D001087 ORTHO05D005406 5.9e-14 81.3 64 67.2
AT1G12930 Arabidopsis thaliana HOM05D001087 ORTHO05D005406 5.9e-14 81.3 64 67.2
Aa31LG1G1850 Aethionema arabicum HOM05D001087 ORTHO05D005406 7.7e-14 80.9 64 65.6
Carub.0001s1270 Capsella rubella HOM05D001087 ORTHO05D005406 7.7e-14 80.9 64 65.6
CARHR013280 Cardamine hirsuta HOM05D001087 ORTHO05D005406 7.7e-14 80.9 64 65.6
SEGI_07298 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 1.3e-13 80.1 64 64.1
Sp1g11500 Schrenkiella parvula HOM05D001087 ORTHO05D005406 2.9e-13 79.0 64 65.6
BcaB08g34240 Brassica carinata HOM05D001087 ORTHO05D005406 3.8e-13 78.6 64 65.6
CDE05G0125 Ceratophyllum demersum HOM05D001087 ORTHO05D005406 5.0e-13 78.2 96 51.0
C08p47020 Brassica napus HOM05D001087 ORTHO05D005406 6.5e-13 77.8 64 65.6
BolC8t52241H Brassica oleracea HOM05D001087 ORTHO05D005406 6.5e-13 77.8 64 65.6
A06p08730 Brassica napus HOM05D001087 ORTHO05D005406 1.1e-12 77.0 64 65.6
A09p63520 Brassica napus HOM05D001087 ORTHO05D005406 1.9e-12 76.3 64 64.1
BraA09t41703Z Brassica rapa HOM05D001087 ORTHO05D005406 1.9e-12 76.3 64 64.1
Cpa.g.sc70.26 Carica papaya HOM05D001087 ORTHO05D005406 7.2e-12 74.3 54 70.4
Mapoly0055s0098 Marchantia polymorpha HOM05D001087 ORTHO05D005406 1.6e-11 73.2 64 60.9
BolC5t29778H Brassica oleracea HOM05D001087 ORTHO05D005406 1.0e-10 70.5 69 60.9
Pp3c10_7760 Physcomitrium patens HOM05D001087 ORTHO05D005406 1.4e-10 70.1 64 60.9
C05p10320 Brassica napus HOM05D001087 ORTHO05D005406 3.0e-10 68.9 69 60.9
Zm00001eb197740 Zea mays HOM05D001087 ORTHO05D005406 1.5e-09 66.6 102 37.3
Pp3c14_8290 Physcomitrium patens HOM05D001087 ORTHO05D005406 4.4e-09 65.1 64 54.7
Pp3c14_8293 Physcomitrium patens HOM05D001087 ORTHO05D005406 4.4e-09 65.1 64 54.7
CBR_g30317 Chara braunii HOM05D001087 ORTHO05D005406 5.4e-07 58.2 64 46.9
SMO353G0092 Selaginella moellendorffii HOM05D001087 ORTHO05D005406 7.7e-06 54.3 84 39.3


User provided reference genes

Program Settings