Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 2256.5 1165 100.0
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 2081.2 1166 92.0
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 2073.9 1167 91.5
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 2057.3 1166 90.2
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 2047.7 1168 90.2
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 2045.4 1165 89.7
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 2043.1 1165 89.5
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 2043.1 1165 89.5
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 2035.0 1171 89.3
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 2034.2 1164 89.1
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 2026.1 1172 88.8
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 2017.3 1166 90.0
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 2013.4 1165 88.1
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 2013.0 1175 88.8
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 2009.2 1167 88.4
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 2009.2 1168 87.7
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 2008.8 1168 88.4
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 2008.4 1165 88.2
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 2006.1 1213 85.7
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 2005.7 1164 88.7
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1999.9 1166 87.9
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1996.5 1167 87.7
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1995.3 1168 87.7
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1994.9 1170 87.4
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1994.9 1165 87.6
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1991.5 1173 87.6
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1988.4 1166 85.9
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1987.2 1166 87.9
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1983.8 1172 87.3
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1981.5 1167 86.1
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1979.5 1166 86.2
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1976.4 1177 86.5
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1974.5 1166 86.5
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1973.4 1166 85.3
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1973.4 1166 87.7
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1973.0 1168 86.5
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1970.3 1166 86.8
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1969.1 1166 87.2
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1968.0 1175 86.7
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1964.9 1166 85.8
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1964.1 1168 86.1
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1963.3 1093 90.3
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1962.2 1166 85.4
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1960.7 1171 86.1
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1959.5 1209 84.8
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1959.1 1171 86.0
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1957.6 1167 85.9
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1957.2 1166 86.5
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1956.0 1170 85.8
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1949.5 1166 86.4
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1948.7 1170 85.9
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1948.3 1163 85.9
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1948.3 1204 83.7
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1947.2 1167 86.4
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1944.1 1175 84.8
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1942.9 1168 84.0
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1939.5 1175 85.4
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1939.1 1168 86.0
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1937.9 1166 85.8
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1936.4 1178 84.6
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1934.8 1170 85.2
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1934.1 1173 84.7
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1932.5 1198 84.3
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1931.4 1168 85.6
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1929.8 1168 84.7
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1929.1 1174 84.4
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1928.3 1168 85.7
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1924.4 1179 83.9
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1919.4 1170 84.2
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1917.5 1156 86.0
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1915.6 1172 84.2
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1909.0 1182 83.8
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1909.0 1173 84.1
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1908.3 1100 87.0
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1907.9 1177 84.2
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1907.9 1172 83.8
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1906.7 1167 84.7
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1906.0 1182 83.8
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1905.2 1171 83.7
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1894.0 1169 83.5
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1893.2 1193 82.6
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1891.7 1173 83.3
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1891.7 1173 83.3
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1889.8 1169 83.4
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1884.4 1168 83.9
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1871.7 1330 76.1
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1860.5 1167 80.4
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1856.3 1175 82.5
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1856.3 1099 84.5
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1850.5 1178 81.2
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1822.8 1195 80.8
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1770.4 1168 75.6
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1746.9 1066 83.2
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1739.5 1165 76.9
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1718.4 1172 74.8
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1706.8 996 87.7
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1636.3 1167 70.4
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1634.8 1171 70.6
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1605.9 1151 75.8
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1583.2 942 85.7
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1490.3 847 89.0
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1470.7 1162 64.7
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1454.1 1165 63.4
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1427.9 1161 63.0
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1421.0 1162 62.7
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1404.8 839 84.7
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1396.7 1181 62.1
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1380.5 799 87.0
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1302.7 797 81.6
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1228.0 789 78.2
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1176.8 695 87.2
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1104.0 921 61.0
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 4.5e-305 1051.6 1192 46.4
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 1.0e-304 1050.4 576 93.4
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 4.3e-300 1035.0 654 81.3
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 5.3e-290 1001.5 742 72.1
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.5e-281 973.4 593 83.8
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 5.0e-280 968.4 546 90.3
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 9.4e-279 964.1 599 83.6
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.8e-259 899.4 519 83.8
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 3.1e-258 896.0 626 73.0
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 1.4e-229 800.8 481 85.9
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 3.4e-220 769.6 465 80.6
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 5.6e-215 752.3 449 89.3
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 3.8e-155 553.5 354 82.8
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 3.3e-151 540.4 358 79.3
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 1.3e-115 422.2 378 56.3
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 1.2e-111 409.1 284 73.2
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 6.0e-92 343.6 195 86.7
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 5.5e-61 240.7 169 77.5
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 1.2e-52 213.0 143 78.3
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.1e-45 189.9 117 87.2
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 1.0e-38 166.8 87 93.1
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 8.5e-38 163.7 96 91.7
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 2.3e-35 155.6 102 81.4
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 3.0e-35 155.2 78 93.6
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 1.2e-34 153.3 108 76.9
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 4.7e-20 104.8 84 67.9
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 5.2e-19 101.3 164 39.0
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 6.8e-19 100.9 142 43.0
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 4.1e-16 91.7 99 69.7
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.5e-13 83.2 51 78.4
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 1.9e-13 82.8 51 80.4
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.5e-13 82.4 51 80.4
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 6.0e-07 61.2 341 26.4
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 3.9e-06 58.5 45 62.2
Manes.10G036656 Manihot esculenta HOM05D005231 ORTHO05D006387 8.6e-06 57.4 57 54.4


User provided reference genes

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