Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 1.8e-131 472.6 247 100.0
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.6e-98 363.2 249 78.7
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.4e-93 345.5 250 74.0
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 4.4e-93 345.1 241 74.3
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 7.5e-93 344.4 252 75.4
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.2e-92 342.8 251 75.3
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 1.8e-91 339.7 243 74.1
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.8e-91 339.7 224 78.1
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 3.1e-91 339.0 244 73.8
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 4.1e-91 338.6 249 72.3
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 5.9e-90 334.7 250 72.8
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.1e-88 330.5 245 71.8
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 5.5e-88 328.2 245 71.4
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 1.2e-87 327.0 263 66.9
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 1.2e-87 327.0 241 70.5
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 1.6e-87 326.6 246 69.5
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 3.6e-87 325.5 233 73.8
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 1.8e-86 323.2 247 68.8
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 5.2e-86 321.6 245 70.2
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 8.8e-86 320.9 249 70.3
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 1.2e-85 320.5 247 67.6
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 1.5e-85 320.1 225 74.2
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 1.5e-85 320.1 247 67.6
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 1.5e-85 320.1 244 70.9
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 2.0e-85 319.7 248 68.1
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 7.5e-85 317.8 245 68.2
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 7.5e-85 317.8 246 69.9
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 7.5e-85 317.8 244 68.4
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 7.5e-85 317.8 233 73.8
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 2.8e-84 315.8 245 68.6
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.7e-84 315.5 246 69.5
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.4e-83 312.8 246 68.7
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.1e-83 312.4 246 68.7
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 3.1e-83 312.4 243 65.4
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 9.1e-83 310.8 242 67.4
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 1.6e-82 310.1 249 67.5
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 2.0e-82 309.7 226 72.6
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 2.0e-82 309.7 243 68.3
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 2.7e-82 309.3 256 64.8
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.5e-82 308.9 249 66.7
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 5.9e-82 308.1 247 68.4
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.7e-81 306.6 256 66.8
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 1.7e-81 306.6 280 61.1
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.3e-81 306.2 242 66.9
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 6.6e-81 304.7 237 67.9
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 8.6e-81 304.3 243 67.5
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 8.6e-81 304.3 241 68.9
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.5e-80 303.5 247 68.0
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 2.5e-80 302.8 245 65.7
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 3.3e-80 302.4 247 66.0
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 7.2e-80 301.2 275 60.0
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 1.2e-79 300.4 204 77.5
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 1.2e-79 300.4 250 67.6
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.2e-79 300.4 232 68.1
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.2e-79 300.4 232 69.4
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 1.2e-79 300.4 242 63.2
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.6e-79 300.1 242 64.5
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.8e-79 299.3 247 65.2
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 3.6e-79 298.9 244 65.6
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 4.7e-79 298.5 244 66.8
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 8.0e-79 297.7 276 57.2
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.8e-78 296.6 252 64.7
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 3.0e-78 295.8 250 64.0
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 5.2e-78 295.0 242 63.6
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 5.2e-78 295.0 276 56.9
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 6.8e-78 294.7 247 61.9
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 8.9e-78 294.3 235 68.5
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 1.2e-77 293.9 249 67.5
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 1.2e-77 293.9 247 61.9
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 1.5e-77 293.5 250 64.0
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 2.0e-77 293.1 250 64.0
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 2.6e-77 292.7 246 67.1
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 5.7e-77 291.6 252 64.3
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 5.7e-77 291.6 243 65.4
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 2.2e-76 289.7 253 63.6
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 4.9e-76 288.5 248 66.1
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 8.3e-76 287.7 240 65.0
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 8.3e-76 287.7 246 65.4
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 1.1e-75 287.3 226 68.1
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.4e-75 287.0 241 68.0
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 4.1e-75 285.4 245 61.6
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 7.0e-75 284.6 228 66.2
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.7e-74 282.7 242 63.6
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 2.7e-74 282.7 253 60.9
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 7.8e-74 281.2 254 62.6
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 2.9e-73 279.3 244 65.2
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 2.9e-73 279.3 252 60.7
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 3.9e-73 278.9 255 61.6
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 5.0e-73 278.5 270 58.5
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 6.6e-73 278.1 243 59.7
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 8.6e-73 277.7 244 64.8
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 8.6e-73 277.7 223 65.9
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.5e-72 276.9 196 77.0
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 2.5e-72 276.2 234 64.5
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 2.5e-72 276.2 247 64.4
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 4.3e-72 275.4 229 64.6
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.1e-71 273.1 253 61.7
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 4.7e-71 271.9 231 64.1
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 1.0e-70 270.8 246 62.2
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 1.8e-70 270.0 164 84.1
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 4.0e-70 268.9 255 60.0
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 8.9e-70 267.7 243 60.9
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 2.0e-69 266.5 227 60.8
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 1.3e-68 263.8 267 56.9
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 1.7e-68 263.5 257 58.4
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 4.9e-68 261.9 250 61.6
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 1.1e-67 260.8 260 57.7
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 1.1e-67 260.8 260 57.7
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 1.4e-67 260.4 191 72.8
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 7.0e-67 258.1 245 60.4
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 9.2e-67 257.7 258 57.0
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 9.2e-67 257.7 258 57.0
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 3.5e-66 255.8 228 62.7
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 6.0e-66 255.0 252 57.1
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 7.8e-66 254.6 216 63.4
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.8e-62 243.4 235 57.0
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 4.0e-62 242.3 224 61.2
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 4.9e-60 235.3 230 60.0
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 1.1e-59 234.2 253 55.7
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 2.4e-59 233.0 167 70.1
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 2.5e-56 223.0 203 59.6
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 1.6e-55 220.3 188 63.8
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 1.6e-50 203.8 234 50.4
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 1.7e-49 200.3 243 49.0
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 3.0e-49 199.5 238 50.4
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.6e-47 193.7 246 53.3
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 2.4e-46 189.9 173 60.7
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 1.2e-45 187.6 236 46.6
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 2.0e-45 186.8 209 52.2
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 6.4e-44 181.8 167 59.3
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 7.8e-42 174.9 123 71.5
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 1.1e-40 171.0 129 67.4
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 6.2e-39 165.2 112 80.4
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 6.2e-39 165.2 202 53.0
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 9.9e-37 157.9 205 46.3
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 2.2e-36 156.8 232 40.1
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 3.5e-34 149.4 239 39.7
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.3e-28 131.0 86 74.4
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.3e-28 131.0 116 59.5
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.2e-26 124.4 131 55.7
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.1e-26 123.6 131 55.7
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 3.5e-26 122.9 116 55.2
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 3.5e-26 122.9 116 55.2
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 3.5e-26 122.9 116 55.2
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 6.0e-26 122.1 130 55.4
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 1.8e-25 120.6 146 49.3
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 2.5e-24 116.7 180 45.6
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 1.5e-16 90.9 116 52.6
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 1.9e-16 90.5 100 54.0
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 7.4e-16 88.6 248 30.6
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 2.8e-15 86.7 104 49.0
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.8e-14 84.0 192 34.9
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.6e-10 70.9 57 70.2
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 5.1e-09 65.9 74 51.4
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 3.3e-08 63.2 44 70.5
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 1.3e-07 61.2 148 30.4
SMO361G0571 Selaginella moellendorffii HOM05D018282 ORTHO05D005223 1.1e-06 58.2 54 55.6
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 2.4e-06 57.0 132 31.1
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 5.3e-06 55.8 118 35.6
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 9.0e-06 55.1 123 35.0
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 9.0e-06 55.1 123 35.0
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 9.0e-06 55.1 128 35.2


User provided reference genes

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